• Title/Summary/Keyword: Selectivity factor

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Factors Influencing Preferential Utilization of RNA Polymerase Containing Sigma-38 in Stationary-Phase Gene Expression in Escherichia coli

  • Kim, Eun-Young;Shin, Min-Sang;Rhee, Joon-Haeng;Hyon E. Choy
    • Journal of Microbiology
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    • v.42 no.2
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    • pp.103-110
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    • 2004
  • In order to understand the molecular basis of selective expression of stationary-phase genes by RNA polymerase containing$\sigma$$\^$38/ (E$\sigma$$\^$38/) in Escherichia coli, we examined transcription from the stationary-phase promoters, katEP, bo1AP, hdeABP, csgBAP, and mcbP, in vivo and in vitro. Although these pro-moters are preferentially recognized in vivo by E$\sigma$$\^$38/, they are transcribed in vitro by both E$\sigma$$\^$38/ and E$\sigma$$\^$70/ containing the major exponential $\sigma$, $\sigma$$\^$70/. In the presence of high concentrations of glutamate salts, how-ever, oldy E$\sigma$$\^$38/ was able to efficiently transcribe from these promoters, which supports the concept that the promoter selectivity of $\sigma$$\^$38/-containing RNA polymerase is observed only under specific reaction con-ditions. The examination of 6S RNA, which is encoded by the ssr1 gene in vivo, showed that it reduced E$\sigma$$\^$70/ activity during the stationary phase, but this reduction of activity did not result in the elevation of E$\sigma$$\^$38/ activity. Thus, the preferential expression of stationary-phase genes by E$\sigma$$\^$38/ is unlikely the con-sequence of selective inhibition of E$\sigma$$\^$70/ by 6S RNA.

CoMFA and CoMSIA Analysis on the Selective Fungicidal Activity of N-phenyl-D-phenylthionocarbamate Analogues against Resistant and Sensitive Gray Mold (Botrytis cinerea) (저항성 및 감수성 잿빛곰팡이병균(Botrytis cinerea)에 대한 N-Phenyl-O-phenylthionocarbamate 유도체들의 선택적인 살균활성에 관한 CoMFA 및 CoMSIA 분석)

  • Soung, Min-Gyu;Sung, Nack-Do
    • The Korean Journal of Pesticide Science
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    • v.11 no.3
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    • pp.138-143
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    • 2007
  • The relationships between three dimensional quantitative structure and activity relationships (3D-QSARs) for the selective fungicidal function between N-phenyl substituents of N-phenyl-O-phenyl-thionocarbamate derivatives analogues and their the fungicidal activities against resistant (RBC) and sensitive (SBC) gray mold (Botrytis cinerea) were studied quantitatively using CoMFA and CoMSIA methods. The statistical values of optimized CoMSIA (M7) model were better ($r^2$ & $q^2=CoMSIA{\gg}CoMFA$) than that of CoMFA (M5) model. And the factor influencing of the selective between the fungicidal activity against RBC and SBC was dependent on electrostatic field of CoMFA (M5) model. Therefore, it is predicted that, from the CoMSIA contour maps of CoMSIA (M7) model, the selectivity will be improved by the H-bond donor that is with negatively charged favored group at meta-position on the N-phenyl ring.

Determination of methamphetamine and amphetamine enantiomers in human urine by chiral stationary phase liquid chromatography-tandem mass spectrometry

  • Sim, Yeong Eun;Ko, Beom Jun;Kim, Jin Young
    • Analytical Science and Technology
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    • v.32 no.5
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    • pp.163-172
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    • 2019
  • Methamphetamine (MA) is currently the most abused illicit drug in Korea and its major metabolite is amphetamine (AP). As MA exist as two enantiomers with the different pharmacological properties, it is necessary to determine their respective amounts in a sample. Thus a chiral stationary phase liquid chromatography-tandem mass spectrometric (LC-MS/MS) method was developed for identification and quantification of d-MA, l-MA, d-AP, and l-AP in human urine. Urine sample ($200{\mu}L$) was diluted with pure water and purified using solid-phase extraction (SPE) cartridge. A $5-{\mu}L$ aliquot of SPE treated sample solution was injected into LC-MS/MS system. Chiral separation was carried out on the Astec Chirobiotic V2 column with an isocratic elution for each enantiomer. Identification and quantification of enantiomeric MA and AP was performed using multiple reaction monitoring (MRM) detection mode. Linear regression with a $1/x^2$ as the weighting factor was applied to generate a calibration curve. The linear ranges were 25-1000 ng/mL for all compounds. The intra- and inter-day precisions were within 3.6 %, while the intra- and inter-day accuracies ranged from -5.4 % to 11.8 %. The limits of detection were 2.5 ng/mL (d-MA), 3.5 ng/mL (l-MA), 7.5 ng/mL (d-AP), and 7.5 ng/mL (l-AP). Method validation parameters such as selectivity, matrix effect, and stability were evaluated and met acceptance criteria. The applicability of the method was tested by the analysis of genuine forensic urine samples from drug abusers. d-MA is the most common compound found in urine and mainly used by abusers.

Optimization and Packed Bed Column Studies on Esterification of Glycerol to Synthesize Fuel Additives - Acetins

  • Britto, Pradima J;Kulkarni, Rajeswari M;Narula, Archna;Poonacha, Sunaina;Honnatagi, Rakshita;Shivanathan, Sneha;Wahab, Waasif
    • Korean Chemical Engineering Research
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    • v.60 no.1
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    • pp.70-79
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    • 2022
  • Biodiesel production has attracted attention as a sustainable source of fuel and is a competitive alternate to diesel engines. The glycerol that is produced as a by-product is generally discarded as waste and can be converted to green chemicals such as acetins to increase bio-diesel profitability. Acetins find application in fuel, food, pharmaceutical and leather industries. Batch experiments and analysis have been previously conducted for synthesis of acetins using glycerol esterification reaction aided by sulfated metal oxide catalysts (SO42-/CeO2-ZrO2). The aim of this study was to optimize process parameters: effects of mole ratio of reactants (glycerol and acetic acid), catalyst concentration and reaction temperature to maximize glycerol conversion/acetin selectivity. The optimum conditions for this reaction were determined using response surface methodology (RSM) designed as per a five-level-three-factor central composite design (CCD). Statistica software 10 was used to analyze the experimental data obtained. The optimized conditions obtained were molar ratio - 1:12, catalyst concentration - 6 wt.% and temperature -90 ℃. A packed bed reactor was fabricated and column studies were performed using the optimized conditions. The breakthrough curve was analyzed.

Combined Effect of Catholyte Gap and Cell Voltage on Syngas Ratio in Continuous CO2/H2O Co-electrolysis

  • Ha, Min Gwan;Na, Youngseung;Park, Hee Young;Kim, Hyoung-Juhn;Song, Juhun;Yoo, Sung Jong;Kim, Yong-Tae;Park, Hyun S.;Jang, Jong Hyun
    • Journal of Electrochemical Science and Technology
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    • v.12 no.4
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    • pp.406-414
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    • 2021
  • Electrochemical devices are constructed for continuous syngas (CO + H2) production with controlled selectivity between CO2 and proton reduction reactions. The ratio of CO to H2, or the faradaic efficiency toward CO generation, was mechanically manipulated by adjusting the space volume between the cathode and the polymer gas separator in the device. In particular, the area added between the cathode and the ion-conducting polymer using 0.5 M KHCO3 catholyte regulated the solution acidity and proton reduction kinetics in the flow cell. The faradaic efficiency of CO production was controlled as a function of the distance between the polymer separator and cathode in addition to that manipulated by the electrode potential. Further, the electrochemical CO2 reduction device using Au NPs presented a stable operation for more than 23 h at different H2:CO production levels, demonstrating the functional stability of the flow cell utilizing the mechanical variable as an important operational factor.

Chronicles of EGFR Tyrosine Kinase Inhibitors: Targeting EGFR C797S Containing Triple Mutations

  • Duggirala, Krishna Babu;Lee, Yujin;Lee, Kwangho
    • Biomolecules & Therapeutics
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    • v.30 no.1
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    • pp.19-27
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    • 2022
  • Epidermal growth factor receptor (EGFR) is a receptor tyrosine kinase widely expressed in many cancers such as non-small cell lung cancer (NSCLC), pancreatic cancer, breast cancer, and head and neck cancer. Mutations such as L858R in exon 21, exon 19 truncation (Del19), exon 20 insertions, and others are responsible for aberrant activation of EGFR in NSCLC. First-generation EGFR tyrosine kinase inhibitors (TKIs) such as gefitinib and erlotinib have clinical benefits for EGFR-sensitive (L858R and Del19) NSCLC patients. However, after 10-12 months of treatment with these inhibitors, a secondary T790M mutation at the gatekeeper position in the kinase domain of EGFR was identified, which limited the clinical benefits. Second-generation EGFR irreversible inhibitors (afatinib and dacomitinib) were developed to overcome this T790M mutation. However, their lack of selectivity toward wild-type EGFR compromised their clinical benefits due to serious adverse events. Recently developed third-generation irreversible EGFR TKIs (osimertinib and lazertinib) are selective toward driving mutations and the T790M mutation, while sparing wild-type EGFR activity. The latest studies have concluded that their efficacy was also compromised by additional acquired mutations, including C797S, the key residue cysteine that forms covalent bonds with irreversible inhibitors. Because second- and third-generation EGFR TKIs are irreversible inhibitors, they are not effective against C797S containing EGFR triple mutations (Del19/T790M/C797S and L858R/T790M/C797S). Therefore, there is an urgent unmet medical need to develop next-generation EGFR TKIs that selectively inhibit EGFR triple mutations via a non-irreversible mechanism.

Pretreatment for Improving Selective Hydrogenation Reaction of α, β-Unsaturated Aldehydes (α, β-불포화 알데히드의 선택적 수소화 반응성 향상을 위한 전처리 방법)

  • Kook-Seung Shin;Mi-Sun Cha;Chang-Soo Lee
    • Korean Chemical Engineering Research
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    • v.61 no.1
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    • pp.168-174
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    • 2023
  • In commercial production processes of methyl methacrylate, there is a methacryl aldehyde as an intermediate or impurities. The existence of impurities is critical factor because of significant decrease of the conversion rate and selectivity of the entire chemical reaction. This study found that an acid was the main cause of the decrease in reactivity among various impurities because an acid rapidly lowers the activity of a catalyst and promotes a side reaction, the hetero Diels-Alder reaction. Therefore, the pretreatment methods with the removal of acid were comparatively evaluated by the selective hydrogenation reaction of the carbonyl group of the reactants. Based on several experimental conditions, we believe that proposed effective pretreatment improves productivity with appropriate economical process.

Preparation of PEBAX/PVDF Composite Membrane and Separaration of Ethanol/Water Mixtures by Pervaporation (PEBAX/PVDF 복합막 제조 및 투과증발을 통한 에탄올/물 분리 연구)

  • Ye Won Jeong;Haeeun Na;Se Wook Jo;Min Young Shon
    • Membrane Journal
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    • v.33 no.6
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    • pp.377-382
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    • 2023
  • In this study, a PEBAX/PVDF composite membrane was fabricated, and its pervaporation performance was tested in an ethanol/water mixture. In addition, we attempted to improve the pervaporation performance of the composite membrane by forming a ZIF-8 layer on the surface of the PVDF substrate. The thickness of selective layer was optimized by comparing the pervaporation performance depending on the PEBAX thickness. A pervaporation test was performed on the Ethanol/Water mixture. As a result, the composite membrane using PVDF substrate with ZIF-8 layer had a flux of 1.98 kg/m2h and separation factor of 3.88, showing higher values of both permeation flux and selectivity than the composite membrane using bare PVDF substrate.

Membrane-Based Carbon Dioxide Separation Process for Blue Hydrogen Production (블루수소 생산을 위한 이산화탄소 포집용 2단 분리막 공정 최적화 연구)

  • Jin Woo Park;Joonhyub Lee;Soyeon Heo;Jeong-Gu Yeo;Jaehoon Shim;Jinhyuk Yim;Chungseop Lee;Jin Kuk Kim;Jung Hyun Lee
    • Membrane Journal
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    • v.33 no.6
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    • pp.344-351
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    • 2023
  • The membrane separation process for carbon dioxide capture from hydrogen reformer exhaust gas has been developed. Using a commercial membrane module, a multi-stage process was developed to achieve 90% of carbon dioxide purity and 90% of recovery rate for ternary mixed gas. Even if a membrane module with being well-known properties such as material selectivity and permeability, the process performance of purity and recovery widely varies depending on the stage-cut, the pressure at feed and permeate side. In this study, we verify the limits of capture efficiency at single-stage membrane process under various operating conditions and optimized the two-stage recovery process to simultaneously achieve high purity and recovery rate.

Hydrolyzed PAN Hollow Fiber PVA Composite Membrane for Pervaporation Separation of Water-ethanol Mixtures (가수분해된 PAN 중공사 PVA 복합막을 이용한 물-에탄올 계의 투과증발 분리)

  • Kang, Su Yeon;Kim, So Yeon;Cheong, Seong Ihl;Seo, Chang Hee;Park, Hun Whee;Rhim, Ji Won
    • Membrane Journal
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    • v.23 no.4
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    • pp.283-289
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    • 2013
  • Poly(vinyl alcohol) (PVA) coating solution containing glutaraldehyde (GA) and maleic anhydride (MA) as crosslinking agents was coated onto hydrolyzed poly acrylonitrile (PAN) hollow fiber membranes. The permselectivities of the resulting composite membranes prepared varying the reaction temperature and the concentration of the crosslinking agents were tested for 90 wt% ethanol aqueous mixtures by the pervaporation technique at $60^{\circ}C$. In general, the flux decreased while the selectivity increased for the increases of the reaction temperature and the crosslinking concentration. In case of GA as a crosslinking, the flux $165g/m^2hr$ and the separation factor 81 were obtained at GA 11 wt% and the reaction temperature $120^{\circ}C$. And for the case of MA, the flux $174g/m^2hr$ and the separation factor 73 were obtained at MA 11 wt% and the reaction temperature $120^{\circ}C$.