Coelho, Marcia Reed Rodrigues
(Instituto de Microbiologia Prof. Paulo de Goes, Universidade Federal do Rio de Janeiro)
Mota, Fabio Faria Da (Instituto de Microbiologia Prof. Paulo de Goes, Universidade Federal do Rio de Janeiro) Carneiro, Newton Portilho (EMBRAPA/CNPMS-Empresa Brasileira de Pesquisa Agropecuaria, Centro Nacional de Pesquisas de Milho e Sorgo) Marriel, Ivanildo Evodio (EMBRAPA/CNPMS-Empresa Brasileira de Pesquisa Agropecuaria, Centro Nacional de Pesquisas de Milho e Sorgo) Paiva, Edilson (EMBRAPA/CNPMS-Empresa Brasileira de Pesquisa Agropecuaria, Centro Nacional de Pesquisas de Milho e Sorgo) Rosado, Alexandre Soares (Instituto de Microbiologia Prof. Paulo de Goes, Universidade Federal do Rio de Janeiro) Seldin, Lucy (Instituto de Microbiologia Prof. Paulo de Goes, Universidade Federal do Rio de Janeiro) |
1 | Berge, O., T. Heulin, W. Achouak, C. Richard, R. Bally, and J. Balandreau. 1991. Rahnella aquatilis, a nitrogen-fixing enteric bacterium associated with the rhizosphere of wheat and maize. Can. J. Microbiol. 37: 195-203 DOI |
2 | Berge, O., M. H. Guinebretiere, W. Achouak, P. Normand, and T. Heulin. 2002. Paenibacillus graminis sp. nov. and Paenibacillus odorifer sp. nov., isolated from plant roots, soil and food. Int. J. Syst. Evol. Microbiol. 52: 607-616 DOI |
3 | Coelho, M. R. R., I. von der Weid, V. Zahner, and L. Seldin. 2003. Characterization of nitrogen-fixing Paenibacillus species by polymerase chain reaction-restriction fragment length polymorphism analysis of part of genes encoding 16S rRNA and 23S rRNA and by multilocus enzyme electrophoresis. FEMS Microbiol. Lett. 222: 243-250 DOI ScienceOn |
4 | Drancourt, M. and D. Raoult. 2002. rpoB gene sequencebased identification of Staphylococcus species. J. Clin. Microbiol. 40: 1333-1338 DOI ScienceOn |
5 | Gomes, N. C. M., H. Heuer, J. Schonfield, R. Costa, L. Mendonca-Hagler, and K. Smalla. 2001. Bacterial diversity of the rhizosphere of maize (Zea mays) grown in tropical soil studied by temperature gradient gel electrophoresis. Plant Soil 232: 167-180 DOI |
6 | Margelef, D. R. 1958. Information theory in ecology. Gen. Syst. 3: 36-71 |
7 | Paffetti, D., C. Scotti, S. Gnocchi, S. Francelli, and M. Bazzicalupo. 1996. Genetic diversity of an Italian Rhizobium meliloti population from different Medicago sativa varieties. Appl. Environ. Microbiol. 62: 2279-2285 |
8 | Pielou, E. C. 1969. Association tests versus homogeneity tests: Their use in subdividing quadrats into groups. Vegetation 18: 4-18 DOI |
9 | Rodriguez-Diaz, M., L. Lebbe, B. Rodelas, J. Heyrman, P. De Vos, and N. A. Logan. 2005. Paenibacillus wynnii sp. nov., a novel species harbouring the nifH gene, isolated from Alexander Island, Antarctica. Int. J. Syst. Evol. Microbiol. 55: 2093-2099 DOI ScienceOn |
10 | Renouf V., O. Claisse, C. Miot-Sertier, and A. Lonvaud-Funel. 2006. Lactic acid bacteria evolution during winemaking: Use of rpoB gene as a target for PCR-DGGE analysis. Food Microbiol. 23: 136-145 DOI ScienceOn |
11 | Grayston, S. J., G. S. Griffith, J. L. Mawdsley, C. D. Campbell, and R. D. Bardgett. 2001. Accounting for variability in soil microbial communities of temperate upland grassland ecosystem. Soil Biol. Biochem. 33: 533-551 DOI ScienceOn |
12 | Mota, F. F., E. A. Gomes, E. Paiva, and L. Seldin. 2005. Assessment of the diversity of Paenibacillus species by a novel rpoB-based PCR-DGGE method. FEMS Microbiol. Ecol. 52: 317-328 |
13 | Seldin, L., A. S. Rosado, D. W. Cruz, A. Nobrega, J. D. Van Elsas, and E. Paiva. 1998. Comparison of Paenibacillus azotofixans strains isolated from rhizoplane, rhizosphere and non-root-associated soil from maize planted in two different Brazilian soils. Appl. Environ. Microbiol. 64: 3860-3868 |
14 | Lynch, J. M. 1990. Beneficial interactions between microorganisms and roots. Biotechnol. Adv. 8: 335-346 DOI ScienceOn |
15 | Di Cello, F., A. Bevivino, L. Chiarini, R. Fani, D. Paffetti, S. Tabacchioni, and C. Dalmastri. 1997. Biodiversity of a Burkholderia cepacia population isolated from the maize rhizosphere at different plant growth stages. Appl. Environ. Microbiol. 63: 4485-4493 |
16 | Walker, R., A. A. Powell, and B. Seddon. 1998. Bacillus isolates from the spermosphere of peas and dwarf French beans with antifungal activity against Botrytis cinerea and Pythium species. J. Appl. Microbiol. 84: 791-801 DOI ScienceOn |
17 | Griffiths, B. S., K. Ritz, N. Ebblewhite, and G. Dobson. 1999. Soil microbial community structure: Effects of substrate loading rates. Soil Biol. Biochem. 31: 145-153 DOI ScienceOn |
18 | Mota, F. F., A. Nobrega, I. E. Marriel, E. Paiva, and L. Seldin. 2002. Diversity of Paenibacillus polymyxa strains isolated from the rhizosphere of four maize genotypes plants in Cerrado soil. Appl. Soil Ecol. 20: 119-132 DOI ScienceOn |
19 | Mota, F. F., E. A. Gomes, E. Paiva, A. S. Rosado, and L. Seldin. 2004. Use of rpoB gene analysis for identification of nitrogen-fixing Paenibacillus species as an alternative to the 16S rRNA gene. Lett. Appl. Microbiol. 39: 34-40 DOI ScienceOn |
20 | Yang, C. H. and D. E. Crowley. 2000. Rhizosphere microbial community structure in relation to root location and plant iron nutritional status. Appl. Environ. Microbiol. 66: 345- 351 DOI ScienceOn |
21 | Cheong, H., S.-Y. Park, C.-M. Ryu, J. F. Kim, S.-H. Park, and C. S. Park. 2005. Diversity of root-associated Paenibacillus spp. in winter crops from the southern part of Korea. J. Microbiol. Biotechnol. 15: 1286-1298 과학기술학회마을 |
22 | Peixoto, R. S., H. L. da Costa Coutinho, N. G. Rumjanek, A. Macrae, and A. S. Rosado. 2002. Use of rpoB and 16S rRNA genes to analyse bacterial diversity of a tropical soil using PCR and DGGE. Lett. Appl. Microbiol. 35: 316-320 DOI ScienceOn |
23 | Sakiyama, C. C. H., E. M. Paula, P. C. Pereira, A. C. Borges, and D. O. Silva. 2001. Characterization of pectin lyase produced by an endophytic strain isolated from coffee cherries. Lett. Appl. Microbiol. 33: 117-121 DOI ScienceOn |
24 | Burgmann, H., S. Meier, M. Bunge, F. Widmer, and J. Zeyer. 2005. Effects of model root exudates on structure and activity of a soil diazotroph community. Environ. Microbiol. 11: 1711-1724 |
25 | Cocking, E. C. 2003. Endophytic colonization of plant roots by nitrogen-fixing bacteria. Plant Soil 252: 169-175 DOI |
26 | Kanungo, P. K., B. Kamakrishnan, and V. R. Rao. 1997. Placement effects of organic sources on nitrogenase activity and nitrogen-fixing bacteria in flooded rice soils. Biol. Fert. Soils 25: 103-108 DOI ScienceOn |
27 | Renesto, P., J. Gouvernet, M. Drancourt, V. Roux, and D. Raoult. 2001. Use of rpoB gene analysis for detection and identification of Bartonella species. J. Clin. Microbiol. 39: 430-437 DOI ScienceOn |
28 | Sambrook, J., E. F. Fritsch, and T. Maniatis. 1989. Molecular Cloning: A Laboratory Manual, 2nd Ed. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York |
29 | Cocolin, L. and G. Comi. 2005. Use of a culture-independent molecular method to study the ecology of Yersinia spp. in food. Int. J. Food Microbiol. 105: 71-82 DOI ScienceOn |
30 | Bent E., S. Tuzun, C. P. Chanway, and S. Enebak. 2001. Alterations in plant growth and in root hormone levels of lodgepole pines inoculated with rhizobacteria. Can. J. Microbiol. 47: 793-800 DOI ScienceOn |
31 | Chelius M. K. and E. W. Triplett. 2001. The diversity of Archaea and Bacteria in association with the roots of Zea mays L. Microbial Ecol. 41: 252-263 DOI |
32 | Muyzer, G., A. Felske, C. O. Wirsen, and H. W. Jannasch. 1995. Phylogenetic relationship of Thiomicrospira species and their identification in deep-sea hydrothermal vent samples by denaturing gradient gel electrophoresis of 16S rDNA fragments. Arch. Microbiol. 164: 165-172 DOI ScienceOn |
33 | Glick, B. R. 1995. The enhancement of plant growth by freeliving bacteria. Can. J. Microbiol. 41: 109-117 DOI ScienceOn |
34 | Lovell, C. R., M. J. Friez, J. W. Longshore, and C. E. Bagwell. 2001. Recovery and phylogenetic analysis of nifH from diazotrophic bacteria associated with dead aboveground biomass of Spartina alterniflora. Appl. Environ. Microbiol. 67: 5308-5314 DOI ScienceOn |
35 | Nubel, U., B. Engelen, A. Felske, J. Snaidr, A.Wieshuber, R. I. Amann, W. Ludwig, and H. Backhaus. 1996. Sequence heterogeneities of genes encoding 16S rDNAs in Paenibacillus polymyxa detected by temperature gradient gel electrophoresis. J. Bacteriol. 178: 5636-5643 DOI |
36 | Garcia de Salamone, I., J. Dobereiner, S. Urquiaga, and R. M. Boddey. 1996. Biological nitrogen fixation in Azospirillum strain-maize genotype association as evaluated by isotope dilution technique. Biol. Fertil. Soils 23: 249-256 DOI ScienceOn |
37 | Mavingui, P. and T. Heulin. 1994. In vitro chitinase antifungal activity of a soil, rhizosphere and rhizoplane populations of Bacillus polymyxa. Soil Biol. Biochem. 26: 801-803 DOI ScienceOn |
38 | Jung, W.-J., J.-H. Kuk, K.-Y. Kim, T.-H. Kim, and R.-D. Park. 2005. Purification and characterization of chitinase from Paenibacillus illinoisensis KJA-424. J. Microbiol. Biotechnol. 15: 274-280 과학기술학회마을 |
39 | Mollet, C., M. Drancourt, and D. Raoult. 1997. rpoB Sequence analysis as a novel basis for bacterial identification. Mol. Microbiol. 26: 1005-1011 DOI ScienceOn |
40 | Silva, K. R. A., J. F. Salles, L. Seldin, and J. D. Van Elsas. 2003. Application of a novel Paenibacillus-specific PCRDGGE method and sequence analysis to assess the diversity of Paenibacillus spp. in the maize rhizosphere. J. Microbiol. Methods 54: 213-231 DOI ScienceOn |
41 | Felske A., A. Wolterink, R. V. Lis, and A. D. L. Akkermans. 1998. Phylogeny of the main bacterial 16S rRNA sequences in DRENTSE A grasslands soils (The Netherlands). Appl. Environ. Microbiol. 64: 871-879 |
42 | Giller, K. E. 2001. Nitrogen Fixation in Tropical Cropping System, 2nd Ed. CAB International, Wallingford, Oxon, United Kingdom |
43 | Dahllof, I., H. Baillie, and S. Kjelleberg. 2000. rpoB-based microbial community analysis avoids limitations inherent in 16S rRNA gene intraspecies heterogeneity. Appl. Environ. Microbiol. 66: 3376-3380 DOI ScienceOn |
44 | Ryu, C.-M., J. W. Kim, O. Choi, S.-Y. Park, S.-H. Park, and C.-S. Park. 2005. Nature of a root-associated Paenibacillus polymyxa from field-grown winter barley in Korea. J. Microbiol. Biotechnol. 15: 984-991 과학기술학회마을 |
45 | Carelli, M., S. Gnocchi, S. Francelli, A. Mengoni, D. Paffetti, C. Scotti, and M. Bazzicalupo. 2000. Genetic diversity and dynamics of Sinorhizobium meliloti populations nodulating different alfafa cultivars in Italian soils. Appl. Environ. Microbiol. 66: 4785-4789 DOI ScienceOn |