• 한국자원식물학회지
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• 제16권1호
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• pp.55-60
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• 2003

암$.$수 개체 사이에 상이한 성염색체 조성을 지니는 자웅 이주 식물인 수영 (Rumex acetsa L.)에서 120개 의 10-mer random primer를 이용하여 RAPD 분석을 수행하였다. 적용한 primer들 중 24개의 primer 에서 34개의 암$.$수 특이 밴드가 관찰되었다 암 개체 특이 밴드는 16개였으며, 수 개체 특이 밴드는 18개로 나타났다. 특히 OPC-10 primer로부터 얻은 1,440 bp인 DNA 단편은 수 개체 특이적으로 나타났다. 본 연구에서 얻어진 성 특이적인 RAPD 마커들은 식물에서 성 결정 메커니즘 구명의 기본 자료로 활용될 수 있을 것이다.

• 한국자원식물학회지
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• 제21권1호
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• pp.66-72
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• 2008

고마리의 24개 지역집단으로부터 PCR을 통한 RAPD 분석을 실시하였다. PCR을 통해 증폭된 RAPD절편들은 200-1, 900bp 사이의 구간에서 관찰되었다. 총 16개의 oligoprimer를 이용한 효소중합반응에서 184개의 유효한 polymorphic band markers를 확인하였다. RAPD 분석결과를 기초로 UPGMA 방법에 의한 유집분석을 수행한 결과, 고마리 개체군은 교란형 하천(도시하천, 농촌하천)과 자연적 수환경으로 유집되었고, 교란형 하천 보다 자연적 수환경의 고마리 개체군끼리 유전적 유연관계가 높은 것으로 나타났다. 또한 자연적 수환경과 교란형 하천에 생육하는 고마리 개체군간에 뚜렷한 유전적 한계를 나타내어 이들 사이의 유전적 이질성이 있는 것으로 생각된다.

• Journal of Forest and Environmental Science
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• 제35권2호
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• pp.90-101
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• 2019

Biodiversity refers to the total number and variation among species of flora and fauna of an area. Due to tremendous biotic especially anthropogenic pressure these natural resources are being vanishing. In present study genetic diversity among accessions of Thamnocalamus spathiflorus was evaluated. A total of 51 vegetative characters and 42 primers (10-mer) were screened. Out of 42 screened primers, 28 polymorphic primers were selected for further analysis. A total of 263 bands were recorded as polymorphic whereas 48 bands were monomorphic. The resolving power (Rp) of 28 Randomly Amplified Polymorphic DNA (RAPD) primers ranged from 4.6 (OPE08) to 17.6 (OPA11). The polymorphic information content (PIC) value ranged from 0.21 (OPAH09) to 0.44 (OPG02). The result revealed high degree of genetic relatedness (56 to 80%). Cluster analysis revealed two major clusters both for morphology as well as RAPD. Unlike morphological characterization, the accession (D5) from Bahli, Rampur, Shimla (H.P.) was clustered separately from the others in RAPD cluster analysis. Accessions with closed locality grouped together through RAPD marker system however analogy was recorded for morphological traits. The study conducted reflects the utility of RAPD technique for species identification and phylogenetic studies in bamboo for conducting bamboo breeding program.

• 한국작물학회지
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• 제48권4호
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• pp.297-302
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• 2003

Genetic linkage maps serve the plant geneticist in a number of ways, from marker assisted selection in plant improvement to map-based cloning in molecular genetic research. Genetic map based upon DNA polymorphism is a powerful tool for the study of qualitative and quantitative traits in crops. The objective of this study was to develop genetic linkage map of soybean using the population derived from the cross of Korean soybean cultivar 'Kwangkyo, and wild accession 'IT182305'. Total 1,000 Operon random primers for RAPD marker, 49 combinations of primer for AFLP marker, and 100 Satt primers for SSR marker were used to screen parental polymorphism. Total 341 markers (242 RAPD, 83 AFLP, and 16 SSR markers) was segregated in 85 $\textrm{F}_2$ population. Forty two markers that shown significantly distorted segregation ratio (1:2:1 for codominant or 3:1 for domimant marker) were not used in mapping procedure. A linkage map was constructed by applying the computer program MAPMAKER/EXP 3.0 to the 299 marker data with LOD 4.0 and maximum distance 50 cM. 176 markers were found to be genetically linked and formed 25 linkage groups. Linkage map spanned 2,292.7 cM across all 25 linkage groups. The average linkage distance between pair of markers among all linkage groups was 13.0 cM. The number of markers per linkage group ranged from 2 to 55. The longest linkage group 3 spanned 967.4 cM with 55 makers. This map requires further saturation with more markers and agronomically important traits will be joined over it.

• 식물분류학회지
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• 제32권4호
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• pp.383-396
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• 2002

한국산 붓꽃속(Iris L.; Iridaceae) 15종과 비교군인 등심붓꽃속(Sisyrinchium auguistifolium Mill.)과 범부채속(Belamcanda chinensis (L). DC.)을 포함한 17분류군을 대상으로 RAPD분석이 수행되었다. 10개의 oligoprimer를 이용한 효소중합반응에서 80개의 유효한 polymorphic band가 확인되었다. 유전적 상사도 지수에 의하여 bootstrap을 포함한 neighbour-joining 방법을 통하여 계통수를 평가하였다. 한국산 붓꽃속은 3아속(Limniris, Crossiris, Pardanthopsis) 또는 2속과 1아속으로 분류되어지고, 붓꽃아속(Limniris)은 6개의 분계조를 형성하고 있어 Waddick(1992)이 설정한 2절, 6계열의 분류체계가 더 타당하다고 생각된다. Chinensis계열은 금붓꽃계열과 각시붓꽃계열로 구분되어진다. Tripetalae계열에 속하는 부채붓꽃은 Sibiricae계열(시베리아붓꽃, 붓꽃)과 매우 가까운 유연관계를 형성하고 있으며, Ensatae계열에 속하는 타래붓꽃은 Ruthenicae계열에 속하는 솔붓꽃, 난장이붓꽃과 가까운 유연관계를 나타내고 있다. RAPD 분석자료를 기초로 한 한국산 붓꽃속의 계통학적 연구는 형태학적, ITS 염기서열 결과와 비슷한 결과를 제시하였고, 많은 학자들에 의해 논란이 된 분류군들의 문제를 해결하는데 유용한 접근방법이라 생각되며, 전체 붓꽃속 수준에서의 계통분석에 유용한 도구로 이용될 수 있는 것으로 사료된다.

• 한국응용곤충학회지
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• 제47권1호
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• pp.37-44
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• 2008

복숭아순나방(Grapholita molesta)은 사과에 주요 해충이다. 이 해충을 환경친화형 방법으로 방제하기 위해 성페로몬을 이용한 교미교란제 처리 기술이 개발되고 있다. 광범위한 영역에 대한 교미교란제의 처리는 복숭아순나방 방제에 효과적이나 이러한 광범위영역에 대한 구체적 크기를 결정하는 방법은 알려지지 않았다. 이를 결정하기 위해서는 복숭아순나방의 교미행동 범위를 결정할 수 있는 방법이 개발되어야 하며, 이를 위해 복숭아순나방의 이동을 추적할 수 있는 분자지표의 개발이 필요하게 되었다. 본 연구는 RAPD (random amplified polymorphic DNA) 기술을 이용하여 효과적인 두 개의 분자지표를 개발하였다. 상이한 지역과 시기에 따라 구분되는 야외 복숭아순나방 집단들에 대해서 이들 분자지표를 이용하여 집단 유전 분석이 실시되었다 이들 분자지표들은 특정지역에서 복숭아순나방 집단들이 시기적으로 유전적 조성에 뚜렷한 차이를 보여 주었다. 또한 서로 다른 지역의 복숭아순나방 집단들은 거리에 따라 상대적으로 차이가 증가하였지만, 계절이 진행함에 따라 그 차이가 감소하였다.

• 한국약용작물학회지
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• 제21권6호
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• pp.444-454
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• 2013

The development of random amplified polymorphic DNA (RAPD) and expressed sequence tag-derived simple sequence repeats (EST-SSRs) provided a useful tool for investigating Korean ginseng genetic diversity. In this study, 18 polymorphic markers (7 RAPD and 11 EST-SSR) selected to assess the genetic diversity in 31 ginseng accessions (11 Korean ginseng cultivars and 20 breeding lines). In RAPD analysis, a total of 53 unique polymorphic bands were obtained from ginseng accessions and number of amplicons ranged from 4 to 11 with a mean of 7.5 bands. Pair-wise genetic similarity coefficient (Nei) among all pairs of ginseng accessions varied from 0.01 to 0.32, with a mean of 0.11. On the basis of the resulting data, the 31 ginseng accessions were grouped into six clusters. As a result of EST-SSR analysis, 11 EST-SSR markers detected polymorphisms among the 31 ginseng accessions and revealed 49 alleles with a mean of 4.45 alleles per primer. The polymorphism information content (PIC) value ranged from 0.06 to 0.31, with an average of 0.198. The 31 ginseng accessions were classified into five groups by cluster analysis based on Nei's genetic distances. Consequently, the results of ginseng-specific RAPD and EST-SSR markers may prove useful for the evaluation of genetic diversity and discrimination of Korean ginseng cultivars and breeding lines.

• International Journal of Industrial Entomology and Biomaterials
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• 제30권1호
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• pp.6-16
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• 2015

This study established the genetic characterisation of 10 microsporidian isolates infecting non-mulberry silkworms (Antheraea assamensis and Samia cynthia ricini) collected from biogeographical forest locations in the State of Assam, India, using PCR-based markers assays: inter simple sequence repeat (ISSR) and random amplified polymorphic DNA (RAPD). A Nosema type species (NIK-1s_mys) was used as control for comparison. The shape of mature microsporidian spores were observed oval to elongated, measuring 3.80 to $4.90{\mu}m$ in length and 2.60 to $3.05{\mu}m$ in width. Fourteen ISSR primers generated reproducible profiles and yielded 178 fragments, of which 175 were polymorphic (98%), while 16 RAPD primers generated reproducible profiles with 198 amplified fragments displaying 95% of polymorphism. Estimation of genetic distance coefficients based on dice coefficients method and clustering with un-weighted pair group method using arithmetic average (UPGMA) analysis was done to unravel the genetic diversity of microsporidians infecting Indian muga and eri silkworm. The similarity coefficients varied from 0.385 to 0.941 in ISSR and 0.083 to 0.938 in RAPD data. UPGMA analysis generated dendrograms with two microsporidian groups, which appear to be different from each other. Based on Euclidean distance matrix method, 2-dimensional distribution also revealed considerable variability among different identified microsporidians. Clustering of these microsporidian isolates was in accordance with their host and biogeographic origin. Both techniques represent a useful and efficient tool for taxonomical grouping as well as for phylogenetic classification of different microsporidians in general and genotyping of these pathogens in particular.

• Advances in Traditional Medicine
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• 제7권1호
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• pp.26-33
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• 2007

Genetic polymorphism and molecular authentication were investigated with the commercial medicinal herb, Peony (Paeonia spp.), using random amplified polymorphic DNA (RAPD) markers. To identify the polymorphism of the RAPD patterns among plant origins, 20 different random primers were applied to the genomic DNA extracted from Paeonia spp. plants such as Paeonia (P.) lactiflora, P. officinale and P. japonica. Ten primers out of 20 primers could be used to discriminate the plant species in the same genus and 72 out of 81 scored DNA fragments (88.9%) generated with these primers were polymorphic. Especially, four primers, such as OPA1, OPA3, OP9, and OPA13, were useful to discriminate the plant origins among the species of Peony. In the results of cluster analysis using RAPD data obtained from the 10 primers, Peony (Paeonia spp.) plants used in this study were grouped into the two distinctive clusters, genetically. Herb medicine, especially P. lactiflora, were easily identified, when species-specific primers were applied to the investigation for discriminating herb medicine currently traded in domestic herb market, Kyungdongmart. Consequently, RAPD analysis was useful method to discriminate plant origins and the commercial medicinal herbs, Paeonia spp..

• 한국작물학회지
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• 제49권5호
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• pp.419-422
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• 2004

Soybean is a major source of protein meal in the world. Kunitz trypsin inhibitor (KTI) protein is responsible for the inferior nutritional quality of unheated or incompletely heated soybean meal. The objective of this research was to identify RAPD markers linked to KTI protein allele using bulked segregant analysis. Cultivar Jinpumkong2 (TiTi) was crossed with C242 (titi, absence of KTI protein) and F. seeds were planted. The $F_1$. plants were grown in the greenhouse to produce $F_2$ seeds. Each $F_2$ seed from $F_1$. plants was analysed electrophoretically to determine the presence of the KTI protein band. The present and absent bulks contained twenty individuals each, which were selected on the basis of the KTI protein electrophoresis, respectively. Total 94 $F_2$ individuals were constructed and 1,000 Operon random primers were used to identify RAPD primers linked to the Ti locus. The presence of KTI protein is dominant to the lack of a KTI protein and Kunitz trypsin inhibit protein band is controlled by a single locus. Four RAPD primers (OPAC12, OPAR15, OPO12, and OPC08) were linked to the Ti locus. RAPD primer OPO12 was linked to Ti locus, controlling kunitz trypsin inhibitor protein at a distance of 16.0 cM. This results may assist in study of developing fine map including Ti locus in soybean.