• Journal of Conservation Science
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• v.17 s.17
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• pp.39-56
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• 2005

The Gwangtonggyo(bridge) on the Cheonggyecheon(river) is mainly composed of biotite granite with coarse grain. The rock consists mainly of quartz, plagioclase, microcline, orthoclase and biotite with lesser amount of muscovite, sericite and chlorite. Muscovite and sericite may be formed from feldspars and chlorite from biotite by alteration(including weathering). These rocks are relatively deteriorated by weathering, polluted water running the river and heavy traffic. The main phenomena of damages are surface exfoliation, grain separation, deceleration, pollution of organic and heavy chemical elements, cracks and breakage. These phenomena have been analyzed by polarized microscope, XRD and SEM/EDX. The analyzed results show organic pollution and secondarily formed gypsum and apatite on the rock surface and micro-pores. NaCl and $CaCO_3$ as rock salt and calcite probably may be formed secondarily in some points. Also heavy chemical elements such as Cr, Pb, Pd, W, La, Zn and Nd are polluted in some samples. The contacts between rocks are generally breakdown in small scale or cracks are developed due to mainly load and vibration shock of heavy traffic.

• Journal of Photoscience
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• v.9 no.2
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• pp.534-536
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• 2002

A halophilic archaeon, Halobacterium salinarum, exhibits phototactic behaviors, by which the organism is guided to red-orange light and evades shorter wavelengths of light. The phototaxis is mediated by two retinal proteins, sensory rhodopsin I and II (SRI and SRII), whose structures are analogous to the cognate protein bacteriorhodopsin, a light-driven proton pump. SRI mediates both attractant and repellent swimming behaviors to orange light and near- UV light, respectively. The two different signaling through the single photoreceptor have been ascribed to the presence of two active structures of SRI (S$\_$373/ and P$\_$520), which are produced upon orange light illumination of SRI and upon subsequent near-UV illumination of S$\_$373/, respectively. In the present study, we have measured the difference FTIR spectra of S$\_$373/ and P$\_$520/ states. In P$\_$520/, the isomeric structure of the chromophore is assignable to all-trans, and the Schiff base of the chromophore is protonated with concomitant deprotonation of Asp76, a combination which allows for the formation of a salt bridge between them. It was suggested that the way of interaction between the Schiff base and the counterion, which is different among SRI$\_$587/, S$\_$373/ and P$\_$520/ and which has been shown to drive the conformational changes in the cognate protein, bacteriorhodopsin, is the key to controlling conformational changes for the attractant and the repellent signaling by SRI.

• Bulletin of the Korean Chemical Society
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• v.33 no.8
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• pp.2508-2512
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• 2012

Cold shock proteins (CSPs) are a family of proteins induced at low temperatures. CSPs bind to single-stranded nucleic acids through the ribonucleoprotein 1 and 2 (RNP 1 and 2) binding motifs. CSPs play an essential role in cold adaptation by regulating transcription and translation via molecular chaperones. The solution nuclear magnetic resonance (NMR) or X-ray crystal structures of several CSPs from various microorganisms have been determined, but structural characteristics of psychrophilic CSPs have not been studied. Therefore, we optimized the purification process to obtain highly pure Lm-Csp and determined the three-dimensional structure model of Lm-Csp by comparative homology modeling using MODELLER on the basis of the solution NMR structure of Bs-CspB. Lm-Csp consists of a ${\beta}$-barrel structure, which includes antiparallel ${\beta}$ strands (G4-N10, F15-I18, V26-H29, A46-D50, and P58-Q64). The template protein, Bs-CspB, shares a similar ${\beta}$ sheet structure and an identical chain fold to Lm-Csp. However, the sheets in Lm-Csp were much shorter than those of Bs-CspB. The Lm-Csp side chains, E2 and R20 form a salt bridge, thus, stabilizing the Lm-Csp structure. To evaluate the contribution of this ionic interaction as well as that of the hydrophobic patch on protein stability, we investigated the secondary structures of wild type and mutant protein (W8, F15, and R20) of Lm-Csp using circular dichroism (CD) spectroscopy. The results showed that solvent-exposed aromatic side chains as well as residues participating in ionic interactions are very important for structural stability. Further studies on the three-dimensional structure and dynamics of Lm-Csp using NMR spectroscopy are required.

• Korean Journal of Remote Sensing
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• v.32 no.2
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• pp.185-194
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• 2016

The effect of artificial changes in geographical features on local wind was analyzed at the construction site of bridge and fill-up bank in the southern part of Haui-do. Geographic Information System (GIS) data and Computational Fluid Dynamics (CFD) model were used in this study. Three-dimensional numerical topography based on the GIS data for the target area was constructed for the surface boundary input data of the CFD model. The wind observations at an Automatic Weather Station (AWS) located in Haui-do were used to set-up the model inflows. The seasonal simulations were conducted. The differences in surface wind speed between after and before artificial changes in geographical features were analyzed. The surface wind speed decreases 5 to 20% at the south-western part and below 2% of the spatial average for salt field. There was also marked the effect of artificial changes in geographical features on local wind in the westerly wind case for the target area.

• Proceedings of the Korea Concrete Institute Conference
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• 2008.11a
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• pp.773-776
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• 2008

The corrosion of steel in concrete is significant in marine environment. Marine bridges are readily deteriorated due to the exposure to marine environment. Salt damage is one of the most detrimental causes to concrete bridges and port structures. Especially, the splash and tidal zones around water line are comparatively important in terms of safety and life-time point of view. During the last several decades, cathodic protection (cp) has been commonly accepted as an effective technique for corrosion control in concrete structures. Zn-mesh sacrificial anode has been recently developed and started to apply to the bridge column cp in marine condition. The detailed parameters regarding Zn-mesh cp technique, however, have not well understood. This study is to investigate how much Zn-mesh cp influences along the concrete column at elevated temperature. About 100cm column specimens with eight of 10cm segment rebars have been used to measure the variation of cp potential with the distance from Zn-mesh anode at both 10$^{\circ}$C and 40$^{\circ}$C in natural seawater. The cp potential change and current diminishment along the column specimens have been discussed for the optimum design of cp by Zn-mesh sacrificial anode

• Bulletin of the Korean Chemical Society
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• v.35 no.8
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• pp.2494-2504
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• 2014

P38 mitogen activated protein (MAP) kinase is an important anti-inflammatory drug target, which can be activated by responding to various stimuli such as stress and immune response. Based on the conformation of the conserved DFG loop (in or out), binding inhibitors are termed as type-I and II. Type-I inhibitors are ATP competitive, whereas type-II inhibitors bind in DFG-out conformation of allosteric pocket. It remains unclear that how these allosteric inhibitors stabilize the DFG-out conformation and interact. Organosilicon compounds provide unusual opportunity to enhance potency and diversity of drug molecules due to their low toxicity. However, very few examples have been reported to utilize this property. In this regard, we performed docking of an inhibitor (BIRB) and its silicon analog (Si-BIRB) in an allosteric binding pocket of p38. Further, molecular dynamics (MD) simulations were performed to study the dynamic behavior of the simulated complexes. The difference in the biological activity and mechanism of action of the simulated inhibitors could be explained based on the molecular mechanics/generalized Born surface area (MM/GBSA) binding free energy per residue decomposition. MM/GBSA showed that biological activities were related with calculated binding free energy of inhibitors. Analyses of the per-residue decomposed energy indicated that van der Waals and non-polar interactions were predominant in the ligand-protein interactions. Further, crucial residues identified for hydrogen bond, salt bridge and hydrophobic interactions were Tyr35, Lys53, Glu71, Leu74, Leu75, Ile84, Met109, Leu167, Asp168 and Phe169. Our results indicate that stronger hydrophobic interaction of Si-BIRB with the binding site residues could be responsible for its greater binding affinity compared with BIRB.

• Journal of the Korean Chemical Society
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• v.27 no.3
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• pp.194-200
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• 1983

Effect of metallic salts added to the ${\alpha}-Fe_2O_3-HCl\;or\;{\alpha}-Fe_2O_3-H_2SO_4$ reaction systems were investigated by colorimetric and gravimetric determinations. While reductive salts exhibited remarkably enhanced reaction rate, non-reductive salts showed inhibitive results. We supposed that the improvement of dissolution rate of ${\alpha}-Fe_2O_3$ by the addition of $FeCl_2$, a reductive salt, to the ${\alpha}-Fe_2O_3-HCl$ system can be attributed to the formation of chloro-bridge between $Fe^{3+}\;and\; Fe^{2+}$, and therefore some partial electronic charge transfer from $Fe^{2+}\;to\;Fe^{3+}$ on the surface of ${\alpha}-Fe_2O_3$ will be easily achieved through the bridged bond. The transferred charge to the surface will reduce the positive charge of initial $Fe^{3+}$, and also result to reduce the lattice energy of that site. Assuming tothat there is a linear relationship between the lattice energy change and the change of activation energy of the reaction system, the transferred partial electronic charge to $Fe^{3+}$ of ${\alpha}-Fe_2O_3$ surface was calculated to be ca. 0.36e.

• Neonatal Medicine
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• v.16 no.2
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• pp.234-238
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• 2009

Posthemorrhagic hydrocephalus is a major problem in premature infants. We describe our experience with a neonate that was an extremely low birth weight infant with posthemorrhagic hydrocephalus, who was treated by repeated ventricular drainage through an Ommaya reservoir for more than two months until the placement of a ventriculoperitoneal shunt was possible. The Ommaya reservoir served as a bridge to definitive treatment. The patient required sodium supplements due to excessive salt loss from the repeated ventricular drainage procedures. Regular measurement of serum electrolytes in any infant requiring serial ventricular drainage is recommended.

• Proceeding of EDISON Challenge
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• 2015.03a
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• pp.14-23
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• 2015

Alzheimer's disease is one of the most common types of degenerative dementia. As a considerable cause of Alzheimer's disease, neurotoxic plaques composed of 39 to 42 residue-long amyloid beta($A{\beta}$) fibrils have been found in the patient's brain in large quantity. A previous study found that erythrosine B (ER), a red color food dye approved by FDA, inhibits the formation of amyloid beta fibril structures. Here, in an attempt to elucidate the inhibition mechanism, we performed molecular dynamics simulations to demonstrate the conformational change of $A{\beta}40$ induced by 2 ERs in atomistic detail. During the simulation, the ERs bound to the surfaces of both N-terminus and C-terminus regions of $A{\beta}40$ rapidly. The observed stacking of the ERs and the aromatic side chains near the N-terminus region suggests a possible inhibition mechanism in which disturbing the inter-chain stacking of PHEs destabilizes beta-sheet enriched in amyloid beta fibrils. The bound ERs block water molecules and thereby help stabilizing alpha helical structure at the main chain of C-terminus and interrupt the formation of the salt-bridge ASP23-LYS28 at the same time. Our findings can help better understanding of the current and upcoming treatment studies for Alzheimer's disease by suggesting inhibition mechanism of ER on the conformational transition of $A{\beta}40$ at the molecular level.

• Journal of the Korean Chemical Society
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• v.61 no.1
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• pp.34-44
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• 2017

The purpose of this study was to analyze the conception type change and to investigate the effect of understanding on concepts in electrochemistry after general chemistry lessons. The significant differences in concept understanding of electrochemistry were shown in both groups. Statistically significant gains in both groups were as shown in distinguishing the chemical cell, in identifying the anode and cathode, and in understanding current formation and flow, while, significant achievements in understanding the role of the salt bridge, and the need for a standard half-cell were not found. Taking elective chemistry II in high school had an effect on understanding related concepts of electrochemistry in general chemistry lessons. It was shown that many freshmen had difficulties in understanding exact related concepts in several kinds after general chemistry lessons. In order to solve these problems, it is necessary to teach contents of the basic concepts in electrochemistry exactly and to hold supplementary lessons.