• 제목/요약/키워드: R&E network

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Research Paper Classification Scheme based on CNN with LSTM and GRU (CNN과 LSTM 및 GRU 기반 연구 논문 분류 시스템의 설계 및 구현)

  • Dipto, Biswas;Kang, Jihun;Gil, Joon-Min
    • Proceedings of the Korea Information Processing Society Conference
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    • 한국정보처리학회 2022년도 추계학술발표대회
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    • pp.612-614
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    • 2022
  • 최근 딥러닝 기술은 자연어처리에서 기본적이고 필수적인 기법으로 자연어처리에 필요한 복잡한 비선형 관계를 모델링할 수 있다. 본 논문에서는 LSTM(Long Short-Term Memory)과 GRU(Gated Recurrent Unit) 딥러닝 기술을 연구 논문 분류에 적용하며, CNN(Convolutional Neural Network)에 LSTM과 GRU을 각각 결합하여 특정 분야의 연구 논문을 분류하고 연구 논문을 추천하는 기법을 제안한다. 워드 임베딩과 딥러닝 기법을 연구 논문 분류에 적용하여 관심이 있는 단어와 단어 주변의 단어들 사이의 유사성과 성능을 비교 분석한다.

The Link between Fusobacteria and Colon Cancer: a Fulminant Example and Review of the Evidence

  • Martina King;Hermione Hurley;Kevin R. Davidson;Edward C. Dempsey;Michelle A. Barron;Edward D. Chan;Amy Frey
    • IMMUNE NETWORK
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    • 제20권4호
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    • pp.30.1-30.10
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    • 2020
  • Systemic infections due to Fusobacterium may originate in the tonsillar/internal jugular veins or from the abdomen. We encountered a patient who presented with bacteremia, fulminant septic shock, and extensive soft tissue pyogenic infection due to Fusobacterium necrophorum. In addition, there was widespread metastatic colon cancer with the unique finding of pre-mortem co-localization of F. necrophorum and cancer cells at a site distant from the colon. We reviewed the literature of the association of F. necrophorum and colon cancer, and discuss the evidence of how each of these 2 distinct entities may mutually augment the development or progression of the other.

On discrete nonlinear self-tuning control

  • Mohler, R.-R.;Rajkumar, V.;Zakrzewski, R.-R.
    • 제어로봇시스템학회:학술대회논문집
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    • 제어로봇시스템학회 1991년도 한국자동제어학술회의논문집(국제학술편); KOEX, Seoul; 22-24 Oct. 1991
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    • pp.1659-1663
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    • 1991
  • A new control design methodology is presented here which is based on a nonlinear time-series reference model. It is indicated by highly nonlinear simulations that such designs successfully stabilize troublesome aircraft maneuvers undergoing large changes in angle of attack as well as large electric power transients due to line faults. In both applications, the nonlinear controller was significantly better than the corresponding linear adaptive controller. For the electric power network, a flexible a.c. transmission system (FACTS) with series capacitor power feedback control is studied. A bilinear auto-regressive moving average (BARMA) reference model is identified from system data and the feedback control manipulated according to a desired reference state. The control is optimized according to a predictive one-step quadratic performance index (J). A similar algorithm is derived for control of rapid changes in aircraft angle of attack over a normally unstable flight regime. In the latter case, however, a generalization of a bilinear time-series model reference includes quadratic and cubic terms in angle of attack. These applications are typical of the numerous plants for which nonlinear adaptive control has the potential to provide significant performance improvements. For aircraft control, significant maneuverability gains can provide safer transportation under large windshear disturbances as well as tactical advantages. For FACTS, there is the potential for significant increase in admissible electric power transmission over available transmission lines along with energy conservation. Electric power systems are inherently nonlinear for significant transient variations from synchronism such as may result for large fault disturbances. In such cases, traditional linear controllers may not stabilize the swing (in rotor angle) without inefficient energy wasting strategies to shed loads, etc. Fortunately, the advent of power electronics (e.g., high-speed thyristors) admits the possibility of adaptive control by means of FACTS. Line admittance manipulation seems to be an effective means to achieve stabilization and high efficiency for such FACTS. This results in parametric (or multiplicative) control of a highly nonlinear plant.

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Prediction of Water Quality at the Inlet of Saemangeum Bay by using Non-point Sources Runoff Simulation in the Mankyeong River Watershed (만경강 유역의 비점오염물질 유출모의를 통한 새만금 만 유입부의 수질 예측)

  • Ryu, Bum-Soo;Lee, Chae-Young
    • Journal of Korean Society of Water and Wastewater
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    • 제27권6호
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    • pp.761-770
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    • 2013
  • This study was carried out to forecast the flow rate and water quality at the inlet of the Saemangeum bay in Korea using the SWMM(Storm Water Management Model) and the WASP(Water Analysis Simulation Program), and to analyze the impacts of pollutant loading from non-point source on the water quality of the bay. The calibration and validation of flow rate and water quality were performed using those from two monitoring points in the Mankyeong river administrated by Korean Ministry of Environment as part of the national water quality monitoring network. When the river flow rate was calibrated and validated using the rainfall intensities during 2011-2012, $R^2$ (i.e., coefficient of determination) was ranged from 0.91 to 0.96. For water qualities, it was shown that $R^2$ of BOD(Biochemical Oxygen Demand) was ranged from 0.56 to 0.86, and $R^2$ of T-N(Total Nitrogen) was from 0.64 to 0.75, and $R^2$ of T-P(Total Phosphorus) was from 0.67 to 0.89. The integrated modeling system showed significant advances in the accuracy to estimate the water quality. Finally, further simulations showed that annual average flow of the river running into the bay was estimated to be $1.439{\times}10^9m^3/year$. The discharged load of BOD, T-N, and T-P into the bay were anticipated to be 618.7 ton/year, 331.5 ton/year, and 40.4 ton/year, respectively.

Interleukin-18 Binding Protein (IL-18BP): A Long Journey From Discovery to Clinical Application

  • Soohyun Kim;Hyeon Yu;Tania Azam;Charles A. Dinarello
    • IMMUNE NETWORK
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    • 제24권1호
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    • pp.1.1-1.6
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    • 2024
  • IL-18 binding protein (IL-18BP) was originally discovered in 1999 while attempting to identify an IL-18 receptor ligand binding chain (also known as IL-18Rα) by subjecting concentrated human urine to an IL-18 ligand affinity column. The IL-18 ligand chromatography purified molecule was analyzed by protein microsequencing. The result revealed a novel 40 amino acid polypeptide. To isolate the complete open reading frame (ORF), various human and mouse cDNA libraries were screened using cDNA probe derived from the novel IL-18 affinity column bound molecule. The identified entire ORF gene was thought to be an IL-18Rα gene. However, IL-18BP has been proven to be a unique soluble antagonist that shares homology with a variety of viral proteins that are distinct from the IL-18Rα and IL-18Rβ chains. The IL-18BP cDNA was used to generate recombinant IL-18BP (rIL-18BP), which was indispensable for characterizing the role of IL-18BP in vitro and in vivo. Mammalian cell lines were used to produce rIL-18BP due to its glycosylation-dependent activity of IL-18BP (approximately 20 kDa). Various forms of rIL-18BP, intact, C-terminal his-tag, and Fc fusion proteins were produced for in vitro and in vivo experiments. Data showed potent neutralization of IL-18 activity, which seems promising for clinical application in immune diseases involving IL-18. However, it was a long journey from discovery to clinical use although there have been various clinical trials since IL-18BP was discovered in 1999. This review primarily covers the discovery of IL-18BP along with how basic research influences the clinical development of IL-18BP.

Enriching CCL3 in the Tumor Microenvironment Facilitates T cell Responses and Improves the Efficacy of Anti-PD-1 Therapy

  • Tae Gun Kang;Hyo Jin Park;Jihyun Moon;June Hyung Lee;Sang-Jun Ha
    • IMMUNE NETWORK
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    • 제21권3호
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    • pp.23.1-23.16
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    • 2021
  • Chemokines are key factors that influence the migration and maintenance of relevant immune cells into an infected tissue or a tumor microenvironment. Therefore, it is believed that the controlled administration of chemokines in the tumor microenvironment may be an effective immunotherapy against cancer. Previous studies have shown that CCL3, also known as macrophage inflammatory protein 1-alpha, facilitates the recruitment of dendritic cells (DCs) for the presentation of tumor Ags and promotes T cell activation. Here, we investigated the role of CCL3 in regulating the tumor microenvironment using a syngeneic mouse tumor model. We observed that MC38 tumors overexpressing CCL3 (CCL3-OE) showed rapid regression compared with the wild type MC38 tumors. Additionally, these CCL3-OE tumors showed an increase in the proliferative and functional tumor-infiltrating T cells. Furthermore, PD-1 immune checkpoint blockade accelerated tumor regression in the CCL3-OE tumor microenvironment. Next, we generated a modified CCL3 protein for pre-clinical use by fusing recombinant CCL3 (rCCL3) with a non-cytolytic hybrid Fc (HyFc). Administering a controlled dose of rCCL3-HyFc via subcutaneous injections near tumors was effective in tumor regression and improved survival along with activated myeloid cells and augmented T cell responses. Furthermore, combination therapy of rCCL3-HyFc with PD-1 blockade exhibited prominent effect to tumor regression. Collectively, our findings demonstrate that appropriate concentrations of CCL3 in the tumor microenvironment would be an effective adjuvant to promote anti-tumor immune responses, and suggest that administering a long-lasting form of CCL3 in combination with PD-1 blockers can have clinical applications in cancer immunotherapy.

Genetic Diversity of Echinococcus granulosus Genotype G1 in Xinjiang, Northwest of China

  • Yan, Bin;Liu, Xiafei;Wu, Junyuan;Zhao, Shanshan;Yuan, Wumei;Wang, Baoju;Wureli, Hazi;Tu, Changchun;Chen, Chuangfu;wang, Yuanzhi
    • Parasites, Hosts and Diseases
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    • 제56권4호
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    • pp.391-396
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    • 2018
  • Cystic echinococcosis (CE) caused by E. granulosus is a serious helminthic zoonosis in humans, livestock and wildlife. Xinjiang is one of high endemic province for CE in China. A total of 55 sheep and cattle livers containing echinococcal cysts were collected from slaughterhouses in Changji and Yining City, northern region of Xinjiang. PCR was employed for cloning 2 gene fragments, 12S rRNA and CO1 for analysis of phylogenetic diversity of E. granulosus. The results showed that all the samples collected were identified as G1 genotype of E. granulosus. Interestingly, YL5 and CJ75 strains were the older branches compared to those strains from France, Argentina, Australia. CO1 gene fragment showed 20 new genotype haploids and 5 new genotype haplogroups (H1-H5) by the analysis of Network 5.0 software, and the YLY17 strain was identified as the most ancestral haplotype. The major haplotypes, such as CJ75 and YL5 strains, showed identical to the isolates from Middle East. The international and domestic trade of livestock might contribute to the dispersal of different haplotypes for E. granulosus evolution.

CLO (Cross Layer Optimization) Technique for Multi-view Video Streaming Service over WiBro Network (WiBro망에서의 다시점 비디오 스트리밍 서비스를 위한 계층 간 최적화 방식)

  • Son, Jung-Hyun;Cho, Ye-Jin;Suh, Doug-Young;Park, Gwang-Hoon;Kim, Kyu-Heon
    • Journal of Broadcast Engineering
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    • 제13권5호
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    • pp.719-731
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    • 2008
  • This paper defines QoE (Quality of Experience) for multi-view video streaming service over WiBro and proposes the CLO (Cross-Layer Optimization) algorithm can maximize this. Proposal CLO algorithm contains from physical layer to video layer. Under the time-varying wireless channel condition, the CLO technique takes view-wise and the temporal priority of the multi-view video into consideration in order to decide the transmission of frames and its FEC level. At the handover situation, it is shown through computer simulation that the optimal quality of the multi-view video can be achieved using the minimum amount of resources if the proposed CLO technique is applied.

The Roles of Peroxiredoxin and Thioredoxin in Hydrogen Peroxide Sensing and in Signal Transduction

  • Netto, Luis E.S.;Antunes, Fernando
    • Molecules and Cells
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    • 제39권1호
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    • pp.65-71
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    • 2016
  • A challenge in the redox field is the elucidation of the molecular mechanisms, by which $H_2O_2$ mediates signal transduction in cells. This is relevant since redox pathways are disturbed in some pathologies. The transcription factor OxyR is the $H_2O_2$ sensor in bacteria, whereas Cys-based peroxidases are involved in the perception of this oxidant in eukaryotic cells. Three possible mechanisms may be involved in $H_2O_2$ signaling that are not mutually exclusive. In the simplest pathway, $H_2O_2$ signals through direct oxidation of the signaling protein, such as a phosphatase or a transcription factor. Although signaling proteins are frequently observed in the oxidized state in biological systems, in most cases their direct oxidation by $H_2O_2$ is too slow ($10^1M^{-1}s^{-1}$ range) to outcompete Cys-based peroxidases and glutathione. In some particular cellular compartments (such as vicinity of NADPH oxidases), it is possible that a signaling protein faces extremely high $H_2O_2$ concentrations, making the direct oxidation feasible. Alternatively, high $H_2O_2$ levels can hyperoxidize peroxiredoxins leading to local building up of $H_2O_2$ that then could oxidize a signaling protein (floodgate hypothesis). In a second model, $H_2O_2$ oxidizes Cys-based peroxidases that then through thiol-disulfide reshuffling would transmit the oxidized equivalents to the signaling protein. The third model of signaling is centered on the reducing substrate of Cys-based peroxidases that in most cases is thioredoxin. Is this model, peroxiredoxins would signal by modulating the thioredoxin redox status. More kinetic data is required to allow the identification of the complex network of thiol switches.

Analysis of genetic characteristics of pig breeds using information on single nucleotide polymorphisms

  • Lee, Sang-Min;Oh, Jae-Don;Park, Kyung-Do;Do, Kyoung-Tag
    • Asian-Australasian Journal of Animal Sciences
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    • 제32권4호
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    • pp.485-493
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    • 2019
  • Objective: This study was undertaken to investigate the genetic characteristics of Berkshire (BS), Landrace (LR), and Yorkshire (YS) pig breeds raised in the Great Grandparents pig farms using the single nucleotide polymorphisms (SNP) information. Methods: A total of 25,921 common SNP genotype markers in three pig breeds were used to estimate the expected heterozygosity ($H_E$), polymorphism information content, F-statistics ($F_{ST}$), linkage disequilibrium (LD) and effective population size ($N_e$). Results: The chromosome-wise distribution of $F_{ST}$ in BS, LR, and YS populations were within the range of 0-0.36, and the average $F_{ST}$ value was estimated to be $0.07{\pm}0.06$. This result indicated some level of genetic segregation. An average LD ($r^2$) for the BS, LR, and YS breeds was estimated to be approximately 0.41. This study also found an average $N_e$ of 19.9 (BS), 31.4 (LR), and 34.1 (YS) over the last 5th generations. The effective population size for the BS, LR, and YS breeds decreased at a consistent rate from 50th to 10th generations ago. With a relatively faster $N_e$ decline rate in the past 10th generations, there exists possible evidence for intensive selection practices in pigs in the recent past. Conclusion: To develop customized chips for the genomic selection of various breeds, it is important to select and utilize SNP based on the genetic characteristics of each breed. Since the improvement efficiency of breed pigs increases sharply by the population size, it is important to increase test units for the improvement and it is desirable to establish the pig improvement network system to expand the unit of breed pig improvement through the genetic connection among breed pig farms.