• Title/Summary/Keyword: Self organizing map

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Pattern Classification Algorithm of DNA Chip Image using ANN (신경망을 이용한 DNA칩 영상 패턴 분류 알고리즘)

  • Joo, Jong-Tae;Kim, Dae-Wook;Sim, Kwee-Bo
    • Journal of the Korean Institute of Intelligent Systems
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    • v.16 no.5
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    • pp.556-561
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    • 2006
  • It is very important to classify the DNA Chip image pattern in order to acquire useful information about genetic disease of people. In this paper, we developed the novel pattern classification method of DNA Chip image using MLP based back-propagation and Self organizing Map learning algorithm. And then we compared and analyzed these classified pattern results. Also we carried out experiment in the MV2440 board using CPU Cote for S3C2440(ARM 920T) and PC environment, and displayed its results in order to give the genetic information to user mote easily in various environment.

Relationships between Fish Communities and Environmental Variables in Islands, South Korea

  • Kwon, Yong-Su;Shin, Man-Seok;Yoon, Hee-Nam
    • Proceedings of the National Institute of Ecology of the Republic of Korea
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    • v.3 no.2
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    • pp.84-96
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    • 2022
  • Most of the islands of Korea are distributed in the South and West Sea, and it consists of independent small stream. As a result, the fish community that inhabits the island's stream is isolated from the mainland and other island. This study utilized a Self-Organizing Map (SOM) and a random forest model to analyze the relationship between environmental variables and fish communities inhabiting islands in South Korea. Through the SOM analysis, the fish communities were divided into three clusters, and there were differences in biotic and abiotic factors between these groups. Cluster I consisted of sites with relatively larger island areas and a higher number of species and population. It was found that 15 out of 16 indicator species were included. Meanwhile, the remaining clusters had fewer species and populations. Cluster II, especially, showed the lowest impact from physical variables such as water width and depth. As a result of predicting the species richness using the random forest model, physical variables in habitats, such as stream width and water depth, had a relatively higher importance on species richness. On the other hand, forest area was the most important variables for predicting Shannon diversity, followed by maximum water depth, and gravel. The results suggest that this study can be used as basic data for establishing a stream ecosystem management strategy in terms of conservation and protection of biological resources in streams of islands.

Application of data driven modeling and sensitivity analysis of constitutive equations for improving nuclear power plant safety analysis code

  • ChoHwan Oh;Doh Hyeon Kim;Jeong Ik Lee
    • Nuclear Engineering and Technology
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    • v.55 no.1
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    • pp.131-143
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    • 2023
  • Constitutive equations in a nuclear reactor safety analysis code are mostly empirical correlations developed from experiments, which always accompany uncertainties. The accuracy of the code can be improved by modifying the constitutive equations fitting wider range of data with less uncertainty. Thus, the sensitivity of the code with respect to the constitutive equations is evaluated quantitatively in the paper to understand the room for improvement of the code. A new methodology is proposed which first starts by dividing the thermal hydraulic conditions into multiple sub-regimes using self-organizing map (SOM) clustering method. The sensitivity analysis is then conducted by multiplying an arbitrary set of coefficients to the constitutive equations for each sub-divided thermal-hydraulic regime with SOM to observe how the code accuracy varies. The randomly chosen multiplier coefficient represents the uncertainty of the constitutive equations. Furthermore, the set with the smallest error with the selected experimental data can be obtained and can provide insight which direction should the constitutive equations be modified to improve the code accuracy. The newly proposed method is applied to a steady-state experiment and a transient experiment to illustrate how the method can provide insight to the code developer.

3-D Underwater Object Recognition Using PZT-Epoxy 3-3 Type Composite Ultrasonic Transducers (PZT-에폭시 3-3형 복합압전체 초음파 트랜스듀서를 사용한 3차원 수중 물체인식)

  • Cho, Hyun-Chul;Heo, Jin;SaGong, Geon
    • Journal of Sensor Science and Technology
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    • v.10 no.6
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    • pp.286-294
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    • 2001
  • In this study, 3-D underwater object recognition using the self-made 3-3 type composite ultrasonic transducer and modified SOFM(Self Organizing Feature Map) neural network are investigated. Properties of the self-made 3-3 type composite specimens are satisfied considerably with requirements as an underwater ultrasonic transducer's materials. 3-D underwater all object's recognition rates obtained from both the training data and testing data in different objects, such as a rectangular block, regular triangular block, square block and cylinderical block, were 100% and 94.0%, respectively. All object's recognition rates are obtained by utilizing the self-made 3-3 type composite transducer and SOFM neural network. From the object recognition rates, it could be seen that an ultrasonic transducer fabricated with the self-made 3-3 type composite resonator will be able to have application for the underwater object recognition.

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Machine-Part Grouping with Alternative Process Plan - An algorithm based on the self-organizing neural networks - (대체공정이 있는 기계-부품 그룹의 형성 - 자기조직화 신경망을 이용한 해법 -)

  • Jeon, Yong-Deok
    • Journal of Korean Society of Industrial and Systems Engineering
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    • v.39 no.3
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    • pp.83-89
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    • 2016
  • The group formation problem of the machine and part is a critical issue in the planning stage of cellular manufacturing systems. The machine-part grouping with alternative process plans means to form machine-part groupings in which a part may be processed not only by a specific process but by many alternative processes. For this problem, this study presents an algorithm based on self organizing neural networks, so called SOM (Self Organizing feature Map). The SOM, a special type of neural networks is an intelligent tool for grouping machines and parts in group formation problem of the machine and part. SOM can learn from complex, multi-dimensional data and transform them into visually decipherable clusters. In the proposed algorithm, output layer in SOM network had been set as one-dimensional structure and the number of output node has been set sufficiently large in order to spread out the input vectors in the order of similarity. In the first stage of the proposed algorithm, SOM has been applied twice to form an initial machine-process group. In the second stage, grouping efficacy is considered to transform the initial machine-process group into a final machine-process group and a final machine-part group. The proposed algorithm was tested on well-known machine-part grouping problems with alternative process plans. The results of this computational study demonstrate the superiority of the proposed algorithm. The proposed algorithm can be easily applied to the group formation problem compared to other meta-heuristic based algorithms. In addition, it can be used to solve large-scale group formation problems.

Structure-Adaptive Self-Organizing Neural Network : Application to Hangul Character Recognition (구조적응 자기조직화 신경망 : 한글 문자인식에의 적용)

  • Lee, Kyoung-Mi;Cho, Sung-Bae;Lee, Yill-Byung
    • Annual Conference on Human and Language Technology
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    • 1995.10a
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    • pp.137-142
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    • 1995
  • 코호넨의 SOFM(Self-Organizing Feature Map)온 빠른 검증 학습이 가능하여 다층 퍼셉트론의 단점을 보완할 수 있는 패턴분류기로 부각되고 있다. 그러나 기본적으로 고정된 크기와 구조의 네트워크를 사용하기 때문에 실재 문제에 적용하기가 쉽지 않다는 문제가 있다. 본 논문에서는 패턴에 대한 사전 정보없이 복잡한 패턴공간을 적응적으로 분할하기 위해 구조적응되는 자기조직화 신경망을 소개하고 이를 인쇄체 한글 문자의 인식에 적용한 결과를 보여준다. 여기에서 제안하는 신경망은 SOFM의 각 셀이 좀더 자세한 SOFM으로 확장될 수 있도록하며, 확률분포가 0인 셀을 제거함으로써 패턴 공간에 보다 근사한 분류를 가능하게 한다. 실제로 이러한 방식이 한글과 같은 복잡한 분류 문제에서 어떻게 작동하는지 설명하고, 한글 완성형 2350자에 대해 실험한 결과를 보여준다.

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Development of a Knowledge Discovery System using Hierarchical Self-Organizing Map and Fuzzy Rule Generation

  • Koo, Taehoon;Rhee, Jongtae
    • Proceedings of the Korea Inteligent Information System Society Conference
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    • 2001.01a
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    • pp.431-434
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    • 2001
  • Knowledge discovery in databases(KDD) is the process for extracting valid, novel, potentially useful and understandable knowledge form real data. There are many academic and industrial activities with new technologies and application areas. Particularly, data mining is the core step in the KDD process, consisting of many algorithms to perform clustering, pattern recognition and rule induction functions. The main goal of these algorithms is prediction and description. Prediction means the assessment of unknown variables. Description is concerned with providing understandable results in a compatible format to human users. We introduce an efficient data mining algorithm considering predictive and descriptive capability. Reasonable pattern is derived from real world data by a revised neural network model and a proposed fuzzy rule extraction technique is applied to obtain understandable knowledge. The proposed neural network model is a hierarchical self-organizing system. The rule base is compatible to decision makers perception because the generated fuzzy rule set reflects the human information process. Results from real world application are analyzed to evaluate the system\`s performance.

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A Study on Analysis of Cases of Application of Emotion Architecture (Emotion Architecture 적용 사례 분석에 관한 연구)

  • 윤호창;오정석;전현주
    • Proceedings of the Korea Contents Association Conference
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    • 2003.11a
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    • pp.447-453
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    • 2003
  • Emotion Technology is used in many field such as computer A.I., graphics, robot, and interaction with agent. We focus on the theory, the technology and the features in emotion application. Firstly in the field of theory, there are psychological approach, behavior-based approach, action-selection approach. Secondly in the field of implementation technologies use the learning algorithm, self-organizing map of neural network and fuzzy cognition maps. Thirdly in the field of application, there are software agent, agent robot and entrainment robot. In this paper, we research the case of application and analyze emotion architecture.

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A self-organizing neural networks approach to machine-part grouping in cellular manufacturing systems (셀 생산 방식에서 자기조직화 신경망을 이용한 기계-부품 그룹의 형성)

  • 전용덕;강맹규
    • Journal of Korean Society of Industrial and Systems Engineering
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    • v.21 no.48
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    • pp.123-132
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    • 1998
  • The group formation problem of the machine and part is a very important issue in the planning stage of cellular manufacturing systems. This paper investigates Self-Organizing Map(SOM) neural networks approach to machine-part grouping problem. We present a two-phase algorithm based on SOM for grouping parts and machines. SOM can learn from complex, multi-dimensional data and transform them into visually decipherable clusters. Output layer in SOM network is one-dimensional structure and the number of output node has been increased sufficiently to spread out the input vectors in the order of similarity. The proposed algorithm performs remarkably well in comparison with many other algorithms for the well-known problems shown in previous papers.

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Clustering Approaches to Identifying Gene Expression Patterns from DNA Microarray Data

  • Do, Jin Hwan;Choi, Dong-Kug
    • Molecules and Cells
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    • v.25 no.2
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    • pp.279-288
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    • 2008
  • The analysis of microarray data is essential for large amounts of gene expression data. In this review we focus on clustering techniques. The biological rationale for this approach is the fact that many co-expressed genes are co-regulated, and identifying co-expressed genes could aid in functional annotation of novel genes, de novo identification of transcription factor binding sites and elucidation of complex biological pathways. Co-expressed genes are usually identified in microarray experiments by clustering techniques. There are many such methods, and the results obtained even for the same datasets may vary considerably depending on the algorithms and metrics for dissimilarity measures used, as well as on user-selectable parameters such as desired number of clusters and initial values. Therefore, biologists who want to interpret microarray data should be aware of the weakness and strengths of the clustering methods used. In this review, we survey the basic principles of clustering of DNA microarray data from crisp clustering algorithms such as hierarchical clustering, K-means and self-organizing maps, to complex clustering algorithms like fuzzy clustering.