• Title/Summary/Keyword: SHANNON'S DIVERSITY

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Change of the Vegetation Due to Soyanggang Dam Construction (소양강댐 건설에 따른 주변 식생의 변화)

  • Choi, Ho;Park, Pil-Sun;Kim, Jae-Geun;Suh, Sim-Eun
    • Journal of Wetlands Research
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    • v.12 no.3
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    • pp.1-13
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    • 2010
  • Most of investigations about the effects of dam construction on the surrounding environments have focused mainly on the change of climate conditions and crop production. In order to research the effect of dam construction on the surrounding vegetation, we chose the Soyanggang dam whose storage capacity is the largest in Korea, and was built 33 years ago. We surveyed and analyzed the surrounding vegetation by using quadrat method and measured the soil moisture content among floodplain (FP), 5m above the flood plain (AFP) and control group (CG) which is 3km far from the lake through ridge. The largest value of mean importance percentage of the canopy~understory layer at FP was Salix koreensis (87.9%) and those of AFP and CG was Quercus mongolica (38.9% and 40.4% respectively) and the largest important percentage of the herb layer at FP was Artemisia capillaris (34.2%) and those of AFP and CG was Oplismenus undulatifolius var. undulatifolius (9.4% and 24.6% respectively). The Shannon-Wiener diversity index of shrub~canopy layer at FP (0.26) was lower than AFP (2.34) and CG (2.23) and there was not any significant difference in the herb layer among three groups. The S${\o}$rensen similarity index between FP and AFP, FP and CG was 0, and that of AFP and CG was relatively high. The highest density of tree and subtree with the DBH level of FP was S. koreensis of 5~10cm (240/ha), and that of AFP and CG was Quercus spp. of 15~20cm (400/ha and 466/ha respectively). And the highest density of seedlings of FP was Pinus densiflora (7,040/ha), and that of AFP and CG was Quercus spp. (720/ha and 400/ha respectively). The soil water content of FP (6.28%) was relatively lower than AFP and CG (11.13% and 10.14% respectively; p<.01). These results indicated that construction of Soyanggang dam changed the vegetation of the floodplain, without showing a change in its upland areas.

Vegetation Types and Their Structures of the Piagol, Mt. Chiri (지리산 피아골의 식생형과 그 구조)

  • 장윤석;임양재
    • Journal of Plant Biology
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    • v.28 no.2
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    • pp.165-175
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    • 1985
  • The natural forest vegetation of the Piagol, Mt. Chiri, was classified into five major communities, i.e. Quercus mongolica, Carpinus laxiflora, C. tschonoskii, Q. serrata and Fraxinus mandshurica community. C. tschonoskii, C. laxiflora and Q. mongolica characteristically were dominated in the range of 500∼700 m, 700∼900 m and 900∼1,400 m in altitude, respectively. Abies nephrolepis and Rhododendron schlippenbachii in the ridge of Nogodan-Nalnaribong, and F. mandshurica and Q. serrata in the Yongsuam ravine were found as the dominant species. The transition between C. tschonoskii and C. laxiflora communities was relatively wide. The boundary between F. mandshurica, in the conglomerated zone, and the other communities surrounding its community was fairly abrupt. In Q. mongolica community, the canopy was relatively opened and the oak young tree of undergrowth was fairly dense. In the community of C. laxiflora and C. tschonoskii, the species composed of their understory was rich while their coverage was lower than that of Q. mongolica community. Shannon's diversity index was decreased in order of C. tschonoskii, C. laxiflora and Q. mongolica community, while their Simpson's dominance index increased conversely. Judging by the DBH-class distribution showing the negative exponential curve, these communities were considered as the climax forest. In Polar Ordination used samples (quadrats), the vegetation of the Piagol was divided into five groups, which was coincided with five communities classified by Braun-Blanquet system. In the ordination, the first axis and the second axis may be considered soil conditions and thermal conditions, respectively. It seems that two different methods, phytosociological method in macro level and ordination techniques in micro level, are useful for the vegetation classification.

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Analysis of Genetic Characteristic of Jujube (Ziziphus jujuba Mill.) Cultivated in Korea Revealed by ISSR Markers (ISSR 표지를 이용한 국내 재배 대추나무의 유전특성 분석)

  • Nam, Jae-Ik;Lee, Uk;Kim, Sea-Hyun
    • Journal of Korean Society of Forest Science
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    • v.107 no.4
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    • pp.378-384
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    • 2018
  • Chinese jujube (Ziziphus jujuba Mill.), a member of family Rhamnaceae, is an economically important species. It has high nutritional value in fruits, and its medicinal properties have led to extensive use in traditional oriental medicine. In this study, we investigated the genetic characteristics of 270 jujube germplasms collected from the six major jujube fruit production areas in Korea including Boeun and Gyeongsan, in order to understand the current situation on cultivated varieties of domestic jujube and to obtain useful data for selection of superior germplasms and establishing their breeding plans. The results of ISSR marker analysis revealed that the Shannon's information index of the 270 germplasms was 0.107 and the genetic similarity was as high as 0.935 showing the dominance of a specific cultivar or germplasm, and almost 67% (180) of them were identified at the same genotype with 'Bokjo'. The domestic commercial jujube populations could be characterized by very low genetic diversity and thus may be vulnerable to external disturbances. In addition, it seems that most of the jujube fruits in domestic market were largely produced through parthenocarpy.

Ecological Studies on the Forest Vegetation in the Mt. Joghe (조계산(曹溪山) 삼림식생(森林植生)의 생태학적(生態學的) 연구(硏究))

  • Chang, Seok Mo
    • Journal of Korean Society of Forest Science
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    • v.80 no.1
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    • pp.54-71
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    • 1991
  • To classify and analyze the forest communities and their structures, the vegetation in Mt. Joghe was investigated from July, 1980 to August, 1989. The results obtained are as follow ; 1. A total of 750 kinds of vascular plant(49 orders, 122 families, 434 genera, 627 species, 1 subspecies, 111 varieties and 11 forma)were observed in Mt. Ioghe. The newly observed plant species were Dioscorea quingueloba, Spiranthes sinensis, Cephalanthera falcata, Angelica gigas, Clematis patents, Paeonia obovata, Hibiscus mulabilis, Ainsliaea acerifolia, Dictamnus dasycarpus, Cynachum ascyrifolia, Vaccinium koreanum, Erythrortium japonicum, Indigofera kirilowii (17species), Broussonetia kazinoki var, humillis, Euonymus, fortunei var. radicans, Juniperus communis var, nippnnica, Callicarpa japonica var. radicans, Joniperus communis var. rzipponica, Callicarpa japonica var. taquetii (4 varieties) and L indera obtusiloba for. billosum (1 forma). 2. The life spectrum of flora in Mt. Joghe was classified into $CH-D_1-R_5-e$ type. Distribution area was identical to Southern type by Nakai, Lee, and Yim. A few subtropical species were also observed. 3. Simpson's species diversity index(Ds) was 0.9 and Shannon-Weiner's diversity index (H') was 1.004. These indice suggest that the vegetation in Mt. Joghe is of complicated forest communities. 4. Pte-Q was 1.81 which was higher than the nationwide mean of 1.68. Urbanization Index (UI) was 28.75 for naturalized plant species, and 17.49 for exotic woody plant species, which were similar to those of Mt. Baekun and Mt. Naejang. 5. The forest vegetation of Mt. Joghe was grouped in 3 vegetation types : 7 natural plant Communities dominated by Quercus serrat, Quercus acutissima, Quercus variabilis, Carpinus laxiflora, Pinus derasiflora and Platycarya strobilacea, 8 substitutional plant communities Styrax japonica, Stewartia koreana, Lindera erytlrrocarpa, Zelkova serrata, Rhtrs chinensis, Controversa, and Frzrxirtus manrlshurica, and 7 plantation Communities composed of Pinus koraiensis, Pinus rigida, Magnolia nbnvata, Chamecyparis obkrsa, Larie ieptolepis, Castanea crenata and Cryptomeria japonica. 6. Actual vegetation maps and profile diagrams were made by phytosocialogical classification. 7. As the important and unique species in Mt. Joghe, Lindera sericea, Penicaria tilitorme, Hex macropoda, Hex macropoda for. pseudo-macropoda, Steroartia koreana, Adenopkora palustris and Corylop.,is coreana, which were also seported by Lee(1977), Kim and Yark(1989), were identified and Vaccinium coreanum, Cremastra appendiculinium, Juniperus comminis van. nipponica, Cephalanthera falcata, Broussortetia kazinoki var. humilis, paeonia obovata, Deutzia prunifolia, Dictamnus dasyarpus, Angelica gigics and Bupleurum falcatum were odditionally observed.

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The Structure of Plant Community of the Woonsooam Valley in Jogyesan (Mt.), Suncheon (순천시 조계산 운수암 계곡부 식물군집구조)

  • Han, Bong-Ho;Choi, Jin-Woo;Noh, Tai-Hwan;Hur, Ji-Yeon
    • Korean Journal of Environment and Ecology
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    • v.28 no.1
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    • pp.45-54
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    • 2014
  • This study was carried out to investigate the ecological succession sere and conservative value, and to provide the basic data in Woonsooam Valley, in Jogyesan (Mt.) (altitude 884m), Suncheon City, Korea by analysing the structure of the plant community. Fifteen plots (size is $20m{\times}20m$) were set up at an altitude of range from 255m to 495m. As a result of analysis of DCA which is one of the ordination technique, the plant communities were divided into five groups which are community I (Pinus densiflora community), community II (Quercus variabilis-Quercus serrata community), community III (Q. serrata-Q. variabilis community), and community IV (Carpinus tschonoskii-Q. serrata community) and community v(Deciduous broad-leaved forest community). We found out that the vegetation of the study site located in the South Temperate Climate Zone. The study site is found out that Q. serrata community 34.4%, part of slope in valley is the distribution that dominant species is Q. serrata-Q. variabilis community 32.1%. And in valley showed Carpinus tschonoskii community 5.5%. And Sasa borealis was dominant species in the shrub layer. We couldn't supposed that the ecological succession sere of the study site, however we should do a long-term monitoring to investigate the changes of the ecological succession each plant community, According to the index of Shannon's diversity (unit: $400m^2$), community III was ranged from 1.0102 to 1.1013, community V was 0.9945, community II was ranged from 0.7913 to 1.1503, community IV was ranged from 0.8081 to 1.0749 and community I was 0.9273.

Metagenomic Analysis of Bacterial Communities in Rhododendron mucronulatum in Biseul Mountain County Park, Daegu, Korea (비슬산 군립공원의 진달래에 대한 박테리아 군집 metagenomics 분석 규명)

  • Choi, Doo-Ho;Jeong, Min-Ji;Kwon, Hae-Jun;Kim, Mi-Gyeong;Kim, Dong-Hyun;Kim, Young-Guk;Kim, Jong-Guk
    • Journal of Life Science
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    • v.30 no.1
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    • pp.32-39
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    • 2020
  • Rhododendron mucronulatum, native to Korea, Mongolia, Russia and parts of northern China, is known not only for its medicinal properties but also as a tourist attraction. One of the most famous tourist destinations with R. mucronulatum is in Biseul Mountain County Park, Daegu, Korea. To investigate the relationship between R. mucronulatum and microbiome communities in the surrounding soil, three sites within the park were chosen for sampling in February and August. The soil samples were then passed through a pyrosequencing process for analysis of the bacterial communities, and a total of 404,899 sequencing reads were obtained. Between 2,349 and 4,736 operational taxonomic units (OTUs) were observed across the three sampling zones and two seasons; samples from the park entrance showed a higher number of OTUs than the other two sites, and samples from August had more OTUs than those from February. The sample from the second observation site displayed the fewest OTUs, particularly in February. According to Chao1 and Shannon indices, samples from the park entrance in August demonstrated the highest degree of species richness and diversity. Studying the bacterial communities across the six samples identified the common population as comprising 287 genera, 45 of which are only present in Biseul Mountain County Park and are expected to participate in the colonization of R. mucronulatum.

Korean Paddy Soil Microbial Community Analysis Method Using Denaturing Gradient Gel Electrophoresis (Denaturing gradient gel electrophoresis를 이용한 한국의 논 토양 미생물 다양성 분석 방법)

  • Choe, Myeongeun;Hong, Sung-Jun;Lim, Jong-Hui;Kwak, Yunyoung;Back, Chang-Gi;Jung, Hee-Young;Lee, In-Jung;Shin, Jae-Ho
    • Journal of Applied Biological Chemistry
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    • v.56 no.2
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    • pp.95-100
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    • 2013
  • Soil microbes are important integral components of soil ecosystem which have significant and diverse role in organic matter decomposition, nitrogen cycling, and nitrogen fixation. In this study an effective denaturing gradient gel electrophoresis (DGGE) method was employed for paddy soil microbial diversity survey. For optimum paddy soil microbial DNA extraction, different methods such as Lysis buffer, skim milk bead, sodium phosphate buffer, Epicentre Soil Master DNA extraction kit (Epicentre, USA) and Mo Bio Power Soil DNA kit (MO BIO, USA) methods were utilized. Among all the method, using Mo Bio Power Soil kit was most effective. DGGE analysis of Bacteria was carried out at 6% polyacylamide gel and 45-60% denaturing gradient in the optimal conditions. Whereas DGGE analysis of fungi was done at 6% polyacrylamide gel and 45-80% denaturing gradient in the optimal conditions. By applying the above assay, it was found that variation within the microbial community of paddy soil occurs by a factor of time. DGGE assay used in this study through for a variety of soil microbial analysis suggests the potential use of this method.

Forest Structure in Relation to Altitude and Part of Slope in a Valley and a Ridge Forest at Mt. Gaya Area (가야산지역 계곡부와 능선부의 해발고와 사면부위에 따른 삼림구조)

  • 박인협;조재창;오충현
    • Korean Journal of Environment and Ecology
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    • v.3 no.1
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    • pp.42-50
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    • 1989
  • A valley and a ridge forest in Mt. Gaya area was studied to investigate forest structure in relation to altitude and part of slope. Sixty-three quadrats were set up in the valley forest along altitude of 600m to 1,000m and part of slope, and thirty-eight quadrats were set up in the ridge forest along altitude of 700m to 1,430m. According to the importance values, the valley forest was Quercus mongolica-Lespedeza maximowiczii community and the ridge forest was Pinus densiflora, Quercus mongolica-Rhododendron mucronulatum community. Similarity index between the valley forest community and the ridge forest community was 37.2%. Shannon's species diversities of the valley forest community and the ridge forest community were 1.3402 and 1.0098, respectively. According to importance values by crown stories and DCA ordination, successional trends of tree species may be from Pinus densiflora and Pinus koraiensis through Quercus mongolica to Quercus serrata and Carpinus laxiflora. As going from the lower part to upper part of the slope in the valley forest, the importance values of Quercus mongolica, Quercus aliena, Rhododendron mucronulatum and Lespedeza maximowiczii increased while those of Carpinus laxiflora and Fraxinus rhynchophylla decreased. With increasing elevation in the valley and ridge forest, the importance value of Pinus densiflora decreased while that of Quercus mongolica increased. In the valley forest, densities of canopy and shrubstratum increased as increasing elevation, and the number of species and species diversity decreased as increasing elevation and going from the lower part to the upper of slope. The range of similarity indices between parts of the slope, and the elevation belts of 100m in the valley forest were 66.6-69.2 and 25.9-79.8%, respectively. In the ridge forest, density and basal area of canopy tended to decreased as increasing elevation, and the range of similarity indices between elevation belts of 100m was 27.9-98.2%.

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Community Analysis of Oribatid Mites (Acari : Oribatida) in the Process of Needle Leaf Decomposition in Korean Pine (Pinus koraiensis) Forest of Namsan and Kwangreung (남산과 광릉지역의 잣나무림에서 낙엽분해과정에 관련된 날개응애 군집분석)

  • 배윤환
    • The Korean Journal of Soil Zoology
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    • v.6 no.1_2
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    • pp.25-31
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    • 2001
  • Oribatid mite communities in the process of litter decomposition were analyzed In Korean pine (Pinus koraiensis) forests of Namsan and Kwangreung, which were supposed to be under different environmental selective pressures. Oribatid mites were collected bimonthly from the litter bags (mesh size 0.4 mm, 1.7 mm) which was set up in the forest floor of study sites. This study had been carried out from Jan., 1997 to Sept., 1998. Species abundance of Kwangreung (mesh size 1.7 mm) was significantly higher than that of Namsan (mesh size 1.7 mm), but total no. of species did not exceed 30 species in all study sites. Concerning body length, medium sized oribatid mites (0.3-0.7mm) were more abundant than small ( < 0.3 mm) and large ( > 0.7 mm) sized mites. In Kwangreung, species whose body lengths were 0.2 mm to 0.5 mm were major group. However, a little larger species than Kwangreung's major group were dominant in Namsan. Sorenson similarity index and cluster analysis suggested that there were qualitative and quantitative differences in species composition in Namsan and Kwangreung. More species were collected in May through September than the other sampling times, but the pattern was rather different between first year and second year. Newly immigrant species were high in May in the first year and many of them regained on next year. Diversity indices suggested that species diversity of Kwangreung was higher than that of Namsan. Nearly 70% of total individual abundance was occupied by several dominant species in Namsan and Kwangreung . In the litter bags of mesh size 1.7 mm, the most dominant species was Trichogalumna nipponica in Namsan and Kwangreung, but in the litter bags of mesh size 0.4 mm in Kwangreung it was Ramusella sengbuschi which is smaller than T. nipponica. And important species related to litter decomposition were selected as follows; T. nipponica, Epidamaeus coreanus, Scheloribates latipes, Ceratozetes japonicus, Ramusella sengbuschi, Eohypochthonius crassisetiger, and Cultroribula lata.

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Comparative Analysis of Gut Microbiota among Broiler Chickens, Pigs, and Cattle through Next-generation Sequencing (차세대염기서열 분석을 이용한 소, 돼지, 닭의 장내 미생물 군집 분석 및 비교)

  • Jeong, Ho Jin;Ha, Gwangsu;Shin, Su-Jin;Jeong, Su-Ji;Ryu, Myeong Seon;Yang, Hee-Jong;Jeong, Do-Youn
    • Journal of Life Science
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    • v.31 no.12
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    • pp.1079-1087
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    • 2021
  • To analyze gut microbiota of livestock in Korea and compare taxonomic differences, we conducted 16S rRNA metagenomic analysis through next-generation sequencing. Fecal samples from broiler chickens, pigs, and cattle were collected from domestic feedlots randomly. α-diversity results showed that significant differences in estimated species richness estimates (Chao1 and ACE, Abundance-based coverage estimators) and species richness index (OUTs, Operational taxonomic units) were identified among the three groups. However, NPShannon, Shannon, and Simpson indices revealed that abundance and evenness of the species were statistically significant only for poultry (broiler chickens) and mammals (pigs and cattle). Firmicutes was the most predominant phylum in the three groups of fecal samples. Linear discriminant (LDA) effect size (LEfSe) analysis was conducted to reveal the ranking order of abundant taxa in each of the fecal samples. A size-effect over 2.0 on the logarithmic LDA score was used as a discriminative functional biomarker. As shown by the fecal analysis at the genus level, broiler chickens were characterized by the presence of Weissella and Lactobacillus, as well as pigs were characterized by the presence of provetella and cattele were characterized by the presence of Acinetobacter. A permutational multivariate analysis of variance (PERMANOVA) showed that differences of microbial clusters among three groups were significant at the confidence level. (p=0.001). This study provides basic data that could be useful in future research on microorganisms associated with performance growth, as well as in studies on the livestock gut microbiome to increase productivity in the domestic livestock industry.