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Diversity of Paenibacillus spp. in the Rhizosphere of Four Sorghum(Sorghum bicolor) Cultivars Sown with Two Contrasting Levels of Nitrogen Fertilizer Assessed by rpoB-Based PCR-DGGE and Sequencing Analysis

  • Coelho, Marcia Reed Rodrigues;Mota, Fabio Faria Da;Carneiro, Newton Portilho;Marriel, Ivanildo Evodio;Paiva, Edilson;Rosado, Alexandre Soares;Seldin, Lucy
    • Journal of Microbiology and Biotechnology
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    • v.17 no.5
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    • pp.753-760
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    • 2007
  • The diversity of Paenibacillus species was assessed in the rhizospheres of four cultivars of sorghum sown in Cerrado soil amended with two levels of nitrogen fertilizer(12 and 120 kg/ha). Two cultivars(IS 5322-C and IS 6320) demanded the higher amount of nitrogen to grow, whereas the other two(FBS 8701-9 and IPA 1011) did not. Using the DNA extracted from the rhizospheres, a Paenibacillus-specific PCR system based on the RNA polymerase gene(rpoB) was chosen for the molecular analyses. The resulting PCR products were separated into community fingerprints by DGGE and the results showed a clear distinction between cultivars. In addition, clone libraries were generated from the rpoB fragments of two cultivars(IPA 1011 and IS 5322-C) using both fertilization conditions, and 318 selected clones were sequenced. Analyzed sequences were grouped into 14 Paenibacillus species. A greater diversity of Paenibacillus species was observed in cultivar IPA 1011 compared with cultivar IS 5322-C. Moreover, statistical analyses of the sequences showed that the bacterial diversity was more influenced by cultivar type than nitrogen fertilization, corroborating the DGGE results. Thus, the sorghum cultivar type was the overriding determinative factor that influenced the community structures of the Paenibacillus communities in the habitats investigated.

Purification and Characterization of an Extracellular $\beta$-Glucosidase from Monascus purpureus

  • Daroit, Daniel J.;Simonetti, Aline;Hertz, Plinho F.;Brandelli, Adriano
    • Journal of Microbiology and Biotechnology
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    • v.18 no.5
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    • pp.933-941
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    • 2008
  • An extracellular $\beta$-glucosidase produced by Monascus purpureus NRRL1992 in submerged cultivation was purified by acetone precipitation, gel filtration, and hydrophobic interaction chromatography, resulting in a purification factor of 92-fold. A $2^2$ central-composite design (CCD) was performed to find the best temperature and pH conditions for enzyme activity. Maximum activity was observed in a wide range of temperature and pH values, with optimal conditions set at $50^{\circ}C$ and pH 5.5. The $\beta$-glucosidase showed moderate thermostability, was inhibited by $HgCl_2$, $K_2Cr_O_4$, and $K_2Cr_2O_7$, whereas other reagents including $\beta$-mercaptoethanol, SDS, and EDTA showed no effect. Activity was slightly stimulated by low concentrations of ethanol and methanol. Hydrolysis of p-nitrophenyl-$\beta$-D-glucopyranoside (pNPG), cellobiose, salicin, n-octyl-$\beta$-D-glucopyranoside, and maltose indicates that the $\beta$-glucosidase has broad substrate specificity. Apparently, glucosyl residues were removed from the nonreducing end of p-nitrophenyl-$\beta$-D-cellobiose. $\beta$-Glucosidase affinity and hydrolytic efficiency were higher for pNPG, followed by maltose and cellobiose. Glucose and cellobiose competitively inhibited pNPG hydrolysis.

Assessment of flood hazard using 1D and 2D modeling in Rio Narcea, Spain (스페인 Rio Narcea 유역에서의 1D 및 2D 모델링을 이용한 홍수범람 평가)

  • Kim, Woo-Jin;Han, Hyeong-Jun;Choi, Gye-Woon
    • Proceedings of the Korea Water Resources Association Conference
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    • 2011.05a
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    • pp.431-431
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    • 2011
  • Rio Narcea 는 스페인 북부에 위치한 Astuias 지역을 흐르는 Nalon River 의 한 지류로서 총연장 102km 유역 면적 1,135 m이며. 사행천으로 홍수 시 범람하기 쉬운 곡류천의 특성상 잦은 홍수피해를 받고 있는 지역이다. 특히 2010년 6월에는 일주일 사이에 홍수 피해가 두 번씩이나 발생함에 따라 수많은 인명피해가 발생하였고 사회 SOC 시설이 큰 타격을 입는 등 상당한 피해를 야기하였다. 이에 1D 및 2D 수리 모델링 프로그램을 이용하여 사행천에 수리특성을 분석하고, 그에 따른 홍수범람도를 작성하여 1D와 2D 모델링을 비교분석하였고 이를 이용하여 홍수 피해 방지 대책을 마련하는데 도움이 되고자 한다. 1D 모델링은 HEC-GeoRAS 및 HEC-RAS를 이용하였으며, 2D 모델링에는 IBER를 이용하였다. Arc-GIS 툴을 이용한 HEC-GeoRAS 기능을 사용하여 강의 단면을 구성하고 HEC-RAS를 이용하여 1차원 모델링을 수행하였으며, 2D 모델링에는 스페인의 CIMNE에서 개발한 2차원 수리해석 프로그램인 IBER를 사용하였는데, 이 프로그램은 부정류 해석과 난류 해석, 유사이동 및 Dam-break 등의 해석이 가능하다. 1D 및 2D 모델링의 결과 값으로 얻어진 수심 및 유속을 토대로 1D는 Arc-GIS를 이용, 2D는 IBER 프로그램 내에 기능을 이용하여 바르셀로나에서 주로 사용되는 Catalan Water Agency 기준에 의한 홍수범람도를 작성하였다. 각각의 1D 와 2D 모델링으로 작성한 홍수범람도를 비교분석해 본 결과 거의 유사하게 표현됨을 알 수 있었으며, 두 모델링 기법 모두 홈수범람도를 표현함에 있어서 유용하게 사용될 수 있을 것이라 생각된다. 대상지역의 관련 자료의 유무에 따라 구분하여 1D 혹은 2D 모델링 기법을 선택 사용할 수 있으며. 유역의 홍수발생시 인명과 재산 피해에 대비한 홍수범람 지도 및 홍수재해지도 제작에 도움이 될 것으로 판단된다.

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Dynamic analysis of buildings considering the effect of masonry infills in the global structural stiffness

  • de Souza Bastos, Leonardo;Guerrero, Carolina Andrea Sanchez;Barile, Alan;da Silva, Jose Guilherme Santos
    • Coupled systems mechanics
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    • v.8 no.2
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    • pp.169-184
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    • 2019
  • This research work presents a study that aims to assess the dynamic structural behaviour and also investigate the human comfort levels of a reinforced concrete building, when subjected to nondeterministic wind dynamic loadings, considering the effect of masonry infills on the global stiffness of the structural model. In general, the masonry fills most of the empty areas within the structural frames of the buildings. Although these masonry infills present structural stiffness, the common practice of engineers is to adopt them as static loads, disregarding the effect of the masonry infills on the global stiffness of the structural system. This way, in this study a numerical model based on sixteen-storey reinforced concrete building with 48 m high and dimensions of $14.20m{\times}15m$ was analysed. This way, static, modal and dynamic analyses were carried out in order to simulate the structural model based on two different strategies: no masonry infills and masonry infills simulated by shell finite elements. In this investigation, the wind action is considered as a nondeterministic process with unstable properties and also random characteristics. The fluctuating parcel of the wind is decomposed into a finite number of harmonic functions proportional to the structure resonant frequency with phase angles randomly determined. The nondeterministic dynamic analysis clearly demonstrates the relevance of a more realistic numerical modelling of the masonry infills, due to the modifications on the global structural stiffness of the building. The maximum displacements and peak accelerations values were reduced when the effect of the masonry infills (structural stiffness) were considered in the dynamic analysis. Finally, it can be concluded that the human comfort evaluation of the sixteen-storey reinforced concrete building can be altered in a favourable way to design.

Comparative analysis of turbulence models in hydraulic jumps

  • Lobosco, Raquel J.;da Fonseca, David O.;Jannuzzia, Graziella M.F.;Costa, Necesio G.
    • Coupled systems mechanics
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    • v.8 no.4
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    • pp.339-350
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    • 2019
  • A numerical simulation of the incompressible multiphase hydraulic jump flow was performed to compare the interface prediction through the use of the three RANS turbulence models: $k-{\varepsilon}$, $RNGk-{\varepsilon}$ and SST $k-{\omega}$. A three dimensional no submerged hydraulic jump and a two dimensional submerged hydraulic jump were modeled. Both the geometry and the mesh were created using the open source Gmsh code. The project's geometry consists of a rectangular channel with length and height differences between the two dimensional and three dimensional simulations. Uniform hexahedral cells were used for the mesh. Three refining meshes were constructed to allow to verify simulation convergence. The Volume of Fluid (abbr. VOF) method was used for treatment of the air-water surface. The turbulence models were evaluated in three distinct set up configurations to provide a greater accuracy in the flow representation. In the two-dimensional analysis of a submerged hydraulic jump simulation, the turbulence model RNG RNG $k-{\varepsilon}$ provided a better interface adjust with the experimental results than the model $k-{\varepsilon}$ and SST $k-{\omega}$. In the three-dimensional simulation of a no-submerged hydraulic jump the k-# showed better results than the SST $k-{\omega}$ and RNG $k-{\varepsilon}$ capturing the height and length of the ledge with a better fit with the experimental results.

Valorization of bottom ash with geopolymer synthesis: Optimization of pastes and mortar

  • Froener, Muriel S.;Longhi, Marlon A.;de Souza, Fabiana;Rodriguez, Erich D.;Kirchheim, Ana Paula
    • Advances in concrete construction
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    • v.14 no.1
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    • pp.1-13
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    • 2022
  • Due to the physical-chemical characteristics of some bottom ash (BA), there are technical, economic and environmental limitations to find a destination that will add value to it. In Brazil, this residue is eventually used for filling coal extraction pits or remains in sedimentation ponds, creating a susceptible panorama to environmental issues. The geopolymers binders are one of the alternatives to the proper use high amounts of these materials. In this work, geopolymeric binder pastes were produced with BA mixed to activators with different alkali contents (expressed as %Na2O), as well as the incorporation of soluble silicates (Ms content). The production of binary geopolymeric pastes based on the use of two industrial wastes: fluid catalytic cracking (FCC) and aluminum anodizing sludge (AAS), was also assessed. The content in mass of BA/FCC and BA/AAS ranged from 100/0, 90/10; 80/20 and 70/30. Systems with soluble silicates as activator in a molar ratio SiO2/Na2O of 1.0 (Ms = 1.0) and Na2O content of 15%, showed the best results of mechanical strength (42 MPa at day 28th). The improvement is up to 5X when compared to NaOH based systems. For systems with partial replacement of BA of 10% of AAS and 20% of FCC (80/20), the presence of soluble silicates was also effective to increase compressive strength.

Clinical predictors of potentially impacted canines in low-risk patients: A retrospective study in mixed dentition

  • Sergio Estelita Barros;Bianca Heck;Kelly Chiqueto;Eduardo Ferreira
    • The korean journal of orthodontics
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    • v.53 no.2
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    • pp.106-115
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    • 2023
  • Objective: To evaluate the null hypothesis that there is no difference in a set of clinical predictors of potentially impacted canines between low-risk patients with and without displaced canines. Methods: The normal canine position group consisted of 30 patients with 60 normally erupting canines ranked in sector I (age, 9.30 ± 0.94 years). The displaced canine group comprised 30 patients with 41 potentially impacted canines ranked in sectors II to IV (age, 9.46 ± 0.78 years). Maxillary lateral incisor crown angulation, inclination, rotation, width, height, and shape, as well as palatal depth, arch length, width, and perimeter composed a set of clinical predictors, which were evaluated on digital dental casts. Statistical analyses consisted of group comparisons and variable correlations (p < 0.05). Results: There was a significant association between sex and mesially displaced canines. Unilateral canine displacement was more prevalent than bilateral displacement. The crown of the maxillary lateral incisors was significantly angulated more mesially and rotated mesiolabially in low-risk patients with displaced canines, who also had a shallower palate and shorter anterior dental arch length. Lateral incisor crown angulation and rotation, as well as palatal depth and arch length, were significantly correlated with the canine displacement severity. Conclusions: The null hypothesis was rejected. Maxillary lateral incisor angulation inconsistent with the "ugly duckling" stage as well as a shallow palate and short arch length are clinical predictors that can significantly contribute to the early screening of ectopic canines in low-risk patients.

Spectrophotometric evaluation of restorative composite shades and their match with a classical shade guide

  • Rafael Melara;Luciana Mendonca;Fabio Herrmann Coelho-de-Souza;Juliana Nunes Rolla;Luciano de Souza Goncalves
    • Restorative Dentistry and Endodontics
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    • v.46 no.4
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    • pp.60.1-60.8
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    • 2021
  • Objectives: The aim of this study was to verify the match between 5 shades of composites from different manufacturers with a shade guide and among the systems using a portable spectrophotometer. Materials and Methods: Shade measurements were performed on specimens of Z350 XT (3M ESPE), Charisma Diamond (Heraeus Kulzer GmbH), Esthet X-HD (Dentsply Caulk), and Empress Direct (Ivoclar-Vivadent) for shades A1, A2, A3, B1, and C3 using a Vita Easyshade spectrophotometer (Vita Zahnfabrik) against a white background. Corresponding shades of Vitapan Classical (Vita Zahnfabrik) guide were measured likewise and shade variation (ΔE) was calculated based on International Commission on Illumination L*a*b* parameters. The ΔE of the composites in each shade was compared by one-way analysis of variance and Tukey's post hoc test (α = 0.05). Results: All composites presented ΔE > 3.7 compared with the shade guide. Variation in shades A3, B1, and C3 was significantly different for all composites. ΔE of Z350 XT was significantly lower for A1 than for the other shades, whereas ΔE of Z350 XT and Charisma Diamond were significantly lower for A2 than for the other shades. Conclusions: No composite shade matched with the shade guide. Equivalent shades of the restorative composite from different manufacturers may show clinically noticeable ΔE.

Efficacy of reciprocating instruments and final irrigant activation protocols on retreatment of mesiobuccal roots of maxillary molars: a micro-CT analysis

  • Lilian Tietz;Renan Diego Furlan;Ricardo Abreu da Rosa;Marco Antonio Hungaro Duarte;Murilo Priori Alcalde;Rodrigo Ricci Vivan;Theodoro Weissheimer;Marcus Vinicius Reis So
    • Restorative Dentistry and Endodontics
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    • v.47 no.1
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    • pp.13.1-13.13
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    • 2022
  • Objectives: This study evaluated the efficacy of 3 reciprocating systems and the effects of 2 instruments for irrigant activation on filling material removal. Materials and Methods: Forty mesiobuccal roots of maxillary molars were prepared up to size 25.06 and obturated. Micro-computed tomography (micro-CT) examination #1 was performed. Teeth were then divided into 4 groups (n = 10), according to the retreatment protocol: (1) manual, (2) Reciproc Blue, (3) WaveOne Gold, and (4) X1 Blue. Micro-CT examinations #2 and #3 were performed after filling removal and repreparation, respectively. Next, all teeth were divided into 2 new groups (n = 20) according to the irrigant activation protocol: XP Clean (XP Clean size 25.02) and Flatsonic (Flatsonic ultrasonic tip). Micro-CT examination #4 was performed after irrigant activation. Statistical analysis was performed with a significance level set at 5%. Results: WaveOne Gold removed a significantly greater amount of filling material than the manual group (p < 0.05). The time to reach the WL was similar for all reciprocating systems (p > 0.05). X1 Blue was faster than the manual group (p < 0.05). Only manual group improved the filling material removal after the repreparation stage (p < 0.05). Both activation protocols significantly improved the filling material removal (p < 0.05), without differences between them (p > 0.05). Conclusions: None of the tested instruments completely removed the filling material. X1 Blue size 25.06 reached the working length in the shortest time. XP Clean and Flatsonic improved the filling material removal.

Accuracy and time efficiency of conventional and digital outlining of extensions of denture foundation on preliminary casts

  • Anne Kaline Claudino Ribeiro;Aretha Heitor Verissimo;Rodrigo Falcao Carvalho Porto de Freitas;Rayanna Thayse Florencio Costa;Burak Yilmaz;Sandra Lucia Dantas de Moraes;Adriana da Fonte Porto Carreiro
    • The Journal of Advanced Prosthodontics
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    • v.16 no.3
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    • pp.139-150
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    • 2024
  • PURPOSE. The purpose of this diagnostic study was to assess the accuracy and time efficiency of a digital method to draw the denture foundation extension outline on preliminary casts compared with the conventional technique. MATERIALS AND METHODS. A total of 28 preliminary edentulous casts with no anatomical landmarks were digitized using a laboratory scanner. The outlining of the entire basal seat of the denture was performed on preliminary casts and digitized. Casts with no extension outline were digitized and outlines were drawn using software (DWOS, Straumann). The accuracy of the extension outlined between both techniques was evaluated in the software (GOM Inspect; GOM GmbH) by file superimposition. Specificity and sensitivity tests were applied to measure accuracy. The paired t-test (95% CI) was used to compare the mean total area and the working time. RESULTS. The accuracy ranged from 0.57 to 0.92. The buccal and labial frenulum showed a lower value in the maxilla (0.57); while the area between the retromolar pad and buccal frenulum (0.64) showed a lower score in the mandible. The maxillary denture foundation and the working time for both arches were significantly longer for the digital method (P < .001). CONCLUSION. The denture foundation extension outline exhibited a sufficiently excellent accuracy for the digital method, except for the maxillary anterior region. However, the digital method required a longer working time.