• Title/Summary/Keyword: S-MARS

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Two Novel Families of Short Interspersed Repetitive Elements from the Mud Loach (Misgurnus mizolepis)

  • Lim, Hak-Seob;Kim, Moo-Sang;Kim, Ok-Soon;Kim, Ji-Yeon;Choi, Young-Mi;Ahn, Sang Jung;Lee, Hyung-Ho
    • Journal of Marine Bioscience and Biotechnology
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    • v.1 no.3
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    • pp.186-192
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    • 2006
  • Short interspersed repetitive elements (SINEs) are dispersed throughout eukaryotic genomes. These SINEs have been shown to be excellent phylogenetic markers for the closed related species. In this report, we isolated two novel families of SINEs from the mud loach. The two SINE families, mlSINE-L and mlSINE-S, have genomic lengths of about 410bp and 270bp, respectively. 5' and 3' ends of the SINE families are well conserved and highly homologous to each of corresponding ends of RSg-1 and SmaI SINEs. Phylogenetic analysis shows that mlSINEs are unique to the mud loach. A dot blot hybridization experiment shows that mlSINE-L has an estimated copy number of $1{\times}10^3$ per $2{\times}10^9bp$ (2.8 pg) and is more frequently distributed at nuclear matrix attachment regions (MARs) than loop DNAs. The result suggests that mlSINEs may preferentially integrate in or near MARs.

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High Performance Hardware Implementation of the 128-bit SEED Cryptography Algorithm (128비트 SEED 암호 알고리즘의 고속처리를 위한 하드웨어 구현)

  • 전신우;정용진
    • Journal of the Korea Institute of Information Security & Cryptology
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    • v.11 no.1
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    • pp.13-23
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    • 2001
  • This paper implemented into hardware SEED which is the KOREA standard 128-bit block cipher. First, at the respect of hardware implementation, we compared and analyzed SEED with AES finalist algorithms - MARS, RC6, RIJNDAEL, SERPENT, TWOFISH, which are secret key block encryption algorithms. The encryption of SEED is faster than MARS, RC6, TWOFISH, but is as five times slow as RIJNDAEL which is the fastest. We propose a SEED hardware architecture which improves the encryption speed. We divided one round into three parts, J1 function block, J2 function block J3 function block including key mixing block, because SEED repeatedly executes the same operation 16 times, then we pipelined one round into three parts, J1 function block, J2 function block, J3 function block including key mixing block, because SEED repeatedly executes the same operation 16 times, then we pipelined it to make it more faster. G-function is implemented more easily by xoring four extended 4 byte SS-boxes. We tested it using ALTERA FPGA with Verilog HDL. If the design is synthesized with 0.5 um Samsung standard cell library, encryption of ECB and decryption of ECB, CBC, CFB, which can be pipelined would take 50 clock cycles to encrypt 384-bit plaintext, and hence we have 745.6 Mbps assuming 97.1 MHz clock frequency. Encryption of CBC, OFB, CFB and decryption of OFB, which cannot be pipelined have 258.9 Mbps under same condition.

IP Multicasting Scheme in ATM Networks (ATM망에서 다중 멀티캐스팅 서버를 이용한 IP 멀티캐스팅 방안)

  • Byeon, Tae-Yeong;Jang, Seong-Sik;Han, Gi-Jun
    • Journal of KIISE:Computer Systems and Theory
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    • v.26 no.9
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    • pp.1145-1157
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    • 1999
  • 본 논문에서는 RFC 2022에서 제안한 MARS 모델을 기반으로 하여 단일 대규모 클러스터를 가지는 ATM 망에서 다중의 멀티캐스팅 서버(MCS)를 이용한 멀티캐스팅 방안을 제안하고 그 성능을 평가하였다. 클러스터 내의 한 ATM 호스트가 특정 IP 멀티캐스트 그룹에 가입할 경우 ATM 호스트의 위치와 이미 존재하는 멀티캐스팅 서버들 사이의 전송 지연을 고려하여 가능한 한 종단간 전송 지연을 최소화하는 멀티캐스팅 서버를 선택하는 방안을 기술하였다. 이 방안은 최단거리 경로 알고리즘(shortest path algorithm)에 기반하여 최적의 MCS를 선정하고 송수신자 사이의 최소 지연을 가지는 멀티캐스트 트리를 구성한다. 다양한 망 위상에서 MCS의 분포 패턴을 다르게 할 경우에도 이 방안은 멀티캐스트 트리의 평균 전달 지연을 줄이는 것을 시뮬레이션을 통하여 확인하였다.Abstract In this paper, we proposed a scheme to support multiple MCSs over a single and large cluster in ATM networks, evaluated its performance by simulation. When an ATM host requests joining into a specific multicast group, the MARS designate a proper MCS among the multiple MCSs for the group member to minimize the average path delay between the sender and the group members. This scheme constructs a multicast tree through 2-phase partial multicast tree construction based upon the shortest path algorithm.We reduced the average path delay in multicast tree using our scheme under various cluster topologies and MCS distribution scenarios.

Cloning and Characterization of Replication Origins from Misgurnus mizolepis (미꾸라지로부터의 복제원점 클로닝 및 그 특성에 관한 연구)

  • Lim Hak-Seob;Kim Moo-Sang;Lee Hyung-Ho
    • Journal of Aquaculture
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    • v.8 no.3
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    • pp.209-220
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    • 1995
  • The nuclear matrix was isolated from Misgumus mizolepis liver nuclei by low salt extraction and restriction enzyme treatment. The structure was digested with proteinase K. After centrifugation, matrix attachment regions (MARs) were obtained by RNase treatment and phenol-chloroform extraction. The result leads to the appearance of smeared bands in the range of about 0.3-15 kb. pURY19 vector was constructed by inserting 2.13 kb Eco47 III fragment of the yeast uracil 3 gene into the unique Ssp I site of pUC19 plasmid vector as a selection marker. This vector is unable to be maintained in Sacrharomyces cerevisiae by itself since it cannot replicate as an extrachromosomal element. Using this system, we attempted cloning the ARS (autonomously replicating sequence) from M. mizelepis to develop an efficient expression vector for the transgenic fish. pURY19N_{l-62}$ were constructed by inserting MARs in pURY19 plasmid vector and transformation of E. coli $DH5\alpha$. Replication origins (ARS) of M. mizolepis were isolated, which enabled the vector to replicate autonomously in S. cerevisiae. The cloned DNA fragments were sequenced by Sanger's dideoxy-chain termination method. All clones were AT-rich. $pURY19N_6$, one of the clones, expecially contained ARS consensus sequence, Topoisomerase II consensus, near A-box and T-box.

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Implementation of a Medical Information Transmission Protocol Based on Mobile Wireless Communication (무선 이동통신 기술에 기반한 의료 정보 전송 프로토콜 구현)

  • 정희창;한민수
    • Journal of Biomedical Engineering Research
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    • v.19 no.1
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    • pp.19-24
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    • 1998
  • The main goal of this paper is to propose and to test a radio protocol based CSMA/CA (Carrier Sense Multiple Access with Collision Avoidance) for the purpose of enhancing the existing medical information system. The feature of the new medical information system, Medical Application Radio System(MARS), which operating in real time is the transmission of medical information in bi-direction between the hospital control office and patients mobile stations. MARS monitors patients linked to the network by radio and provides quick alarm, flexible documentation capabilities, asnd fast treatment for the analysis of collected medical data. The existing medical information system, radio telemetry system which transfers the message of patients to the CAP(Central Access Point) unit in one way at the speed of 9.6Kbps and operates a channel frequency bandwidth. To verify the Performance of the proposed system, we have performed the numerical analysis and have implemented a test system which consists of the 2.4Ghz radio transceiver and personal computer.

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Development of a thermal-hydraulic analysis code for once-through steam generators using straight tubes for SMRs (일체형 원자로용 관류식 직관형 증기발생기 열수력 해석 코드 개발)

  • Park, Youngjae;Kim, Iljin;Kang, Kyungjun;Kang, Hanok;Kim, Youngin;Kim, Hyungdae
    • Journal of Energy Engineering
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    • v.24 no.2
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    • pp.91-102
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    • 2015
  • A thermal-hydraulic design and performance analysis computer code for a once-through steam generator using straight tubes is developed. To benchmark the developed physical models and computer code, an once-through steam generator developed by other designer is simulated and the calculated results are compared with the design data. Also, the same steam generator is analyzed with the best-estimate thermal-hydraulic system code, MARS, for the code-to-code validation. The overall characteristics of heat transfer area, pressure and temperature distributions calculated by the developed code show general agreements with the published design data as well as the analysis results of MARS. It is demonstrated that the developed code can be utilized for diverse purposes, such as, sensitivity analyses and optimum thermal design of a once-through steam generator.

Application of machine learning models for estimating house price (단독주택가격 추정을 위한 기계학습 모형의 응용)

  • Lee, Chang Ro;Park, Key Ho
    • Journal of the Korean Geographical Society
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    • v.51 no.2
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    • pp.219-233
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    • 2016
  • In social science fields, statistical models are used almost exclusively for causal explanation, and explanatory modeling has been a mainstream until now. In contrast, predictive modeling has been rare in the fields. Hence, we focus on constructing the predictive non-parametric model, instead of the explanatory model. Gangnam-gu, Seoul was chosen as a study area and we collected single-family house sales data sold between 2011 and 2014. We applied non-parametric models proposed in machine learning area including generalized additive model(GAM), random forest, multivariate adaptive regression splines(MARS) and support vector machines(SVM). Models developed recently such as MARS and SVM were found to be superior in predictive power for house price estimation. Finally, spatial autocorrelation was accounted for in the non-parametric models additionally, and the result showed that their predictive power was enhanced further. We hope that this study will prompt methodology for property price estimation to be extended from traditional parametric models into non-parametric ones.

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Development of stability maps for flashing-induced instability in a passive containment cooling system for iPOWER

  • Lim, Sang Gyu;No, Hee Cheon;Lee, Sang Won;Kim, Han Gon;Cheon, Jong;Lee, Jae Min;Ohk, Seung Min
    • Nuclear Engineering and Technology
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    • v.52 no.1
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    • pp.37-50
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    • 2020
  • A passive containment cooling system (PCCS) has been developed as advanced safety feature for innovative power reactor (iPOWER). Passive systems are inherently less stable than active systems and the PCCS encountered the flashing-induced instability previously identified. The objective of this study is to develop stability maps for flashing-induced instability using MARS (Multi-dimensional Analysis of Reactor Safety) code. Firstly, we conducted a series of sensitivity analysis to see the effects of time step size, nodalization, and alternative MARS user options on the onset of flashing-induced instability. The riser nodalization strongly affects the prediction of flashing in a long riser of the PCCS, while time step size and alternative user options do not. Based on the sensitivity analysis, a standard input and an analysis methodology were set up to develop the stability maps of PCCS. We found out that the calculated equilibrium quality at the exit of the riser as a stability boundary above 5 kW/㎡ was approximately 1.2%, which was in good agreement with Furuya's results. However, in case of a very low heat flux condition, the onset of instability occurred at the lower equilibrium quality. In addition, it was confirmed that inlet throttling reduces the unstable region.