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Screening of Differentially Expressed Genes between PC12 Cells and A123.7 Cells (PC12 세포와 A123.7 세포에서 차별적으로 발현되는 유전자의 검색)

  • Baik, Seung-Youn;Yang, Byung-Hwan;Chai, Young-Gyu
    • Korean Journal of Biological Psychiatry
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    • v.6 no.1
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    • pp.67-73
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    • 1999
  • The cAMP-dependent protein kinase(PKA) is an intracellular enzyme with serine-threonine kinase activity that plays a key role in cell growth, differentiation, and apoptosis in eukaryotes. In order to understand the PKA signal transduction pathway regulating cell life cycle and identify its role, we focused on the characterization of up-/down-regulated genes by PKA using the differential display polymerase chain reaction. Seven differentially expressed sequence tags(DEST) have been obtained. Among these DESTs, 2 DESTs were homologous to the sequence of genes from BLAST search result. KC1-5 DEST that was up-regulated in A123.7 cells was highly corresponded to mouse apoptosis-related gene(MA-3) or mouse mRNA for topoisomerase inhibitor suppressed(TIS). MA-3 was induced in various types of apoptosis, specially in NGF-deprived apoptotic PC12 cells. TIS was down-regulated in the RVC lymphoma cells incubated with topoisomerase inhibitor that induces DNA strand breakages. PG1-1 DEST that was highly expressed in PC12 cells was corresponded to transposon Tn10 3'-end. Tnansposon Tn10 was up-regulated in differentiated myeloblastic ML-1 cells by 12-O-tetradecanoylphorbol-13-acetate. This study illuminates that MA-3/TIS was down-regulated by PKA activity, and transposon Tn10 was up-regulated by it.

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Molecular Characterization of the Ocular EST Clones from Olive Flounder, Paralichthys olivaceus

  • Lee, Jeong-Ho;Noh, Jae-Koo;Kim, Hyun-Chul;Park, Choul-Ji;Min, Byung-Hwa;Ha, Su-Jin;Park, Jong-Won;Kim, Young-Ok;Kim, Jong-Hyun;Kim, Kyung-Kil;Kim, Woo-Jin;Myeong, Jeong-In
    • Development and Reproduction
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    • v.14 no.2
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    • pp.107-113
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    • 2010
  • The olive flounder (Paralichthys olivaceus) is one of the most widely cultured flatfish in Korea and Japan. During development, in a process known as metamorphosis, this fish reorients itself to lie on one side, the body flattens, and the eye migrates to the other side of the body. However, few studies have focused on molecule regulation mechanism of eye development in olive flounder. To reveal the molecular mechanism of eye development, we performed the studies on identification of genes expressed in the eye of olive flounder using EST and RT-PCR strategy. A total of 270 ESTs were sequenced, and 178 (65.9%) clones were identified as known genes and 92 (34.1%) as unknown genes. Among the 178 EST clones, 29 (16.3%) clones were representing 9 unique genes identified as homologous to the previously reported olive flounder ESTs, 131 (73.6%) clones representing 107 unique genes were identified as orthologs of known genes from other organisms. We also identified a kind of eye development associated proteins, indicating EST as a powerful method for identifying eye development-related genes of fish as well as identifying novel genes. Further functional studies on these genes will provide more information on molecule regulation mechanism of eye development in olive flounder.

Density-Based Estimation of POI Boundaries Using Geo-Tagged Tweets (공간 태그된 트윗을 사용한 밀도 기반 관심지점 경계선 추정)

  • Shin, Won-Yong;Vu, Dung D.
    • The Journal of Korean Institute of Communications and Information Sciences
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    • v.42 no.2
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    • pp.453-459
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    • 2017
  • Users tend to check in and post their statuses in location-based social networks (LBSNs) to describe that their interests are related to a point-of-interest (POI). While previous studies on discovering area-of-interests (AOIs) were conducted mostly on the basis of density-based clustering methods with the collection of geo-tagged photos from LBSNs, we focus on estimating a POI boundary, which corresponds to only one cluster containing its POI center. Using geo-tagged tweets recorded from Twitter users, this paper introduces a density-based low-complexity two-phase method to estimate a POI boundary by finding a suitable radius reachable from the POI center. We estimate a boundary of the POI as the convex hull of selected geo-tags through our two-phase density-based estimation, where each phase proceeds with different sizes of radius increment. It is shown that our method outperforms the conventional density-based clustering method in terms of computational complexity.

The Effective Blog Search Algorithm based on the Structural Features in the Blogspace (블로그의 구조적 특성을 고려한 효율적인 블로그 검색 알고리즘)

  • Kim, Jung-Hoon;Yoon, Tae-Bok;Lee, Jee-Hyong
    • Journal of KIISE:Software and Applications
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    • v.36 no.7
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    • pp.580-589
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    • 2009
  • Today, most web pages are being created in the blogspace or evolving into the blogspace. A blog entry (blog page) includes non-traditional features of Web pages, such as trackback links, bloggers' authority, tags, and comments. Thus, the traditional rank algorithms are not proper to evaluate blog entries because those algorithms do not consider the blog specific features. In this paper, a new algorithm called "Blog-Rank" is proposed. This algorithm ranks blog entries by calculating bloggers' reputation scores, trackback scores, and comment scores based on the features of the blog entries. This algorithm is also applied to searching for information related to the users' queries in the blogspace. The experiment shows that it finds the much more relevant information than the traditional ranking algorithms.

An Automated Technique for Illegal Site Detection using the Sequence of HTML Tags (HTML 태그 순서를 이용한 불법 사이트 탐지 자동화 기술)

  • Lee, Kiryong;Lee, Heejo
    • Journal of KIISE
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    • v.43 no.10
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    • pp.1173-1178
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    • 2016
  • Since the introduction of BitTorrent protocol in 2001, everything can be downloaded through file sharing, including music, movies and software. As a result, the copyright holder suffers from illegal sharing of copyright content. In order to solve this problem, countries have enacted illegal share related law; and internet service providers block pirate sites. However, illegal sites such as pirate bay easily reopen the site by changing the domain name. Thus, we propose a technique to easily detect pirate sites that are reopened. This automated technique collects the domain names using the google search engine, and measures similarity using Longest Common Subsequence (LCS) algorithm by comparing the tag structure of the source web page and reopened web page. For evaluation, we colledted 2,383 domains from google search. Experimental results indicated detection of a total of 44 pirate sites for collected domains when applying LCS algorithm. In addition, this technique detected 23 pirate sites for 805 domains when applied to foreign pirate sites. This experiment facilitated easy detection of the reopened pirate sites using an automated detection system.

Design and Evaluation of a User Tag-based Retrieval Model for Electronic Journals within Electronic Resource Management Systems (전자자원관리시스템의 이용자 태그 기반의 전자저널 검색 모형 설계 및 평가에 관한 연구)

  • Kang, Jeong-Won;Kim, Hyun-Hee
    • Journal of the Korean Society for Library and Information Science
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    • v.43 no.4
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    • pp.241-264
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    • 2009
  • The study proposed an electronic journal retrieval model to be used to improve the retrieval efficiency of e-journals. To do this, firstly, we reviewed the literature on users' information behavior and on ERM (Electronic Resource Management) systems. Secondly, we conducted an e-mail survey of 96 participants (professors and graduate students) to find out about their information behavior on how to access, use and evaluate electronic resources as well as scientific information. Thirdly, we administered case studies on two ERMSs, Ex Libris' Verde and Innovative's Millennium. The proposed model will be operated within ERM systems and it enables to the supply of both system- and user-based services by combining taxonomy-based ERM systems with tag folksonomy. The model is unique in that it includes not only the automatic tagging functions that can be performed using log files but also the tag management functions including grouping similar or related tags.

Document Management System using XML/EDI in Education Web (교육망에 XML/EDI를 도입한 문서 관리 시스템)

  • Ko, Min-Jung;Chae, Ki-Joon
    • The Journal of Korean Association of Computer Education
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    • v.3 no.1
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    • pp.151-160
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    • 2000
  • Public and private schools have close relationship with education-related organizations and they have exchanged formal documents to communicate each other. Introducing the XML/EDI used in electronic-commerce to the education web will make a great benefit for decreasing affairs in educational administration. In this paper, we implement a document management system using XML/EDI. This system makes it possible to treat documents which are not supported in current education-information-exchange system and can be added to the current system without any additional modification. We analyze the documents used in the current system and implement new types of tags suitable for education web. In addition, we difine new documents and DTD using only XML without any application software. This will have effects on reducing teacher's administrative work and enable teachers to concentrate on their teaching.

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Performance Modeling of an EPC Information Service System

  • Kim, So-Jung;Kang, Yong-Shin;Son, Kyung-Won;Lee, Yong-Han;Rhee, Jong-Tae;Hong, Sung-Jo
    • Industrial Engineering and Management Systems
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    • v.9 no.3
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    • pp.285-293
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    • 2010
  • To obtain visible and traceable information from the supply chain, HW/SW standards for the EPC global network, which process electronic product code (EPC) data read from Radio frequency identification (RFID) tags, are regarded as the de facto industry standard. Supply chain participants install information service systems and provide logistics information to partners by following the EPCglobal architecture framework. Although quality of service (QoS) is essential for providing dependable and scalable services as pointed out by Auto-ID Lab, only a few models for the performance analysis of QoS-related work have been developed in the context of EPC information service systems. Specifically, doing so allows alternative design choices to be tested in an easy and cost-effective manner and can highlight potential performance problems in designs long before any construction costs are incurred. Thus, in this study we construct a model of an EPC information service system for the purposes of performance analysis and designing a dependable system. We also develop a set of building blocks for analytical performance models. To illustrate how the model works, we determine the characteristics of an EPC information service system and then select a combination of these proven modeling concepts. We construct a performance model that considers the response time and shows how to derive meaningful performance values. Finally, we compare the analytical results to measurements of the EPC information service system.

A Web Contents Ranking System using Related Tag & Similar User Weight (연관 태그 및 유사 사용자 가중치를 이용한 웹 콘텐츠 랭킹 시스템)

  • Park, Su-Jin;Lee, Si-Hwa;Hwang, Dae-Hoon
    • Journal of Korea Multimedia Society
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    • v.14 no.4
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    • pp.567-576
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    • 2011
  • In current Web 2.0 environment, one of the most core technology is social bookmarking which users put tags and bookmarks to their interesting Web pages. The main purpose of social bookmarking is an effective information service by use of retrieval, grouping and share based on user's bookmark information and tagging result of their interesting Web pages. But, current social bookmarking system uses the number of bookmarks and tag information separately in information retrieval, where the number of bookmarks stand for user's degree of interest on Web contents, information retrieval, and classification serve the purpose of tag information. Because of above reason, social bookmarking system does not utilize effectively the bookmark information and tagging result. This paper proposes a Web contents ranking algorithm combining bookmarks and tag information, based on preceding research on associative tag extraction by tag clustering. Moreover, we conduct a performance evaluation comparing with existing retrieval methodology for efficiency analysis of our proposed algorithm. As the result, social bookmarking system utilizing bookmark with tag, key point of our research, deduces a effective retrieval results compare with existing systems.

Lost and Found Registration and Inquiry Management System for User-dependent Interface using Automatic Image Classification and Ranking System based on Deep Learning (딥 러닝 기반 이미지 자동 분류 및 랭킹 시스템을 이용한 사용자 편의 중심의 유실물 등록 및 조회 관리 시스템)

  • Jeong, Hamin;Yoo, Hyunsoo;You, Taewoo;Kim, Yunuk;Ahn, Yonghak
    • Convergence Security Journal
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    • v.18 no.4
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    • pp.19-25
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    • 2018
  • In this paper, we propose an user-centered integrated lost-goods management system through a ranking system based on weight and a hierarchical image classification system based on Deep Learning. The proposed system consists of a hierarchical image classification system that automatically classifies images through deep learning, and a ranking system modules that listing the registered lost property information on the system in order of weight for the convenience of the query process.In the process of registration, various information such as category classification, brand, and related tags are automatically recognized by only one photograph, thereby minimizing the hassle of users in the registration process. And through the ranking systems, it has increased the efficiency of searching for lost items by exposing users frequently visited lost items on top. As a result of the experiment, the proposed system allows users to use the system easily and conveniently.

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