• Title/Summary/Keyword: Regulatory Network

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Discovering cis-regulatory motifs by combining multiple predictors

  • Chang, Hye-Shik;Hwang, Kyu-Woong;Kim, Dong-Sup
    • Bioinformatics and Biosystems
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    • v.2 no.2
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    • pp.52-57
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    • 2007
  • The computational discovery of transcription factor binding site is one of the important tools in the genetic and genomic analysis. Rough prediction of gene regulation network and finding possible co-regulated genes are typical applications of the technique. Countless motif-discovery algorithms have been proposed for the past years. However, there is no dominant algorithm yet. Each algorithm does not give enough accuracy without extensive information. In this paper, we explore the possibility of combining multiple algorithms for the one integrated result in order to improve the performance and the convenience of researchers. Moreover, we apply new high order information that is reorganized from the set of basis predictions to the final prediction.

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Asymmetric Regulation of Mobile Access Charges and Consumer Welfare with Price Regulation

  • Lee, Jong-Yong;Lee, Duk-Hee;Jung, Choong-Young
    • ETRI Journal
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    • v.32 no.3
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    • pp.447-456
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    • 2010
  • Asymmetric regulation as applied to mobile termination rates refers to regulatory arrangements in which different mobile operators charge different termination rates, even though the services provided are essentially identical. The asymmetric regulation has been frequently used as a regulatory tool to support new entrants to a mobile market. This paper examines the economic effects of asymmetric regulation of mobile termination rates using a theoretical model and its simulation. The result shows that when there is no noticeable difference in brand loyalty between mobile operators with the high degree of substitutability between services provided by mobile operators, and the costs of new entrants are low, a reduction in the asymmetry of mobile access prices results in an enhancement of consumer welfare. These findings provide positive evidence for the argument that in certain situations asymmetric pricing of mobile access services may be counterproductive for consumer welfare.

T Cell Receptor Signaling That Regulates the Development of Intrathymic Natural Regulatory T Cells

  • Song, Ki-Duk;Hwang, Su-Jin;Yun, Cheol-Heui
    • IMMUNE NETWORK
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    • v.11 no.6
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    • pp.336-341
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    • 2011
  • T cell receptor (TCR) signaling plays a critical role in T cell development, survival and differentiation. In the thymus, quantitative and/or qualitative differences in TCR signaling determine the fate of developing thymocytes and lead to positive and negative selection. Recently, it has been suggested that self-reactive T cells, escape from negative selection, should be suppressed in the periphery by regulatory T cells (Tregs) expressing Foxp3 transcription factor. Foxp3 is a master factor that is critical for not only development and survival but also suppressive activity of Treg. However, signals that determine Treg fate are not completely understood. The availability of mutant mice which harbor mutations in TCR signaling mediators will certainly allow to delineate signaling events that control intrathymic (natural) Treg (nTreg) development. Thus, we summarize the recent progress on the role of TCR signaling cascade components in nTreg development from the studies with murine model.

Regulatory T Cells in Tumor Microenvironment and Approach for Anticancer Immunotherapy

  • Jung-Ho Kim;Beom Seok Kim;Sang-Kyou Lee
    • IMMUNE NETWORK
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    • v.20 no.1
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    • pp.4.1-4.17
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    • 2020
  • Tregs have a role in immunological tolerance and immune homeostasis by suppressing immune reactions, and its therapeutic potential is critical in autoimmune diseases and cancers. There have been multiple studies conducted on Tregs because of their roles in immune suppression and therapeutic potential. In tumor immunity, Tregs can promote the development and progression of tumors by preventing effective anti-tumor immune responses in tumor-bearing hosts. High infiltration of Tregs into tumor tissue results in poor survival in various types of cancer patients. Identifying factors specifically expressed in Tregs that affect the maintenance of stability and function of Tregs is important for understanding cancer pathogenesis and identifying therapeutic targets. Thus, manipulation of Tregs is a promising anticancer strategy, but finding markers for Treg-specific depletion and controlling these cells require fine-tuning and further research. Here, we discuss the role of Tregs in cancer and the development of Treg-targeted therapies to promote cancer immunotherapy.

The Role of MicroRNAs in Regulatory T Cells and in the Immune Response

  • Ha, Tai-You
    • IMMUNE NETWORK
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    • v.11 no.1
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    • pp.11-41
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    • 2011
  • The discovery of microRNA (miRNA) is one of the major scientific breakthroughs in recent years and has revolutionized current cell biology and medical science. miRNAs are small (19~25nt) noncoding RNA molecules that post-transcriptionally regulate gene expression by targeting the 3' untranslated region (3'UTR) of specific messenger RNAs (mRNAs) for degradation of translation repression. Genetic ablation of the miRNA machinery, as well as loss or degradation of certain individual miRNAs, severely compromises immune development and response, and can lead to immune disorders. Several sophisticated regulatory mechanisms are used to maintain immune homeostasis. Regulatory T (Treg) cells are essential for maintaining peripheral tolerance, preventing autoimmune diseases and limiting chronic inflammatory diseases. Recent publications have provided compelling evidence that miRNAs are highly expressed in Treg cells, that the expression of Foxp3 is controlled by miRNAs and that a range of miRNAs are involved in the regulation of immunity. A large number of studies have reported links between alterations of miRNA homeostasis and pathological conditions such as cancer, cardiovascular disease and diabetes, as well as psychiatric and neurological diseases. Although it is still unclear how miRNA controls Treg cell development and function, recent studies certainly indicate that this topic will be the subject of further research. The specific circulating miRNA species may also be useful for the diagnosis, classification, prognosis of diseases and prediction of the therapeutic response. An explosive literature has focussed on the role of miRNA. In this review, I briefly summarize the current studies about the role of miRNAs in Treg cells and in the regulation of the innate and adaptive immune response. I also review the explosive current studies about clinical application of miRNA.

Interleukin-10-Producing B Cells Help Suppress Ovariectomy-Mediated Osteoporosis

  • Yuhua Wang;Wei Zhang;Seong-Min Lim;Li Xu;Jun-O Jin
    • IMMUNE NETWORK
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    • v.20 no.6
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    • pp.50.1-50.11
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    • 2020
  • Osteoporosis is prevalent in elderly women and it may cause dental implant failure. In particular, estrogen deficiency in postmenopausal women leads to higher rates of osteoporosis prevalence. Immune cell-mediated effects involving the development of osteoporosis have been studied previously; however, the role of IL-10-producing regulatory B (B10) cells in osteoporosis is largely unclear. Here, we examined the role of B10 cells in osteoporosis. C57BL/6 mice were subjected to ovariectomy (OVX). Fifteen weeks after OVX surgery, the first molar of the right maxillary was extracted, and twenty-four weeks after OVX surgery, serous progression of osteoporosis was observed in the alveolar bone. Moreover, the proportion of CD19+CD5+CD1dhigh regulatory B cells, B10, and CD4+CD25+FoxP3+ regulatory T cells from the spleen of OVX mice decreased during the progression of osteoporosis, compared to controls. In contrast to regulatory cells, IL-17-producing Th (Th17) cell levels were increased in OVX mice. Adoptive transfer of B10 cells to OVX mice led to a decrease in Th17 cell abundance and inhibited the development of osteoporosis in the alveolar bone from OVX mice. Thus, our results suggest that B10 cells may help suppress osteoporosis development.

The Effects of Social Environmental Issue on the Establishment of Internal & External Network and Sustainable Environmental Management Performance (사회적 환경이슈화가 기업의 내·외부 네트워크구축 및 지속가능 환경경영성과에 미치는 영향)

  • Park, Nam Hong;Kim, Dae Yong
    • Smart Media Journal
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    • v.9 no.2
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    • pp.78-85
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    • 2020
  • This study aims to clarify the impact of environmental issues on sustainable environmental management performance through the establishment of internal and external networks and environmental management activities. As a result of analyzing 163 final collected data of companies, social environmental issues did not have a significant effect on the internal sharing system, but they had a significant positive effect on both regulatory response and cooperation network establishment. In addition, the regulatory response to the environment has a significant effect on both the internal sharing system, cooperation network establishment, and environmental management activities. Lastly, environmental management activities have a significant impact on sustainable environmental management performance, indicating that environmental issues are leading to environmental management activities and performance by promoting sustainable growth of companies.

A Study on Economic Characteristics of Two-way Network Interconnection System (통신망 상호접속체계의 경제적 특성분석)

  • Kim, Pang-Ryong
    • Journal of Korea Technology Innovation Society
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    • v.7 no.1
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    • pp.111-129
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    • 2004
  • The issues on the interconnection of telecommunications network are recently prevailed in the IT industry. In this study, we classify the network interconnection system into two categories: two way-same price model and two way-different price model. The purpose of this paper is to analyze economic characteristics of optimal settlement system according to each model. One of the most important policy implications we derive through this study is that symmetry between enterprises is required for policy maker or regulatory agency to set an efficient settlement system under two way-same price model, but that symmetry is not necessarily required under two way-same price model.

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The Police Responsibility about Illegal Information on the Information Communication Network (정보통신망상의 불법정보에 대한 경찰책임)

  • Gu, Hyung-Keun;Joung, Soon-Hyoung
    • Journal of Digital Convergence
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    • v.11 no.9
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    • pp.87-94
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    • 2013
  • The existing legal regulations that indiscriminately distributed various illegal information on the information network are discussing focused on civil liability and criminal liability. however, at this paper that approached with problem of police responsibility as a target of the exert of police authority for blocking illegal information on the information network. based on this recognition, this paper propose the problem and reformation about the present Information Communication Networks law's 7 of Article 44, Section 2 that for prompt blocking illegal information on the information network, not about direct regulatory approach to a person in charge of act but about the information network service provider which is a person in charge of condition.

Regulatory Network Analysis of MicroRNAs and Genes in Neuroblastoma

  • Wang, Li;Che, Xiang-Jiu;Wang, Ning;Li, Jie;Zhu, Ming-Hui
    • Asian Pacific Journal of Cancer Prevention
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    • v.15 no.18
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    • pp.7645-7652
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    • 2014
  • Neuroblastoma (NB), the most common extracranial solid tumor, accounts for 10% of childhood cancer. To date, scientists have gained quite a lot of knowledge about microRNAs (miRNAs) and their genes in NB. Discovering inner regulation networks, however, still presents problems. Our study was focused on determining differentially-expressed miRNAs, their target genes and transcription factors (TFs) which exert profound influence on the pathogenesis of NB. Here we constructed three regulatory networks: differentially-expressed, related and global. We compared and analyzed the differences between the three networks to distinguish key pathways and significant nodes. Certain pathways demonstrated specific features. The differentially-expressed network consists of already identified differentially-expressed genes, miRNAs and their host genes. With this network, we can clearly see how pathways of differentially expressed genes, differentially expressed miRNAs and TFs affect on the progression of NB. MYCN, for example, which is a mutated gene of NB, is targeted by hsa-miR-29a and hsa-miR-34a, and regulates another eight differentially-expressed miRNAs that target genes VEGFA, BCL2, REL2 and so on. Further related genes and miRNAs were obtained to construct the related network and it was observed that a miRNA and its target gene exhibit special features. Hsa-miR-34a, for example, targets gene MYC, which regulates hsa-miR-34a in turn. This forms a self-adaption association. TFs like MYC and PTEN having six types of adjacent nodes and other classes of TFs investigated really can help to demonstrate that TFs affect pathways through expressions of significant miRNAs involved in the pathogenesis of NB. The present study providing comprehensive data partially reveals the mechanism of NB and should facilitate future studies to gain more significant and related data results for NB.