• KIPS Transactions on Software and Data Engineering
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• v.6 no.11
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• pp.507-520
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• 2017

The set-based similar sequence matching method measures similarity not for an individual data item but for a set grouping multiple data items. In the method, the similarity of two sets is represented as the size of intersection between them. However, there is a critical performances issue for the method in twofold: 1) calculating intersection size is a time consuming process, and 2) the number of set pairs that should be calculated the intersection size is quite large. In this paper, we propose an index-based search method for improving performance of set-based similar sequence matching in order to solve these performance issues. Our method consists of two parts. In the first part, we convert the set similarity problem into the intersection size comparison problem, and then, provide an index structure that accelerates the intersection size calculation. Second, we propose an efficient set-based similar sequence matching method which exploits the proposed index structure. Through experiments, we show that the proposed method reduces the execution time by 30 to 50 times then the existing methods. We also show that the proposed method has scalability since the performance gap becomes larger as the number of data sequences increases.

• The Journal of Korean Institute of Communications and Information Sciences
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• v.21 no.6
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• pp.1361-1369
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• 1996

Motion estimation is one of the key components for high quality video coding. In this paper, a new motion estimation scheme for MPEG-like video coder is suggested. The proposed temporally adaptive motion estimation scheme consists of five functional blocks: Temporal subband analysis (TSBA), extraction of temporal information, scene change detection (SCD), picture type replacement (PTR), and temporally adapted block matching algorithm (TABMA). Here all the functional components are based on the temporal subband analysis. In this papre, we applied the analysis part of subband decompostion to the temporal axis of moving picture sequence, newly defined the temporal activity distribution (TAD) and average TAD, and proposed the temporally adapted block matching algorithm, the scene change detection algorithm and picture type replacement algorithm which employed the results of the temporal subband analysis. A new block matching algorithm TABMA is capable of controlling the block matching area. According to the temporal activity distribution of objects, it allocates the search areas nonuniformly. The proposed SCD and PTR can prevent unavailable motion prediction for abrupt scene changes. Computer simulation results show that the proposed motion estimation scheme improve the quality of reconstructed sequence and reduces the number of block matching trials to 40% of the numbers of trials in conventional methods. The TSBA based scene change detection algorithm can detect the abruptly changed scenes in the intentionally combined sequence of this experiment without additional computations.

• International Journal of Computer Science & Network Security
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• v.21 no.8
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• pp.196-202
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• 2021

DNA sequencing provides fundamental data in genomics, bioinformatics, biology and many other research areas. With the emergent evolution in DNA sequencing technology, a massive amount of genomic data is produced every day, mainly DNA sequences, craving for more storage and bandwidth. Unfortunately, managing, analyzing and specifically storing these large amounts of data become a major scientific challenge for bioinformatics. Those large volumes of data also require a fast transmission, effective storage, superior functionality and provision of quick access to any record. Data storage costs have a considerable proportion of total cost in the formation and analysis of DNA sequences. In particular, there is a need of highly control of disk storage capacity of DNA sequences but the standard compression techniques unsuccessful to compress these sequences. Several specialized techniques were introduced for this purpose. Therefore, to overcome all these above challenges, lossless compression techniques have become necessary. In this paper, it is described a new DNA compression mechanism of pattern matching extended Compression algorithm that read the input sequence as segments and find the matching pattern and store it in a permanent or temporary table based on number of bases. The remaining unmatched sequence is been converted into the binary form and then it is been grouped into binary bits i.e. of seven bits and gain these bits are been converted into an ASCII form. Finally, the proposed algorithm dynamically calculates the compression ratio. Thus the results show that pattern matching extended Compression algorithm outperforms cutting-edge compressors and proves its efficiency in terms of compression ratio regardless of the file size of the data.

• Journal of the Institute of Convergence Signal Processing
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• v.5 no.4
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• pp.294-300
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• 2004

According to the development of digital media technologies various algorithms for video clip matching have been proposed to match the video sequences efficiently. A large number of video search methods have focused on frame-wise query, whereas a relatively few algorithms have been presented for video clip matching or video shot matching. In this paper, we propose an efficient algorithm to index the video sequences and to retrieve the sequences for video clip query. To improve the accuracy and performance of video sequence matching, we employ the Cauchy function as a similarity measure between histograms of consecutive frames, which yields a high performance compared with conventional measures. The key frames extracted from segmented video shots can be used not only for video shot clustering but also for video sequence matching or browsing, where the key frame is defined by the frame that is significantly different from the previous frames. Experimental results with color video sequences show that the proposed method yields the high matching performance and accuracy with a low computational load compared with conventional algorithms.

• Journal of the Institute of Convergence Signal Processing
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• v.7 no.1
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• pp.11-16
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• 2006

To manipulate large video databases, effective video indexing and retrieval are required. A large number of video indexing and retrieval algorithms have been presented for frame-w]so user query or video content query whereas a relatively few video sequence matching algorithms have been proposed for video sequence query. In this paper, we propose an efficient algorithm to extract key frames using color histograms and to match the video sequences using edge features. To effectively match video sequences with low computational load, we make use of the key frames extracted by the cumulative measure and the distance between key frames, and compare two sets of key frames using the modified Hausdorff distance. Experimental results with several real sequences show that the proposed video retrieval algorithm using color and edge features yields the higher accuracy and performance than conventional methods such as histogram difference, Euclidean metric, Battachaya distance, and directed divergence methods.

• Journal of the Korea Institute of Information Security & Cryptology
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• v.16 no.1
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• pp.115-122
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• 2006

The most methods for intrusion detection are based on the misuse detection which accumulates hewn intrusion information and makes a decision of an attack against any behavior data. However it is very difficult to detect a new or modified aoack with only the collected patterns of attack behaviors. Therefore, if considering that the method of anomaly behavior detection actually has a high false detection rate, a new approach is required for very huge intrusion patterns based on sequence. The approach can improve a possibility for intrusion detection of known attacks as well as modified and unknown attacks in addition to the similarity measurement of intrusion patterns. This paper proposes a method which applies the multiple sequence alignments technique to the similarity matching of the sequence based intrusion patterns. It enables the statistical analysis of sequence patterns and can be implemented easily. Also, the method reduces the number of detection alerts and false detection for attacks according to the changes of a sequence size.

• Journal of Korea Society of Industrial Information Systems
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• v.17 no.6
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• pp.41-50
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• 2012

This paper presents a new sequence alignment method using the divide approach, which solves the problem by decomposing sequence alignment into several sub-alignments with respect to exact matching subsequences. Exact matching subsequences in the proposed method are bounded on the generalized suffix tree of two sequences, such as protein domain length more than 7 and less than 7. Experiment results show that protein sequence pairs chosen in PFAM database can be aligned using this method. In addition, this method reduces the time about 15% and space of the conventional dynamic programming approach. And the sequences were classified with 94% of accuracy.

• Journal of the Institute of Electronics Engineers of Korea SP
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• v.40 no.1
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• pp.96-102
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• 2003

Video copy detection is a complementary approach to watermarking. As opposed to watermarking, which relies on inserting a distinct pattern into the video stream, video copy detection techniques match content-based signatures to detect copies of video. Existing typical content-based copy detection schemes have relied on image matching. This paper proposes two new sequence matching techniques for copy detection and compares the performance with color techniques that is the existing techniques. Motion, intensity and color-based signatures are compared in the context of copy detection. Comparison of experimental results are reported on detecting copies of movie clips.

• Journal of KIISE:Databases
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• v.35 no.4
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• pp.356-367
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• 2008

As XML is gaining unqualified success in being adopted as a universal data representation and exchange format, particularly in the World Wide Web, the problem of querying XML documents poses interesting challenges to database researcher. Several structural XML query processing methods, including XISS and XR-tree, for past years, have been proposed for fast query processing. However, structural XML query processing has the problem of requiring expensive Join cost for twig path query Recently, sequence matching based XML query processing methods, including ViST and PRIX, have been proposed to solve the problem of structural XML query processing methods. Through sequence matching based XML query processing methods match structured queries against structured data as a whole without breaking down the queries into sub queries of paths or nodes and relying on join operations to combine their results. However, determining the structural relationship of ViST is incorrect because its numbering scheme is not optimized. And PRIX requires many processing time for matching LPS and NPS about XML data trees and queries. Therefore, in this paper, we propose efficient sequence matching method u sing the bottom-up query processing for efficient XML query processing. Also, to verify the superiority of our index structure, we compare our sequence matching method with ViST and PRIX in terms of query processing with linear path or twig path including wild-card('*' and '//').

• Proceedings of the Korea Contents Association Conference
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• 2003.11a
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• pp.290-297
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• 2003

A time-series database is a set of data sequences, each of which is a list of changing values corresponding to an object. Subsequence matching under time warping is defined as an operation that finds such subsequences whose time warping distance to a given query sequence are below a tolerance from a time-series database. In this paper, we first point out the characteristics of the previous methods for time-series sequence matching under time warping, and then discuss the approaches for applying them to whole matching as well as subsequence matching. Also, we perform quantitative performance evaluation via a series of experiments with real-life data. There have not been such researches in the literature that compare the performances of all the previous methods of subsequence matching under time warping. Thus, our results would be used as a good reference for showing their relative performances.