Metagenomic Analysis of Bacterial Communities in Rhododendron mucronulatum in Biseul Mountain County Park, Daegu, Korea |
Choi, Doo-Ho
(School of Life Science and Biotechnology, Kyungpook National University)
Jeong, Min-Ji (School of Life Science and Biotechnology, Kyungpook National University) Kwon, Hae-Jun (School of Life Science and Biotechnology, Kyungpook National University) Kim, Mi-Gyeong (School of Life Science and Biotechnology, Kyungpook National University) Kim, Dong-Hyun (School of Life Science and Biotechnology, Kyungpook National University) Kim, Young-Guk (School of Life Science and Biotechnology, Kyungpook National University) Kim, Jong-Guk (School of Life Science and Biotechnology, Kyungpook National University) |
1 | Aslam, Z., Lee, C. S., Kim, K. H., Im, W. T., Ten, L. N. and Lee, S. T. 2007. Methylobacterium jeotgali sp. nov., a nonpigmented, facultatively methylotrophic bacterium isolated from jeotgal, a traditional Korean germented seafood. Int. J. Syst. Evol. Microbiol. 57, 566-571. DOI |
2 | Caro-Quintero, A. and Konstantinidis, K. T. 2012. Bacterial species may exist, metagenomics reveal. Environ. Microbiol. 14, 347-355. DOI |
3 | Castelino, M., Eyre, S., Moat, J., Fox, G., Martin, P., Ho, P., Upton, M. and Barton, A. 2017. Optimisation of methods for bacterial skin microbiome investigation: primer selection and comparison of the 454 versus MiSeq platform. BMC Microbiol. 17, 23. DOI |
4 | Chun, J., Kim, K. Y., Lee, J. H. and Choi, Y. 2010. The analysis of oral microbial communities of wild-type and toll-like receptor 2-deficient mice using a 454 GS FLX Titanium pyrosequencer. BMC Microbiol. 10, 101. DOI |
5 | de Oliveira, L. S., Tschoeke, D. A., Magalhaes Lopes, A. C. R., Sudatti, D. B., Meirelles, P. M., Thompson, C. C., Pereira, R. C. and Thompson, F. L. 2017. Molecular mechanisms for microbe recognition and defense by the red seaweed Laurencia dendroidea. mSphere 2, pii:e00094-17. |
6 | Espinosa, E., Marco-Noales, E., Gomez, D., Lucas-Elio, P., Ordax, M., Garcias-Bonet, N., Duarte, C. M. and Sanchez-Amat, A. 2010. Taxonomic study of Marinomonas strain isolated from the seagrass Posidonia oceanica, with descriptions of Marinomonas balearica sp. Nov. and Marinomonas pollencensis sp. nov. Int. J. Syst. Evol. Microbiol. 60, 93-98. DOI |
7 | Handelsman, J., Rondon, M. R., Brady, S. F., Clardy, J. and Goodman, R. M. 1998. Molecular biological access to the chemistry of unknown soil microbes: A new frontier for natural products. Chem. Biol. 5, 245-249. DOI |
8 | Healy, F. G., Ray, R. M., Aldrich, H. C., Wilkie, A. C., Ingram, L. O. and Shanmugam, K. T. 2295. Direct isolation of functional genes encoding cellulases from the microbial consortia in a thermophilic, anaerobic digester maintained on lignocellulose. Appl. Microbiol. Biotechnol. 43, 667-674. DOI |
9 | Balvociute, M. and Huson, D. H. 2017. SILVA, RDP, Greengenes, NCBI and OTT - how do these taxonomies compare. BMC Genomics 18, 114. DOI |
10 | Hughes, J. B., Hellmann, J. J., Ricketts, T. H. and Bohannan, B. J. 2001. Counting the uncountable: statistical approaches to estimating microbial diversity. Appl. Environ. Microbiol. 67, 4399-4406. DOI |
11 | Jo, Y., Oh, Y. S., Woo, S. O., Park, C. H. and Yum, S. 2019. Metagenomic analysis of bacterial communities associated with four Ecklonia cava populations, including Dokdo Island population. Taxicol. Environ. Health. Sci. 11, 11-18. DOI |
12 | Jung, J. Y., Lee, S. H., Kim, J. M., Park, M. S., Bae, J. W., Hahn, Y., Madsen, E. L. and Jeon, C. O. 2011. Metagenomic analysis of Kimchi, a traditional Korean fermented food. Appl. Environ. Microbiol. 77, 2264-2274. DOI |
13 | Kim, M., Yoon, H., You, Y. H., Kim, Y. E., Woo, J. R., Seo, Y., Lee, G. M., Kim, Y. J., Kong, W. S. and Kim, J. G. 2013. Metagenomic analysis of fungal communities inhabiting the fairy ring zone of Tricholoma matsutake. J. Microbiol. Biotechnol. 23, 1347-1356. DOI |
14 | Lemos, L. N., Fulthorpe, R. R., Triplett, E. W. and Roesch, L. F. 2011. Rethinking microbial diversity analysis in the high throughput sequencing era. J. Microbiol. Methods 86, 42-51. DOI |
15 | Mok, S. Y. and Lee, S. 2012. Identification of flavonoids and flavonoid rhamnosides from Rhododendron mucronulatum for. albiflorum and their inhibitory activities against aldose reductase. Food Chem. 123, 969-974. |
16 | Rosenblueth, M. and Martinez-Romero, E. 2006. Bacterial endophytes and their interactions with hosts. Mol. Plant Microbe Interact. 19, 827-837. DOI |
17 | Takeuchi, M., Katayama, T., Yamagishi, T., Hanada, S., Tamaki, H., Kamagata, Y., Oshima, K., Hattori, M., Marumo, K., Nedachi, M., Maeda, H., Suwa, Y. and Sakata, S. 2014. Methyloceanibacter caenitepidi gen. nov., sp. nov., a facultatively methylotrophic bacterium isolated from marine sediments near a hydrothermal vent. Int. J. Syst. Evol. Microbiol. 64, 462-468. DOI |
18 | Vaario, L. M., Fritze, H., Spetz, P., Heinonsalo, J., Hanajik, P. and Pennanen, T. 2011. Tricholoma matsutake dominates diverse microbial communities in different forest soil. Appl. Environ. Microbiol. 77, 8523-8531. DOI |
19 | Vandenkoornhuyse, P., Sarjala, S. L., Leyval, C., Straczek, J. and Young, J. P. 2002. Extensive fungal diversity in plant roots. Science 295, 2051. DOI |
20 | Wang, G., Shuai, L., Li, Y., Lin, W., Zhao, X. and Duan, D. 2008. Phylogenetic analysis of epiphytic marine bacteria on Hole-Rotten diseased sporophytes of Laminaria japonica. J. Appl. Phycol. 20, 403-409. DOI |
21 | Wang, Q., Garrity, G. M., Tiedje, J. M. and Cole, J. R. 2007. Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy. Appl. Environ. Microbiol. 73, 5261-5267. DOI |
22 | Zehr, J. P., Jenkins, B. D., Short, S. M. and Steward, G. F. 2003. Nitrogenase gen diversity and microbial community structure: a cross-system comparison. Environ. Microbiol. 5, 539-554. DOI |
23 | Zinger, L., Coissac, E., Choler, P. and Geremia, R. A. 2009. Assessment of microbial communities by graph partitioning in a study of soil fungi in two alpine meadows. Appl. Environ. Microbiol. 75, 5863-5870. DOI |