• Title/Summary/Keyword: Sequence Comparison

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Comparison of Similarity to Digital Watermarking using Various Sequences (디지털 워터마킹을 위한 각종 시퀀스의 유사도 비교)

  • 송상주;박두순;김선형
    • Journal of the Korea Society of Computer and Information
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    • v.6 no.4
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    • pp.21-29
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    • 2001
  • We show that image make converts of multiplex resolution using wavelet transform algorithm. To evaluate the robustness. we have measured comparison or similarity using various sequences which is inserted important coefficient of middle frequency band. The wavelet transform is advantage that it has a special quality of frequency domain and a special quality of spatial domain. Watermark is used pseudo random number, gaussian sequence, chaos sequence and sobel sequence. As result of experiments, it is to certify that The chaos sequence similarity is higher than other sequence. So the chaos sequence will be used for watermark sequence.

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A Comparison of Similarity in Wavelet for Robust Digital Watermarking (강인한 디지털 워터마킹을 위한 웨이브릿에서의 유사도 비교)

  • 송상주;박두순
    • Journal of the Korea Computer Industry Society
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    • v.2 no.8
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    • pp.1123-1132
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    • 2001
  • We show that image make converts of multiplex resolution using wavelet transform algorithm. To evaluate the robustness, we have measured comparison of similarity using various sequences which is inserted important coefficient of middle frequency band. The wavelet transform is advantage that it has a special quality of frequency domain and a special quality of spatial domain. As result of experiments, it is to certify that The chaos sequence similarity is higher than other sequence. So the chaos sequence will be used for watermark sequence.

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Genomic Organization of ancop Gene for ${\alpha}-COP$ Homolog from Aspergillus nidulans

  • Lee, Hwan-Hee;Chae, Shun-Kee;Kim, Jeong-Yoon;Maeng, Pil-Jae;Park, Hee-Moon
    • Mycobiology
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    • v.28 no.4
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    • pp.171-176
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    • 2000
  • We have cloned a ${\alpha}-COP$ homolog, ancop, from Aspergillus nidulans by colony hybridization of chromosome specific library using ${\alpha}-COP$ homologous fragment as a probe. The probe DNA was amplified with degenerated primers designed by comparison of conserved region of the amino acid sequences of Saccharomyces cerevisiae ${\alpha}-COP$, Homo sapiens HEP-COP, and Drosophila melanogaster ${\alpha}-COP$. Full length cDNA clone was also amplified by RT-PCR. Comparison of genomic DNA sequence with cDNA sequence obtained by RT-PCR revealed 7 introns. Amino acid sequence similarity search of the anCop with other ${\alpha}-COPs$ gave an overall identity of 52% with S. cerevisiae, 47% with human and bovine, 45% with Drosophila and Arabidopsis. In upstream region from the transcription start site, a putative TATA and CAAT motif were also identified.

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A Fault Section Detection Method for Ungrounded System Based on Phase Angle Comparison of Zero-Sequence Current (비접지 배전계통에서 영상전류 위상 비교에 의한 고장구간 검출 방법)

  • Yang, Xia;Choi, Myeon-Song;Lee, Seung-Jae
    • Proceedings of the KIEE Conference
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    • 2007.07a
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    • pp.31-32
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    • 2007
  • In this paper, a fault section detection method is proposed for ungrounded system in the case of a single line-to-ground fault. A conventional method is used for faulted feeder selection according to the angular relationship between zero-sequence currents of the feeders and zero-sequence voltage of the system. Fault section detection is based on the comparison of phase angle of zero-sequence current. Proposed method has been testified in a demo system by Matlab/Simulink simulations. Based on Distribution Automation System(DAS), Feeder Remote Terminal Unit(FRTU) is used to collect those necessary data, at present a demo system is under developing using Manufacturing Message Specification (MMS) in IEC61850 standard.

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A Comparison of Core Losses according to Winding Methods and Switching Sequence in Switched Reluctance Motor (스위치드 릴럭턴스 전동기의 권선 방식과 구동 방식에 따른 철손 비료)

  • Lee, Ji-Young;Lee, Byoung-Kuk;Tao, Sun;Hong, Jung-Pyo;Hur, Jin
    • Proceedings of the KIEE Conference
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    • 2005.07b
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    • pp.1104-1107
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    • 2005
  • This paper presents a comparison of core losses for the four cases of Switched Reluctance Motors (SRM) with different winding method and switching sequence. With concentrated winding SRM, two kinds of switching sequence are considered for one-phase exciting and two-phase simultaneously exciting driving. With both distributed winding and toroidal winding, two-phase exciting driving is considered. The ratio of calculated core losses to input power is able to be used a guide or reference for deciding the winding method and switching sequence of in the initial design stage of SRM.

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Complete Nucleotide Sequence of Small Multidrug Resistance Plasmid pKH4 (Small Multidrug Resistance(smr) 플라스미드 pKH4의 염기서열 결정)

  • 고창학;문경호
    • YAKHAK HOEJI
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    • v.43 no.6
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    • pp.789-792
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    • 1999
  • The complete nucleotide sequence of pKH4, a small multidrug resistance (smr) plasmid isolated from multidrug resistant Staphylococcus aureus SA5, was determined. Sequence analysis has revealed that pKH4 has two open reading frames for Rep and Smr proteins. The comparison of the amino acid sequence of Smr protein of pKH4 with those of other Smr proteins of various Staphylococcus showed that Smr protein of pKH4 is a new member of the SMR family.

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Morphology and Sequence Analysis of Nuclear 18S rDNA from the Summer Strain of Porphyra suborbiculata (Rhodophyta) in Korea (여름철 서식 한국산 홍조류 둥근돌김 (Porphyra suborbiculata)의 형태 및 18S rDNA 염기서열 분석)

  • JIN Long-Guo;KIM Myung-Sook;CHOI Jae-Suk;CHO Ji-Young;JIN Hyung-Joo;HONG Yong-Ki
    • Korean Journal of Fisheries and Aquatic Sciences
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    • v.33 no.6
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    • pp.489-495
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    • 2000
  • The 185 ribosomal RNA gene (185 rDNA) of the marine alga Porphyra sp. 723 (Bangiales, Rhodophyta) was amplified using the polymerase chain reaction and its sequence was analysed. The Porphyra species was a summer strain collected on rocks in upper intertidal zone at Ikidae, Pusan on 23rd July 1999. The fronds were $1{\~}5 cm$ long, monostromatic, and orbicular or ovate shaped, They had spinulate processes at margin of the frond, Comparison of this 185 rDNA sequence with the other Forphyra species indicates that Porphyra sp. 723 has the same 185 rDNA sequence derived from Porphyra suborbiculata (NCBI access number; AB 013180) except one base pair substitution in 2327 base pairs.

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A Comparison Study on the Separation Process of TaCl5 from the Chlorinated Reaction Product (염화반응법으로 제조된 TaCl5의 분리공정에 관한 비교 연구)

  • Cho, Jung-Ho;Park, So-Jin;Choi, Young-Yoon
    • Korean Chemical Engineering Research
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    • v.44 no.3
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    • pp.259-264
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    • 2006
  • The separation and purification of $TaCl_5$is indispensable in the synthetic process of $TaCl_5$by chlorination of tantalum oxide. The reaction products are mainly $TaCl_5$, $NbCl_5$, $TiCl_4$ and $FeCl_2$. However, we need to separate $TaCl_5/NbCl_5$ mixture from the reaction product, because $TaCl_5$ and $NbCl_5$ are easily separated each other by distillation or hydrogen reduction process. In this work, a comparison study was carried out between direct sequence and indirect sequence to obtain $TaCl_5/NbCl_5$ mixture from the reaction product by removing light component, $TiCl_4$ and heavy component, $FeCl_2$ using two distillation columns. It was concluded that the direct sequence gave better results than indirect sequence in the aspect of initial capital costs and the associative operating costs.

Global Sequence Homology Detection Using Word Conservation Probability

  • Yang, Jae-Seong;Kim, Dae-Kyum;Kim, Jin-Ho;Kim, Sang-Uk
    • Interdisciplinary Bio Central
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    • v.3 no.4
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    • pp.14.1-14.9
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    • 2011
  • Protein homology detection is an important issue in comparative genomics. Because of the exponential growth of sequence databases, fast and efficient homology detection tools are urgently needed. Currently, for homology detection, sequence comparison methods using local alignment such as BLAST are generally used as they give a reasonable measure for sequence similarity. However, these methods have drawbacks in offering overall sequence similarity, especially in dealing with eukaryotic genomes that often contain many insertions and duplications on sequences. Also these methods do not provide the explicit models for speciation, thus it is difficult to interpret their similarity measure into homology detection. Here, we present a novel method based on Word Conservation Score (WCS) to address the current limitations of homology detection. Instead of counting each amino acid, we adopted the concept of 'Word' to compare sequences. WCS measures overall sequence similarity by comparing word contents, which is much faster than BLAST comparisons. Furthermore, evolutionary distance between homologous sequences could be measured by WCS. Therefore, we expect that sequence comparison with WCS is useful for the multiple-species-comparisons of large genomes. In the performance comparisons on protein structural classifications, our method showed a considerable improvement over BLAST. Our method found bigger micro-syntenic blocks which consist of orthologs with conserved gene order. By testing on various datasets, we showed that WCS gives faster and better overall similarity measure compared to BLAST.

New Construction Method for Quaternary Aperiodic, Periodic, and Z-Complementary Sequence Sets

  • Zeng, Fanxin;Zeng, Xiaoping;Zhang, Zhenyu;Zeng, Xiangyong;Xuan, Guixin;Xiao, Lingna
    • Journal of Communications and Networks
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    • v.14 no.3
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    • pp.230-236
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    • 2012
  • Based on the known binary sequence sets and Gray mapping, a new method for constructing quaternary sequence sets is presented and the resulting sequence sets' properties are investigated. As three direct applications of the proposed method, when we choose the binary aperiodic, periodic, and Z-complementary sequence sets as the known binary sequence sets, the resultant quaternary sequence sets are the quaternary aperiodic, periodic, and Z-complementary sequence sets, respectively. In comparison with themethod proposed by Jang et al., the new method can cope with either both the aperiodic and periodic cases or both even and odd lengths of sub-sequences, whereas the former is only fit for the periodic case with even length of sub-sequences. As a consequence, by both our and Jang et al.'s methods, an arbitrary binary aperiodic, periodic, or Z-complementary sequence set can be transformed into a quaternary one no matter its length of sub-sequences is odd or even. Finally, a table on the existing quaternary periodic complementary sequence sets is given as well.