• Title/Summary/Keyword: Q-optimal design

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Computational Drug Discovery Approach Based on Nuclear Factor-κB Pathway Dynamics

  • Nam, Ky-Youb;Oh, Won-Seok;Kim, Chul;Song, Mi-Young;Joung, Jong-Young;Kim, Sun-Young;Park, Jae-Seong;Gang, Sin-Moon;Cho, Young-Uk;No, Kyoung-Tai
    • Bulletin of the Korean Chemical Society
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    • v.32 no.12
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    • pp.4397-4402
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    • 2011
  • The NF-${\kappa}B$ system of transcription factors plays a crucial role in inflammatory diseases, making it an important drug target. We combined quantitative structure activity relationships for predicting the activity of new compounds and quantitative dynamic models for the NF-${\kappa}B$ network with intracellular concentration models. GFA-MLR QSAR analysis was employed to determine the optimal QSAR equation. To validate the predictability of the $IKK{\beta}$ QSAR model for an external set of inhibitors, a set of ordinary differential equations and mass action kinetics were used for modeling the NF-${\kappa}B$ dynamic system. The reaction parameters were obtained from previously reported research. In the IKKb QSAR model, good cross-validated $q^2$ (0.782) and conventional $r^2$ (0.808) values demonstrated the correlation between the descriptors and each of their activities and reliably predicted the $IKK{\beta}$ activities. Using a developed simulation model of the NF-${\kappa}B$ signaling pathway, we demonstrated differences in $I{\kappa}B$ mRNA expression between normal and different inhibitory states. When the inhibition efficiency increased, inhibitor 1 (PS-1145) led to long-term oscillations. The combined computational modeling and NF-${\kappa}B$ dynamic simulations can be used to understand the inhibition mechanisms and thereby result in the design of mechanism-based inhibitors.

Development and Evaluation of a SYBR Green Real-time PCR Assay for Canine Cytokine Gene Expression (SYBR Green 실시간 역전사 중합효소연쇄반응을 이용한 개 싸이토카인 유전자 발현의 정량)

  • Yu, Do-Hyeon;Ihn, Dong-Chul;Park, Chul;Park, Jin-Ho
    • Journal of Veterinary Clinics
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    • v.27 no.5
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    • pp.508-513
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    • 2010
  • Cytokines are important mediators of the immune response, and quantitating cytokine mRNA is a highly sensitive and attractive method for measuring cytokine production. The objective of the current study was to develop and validate a SYBR green quantitative real-time reverse transcriptase PCR (qRT-PCR) assay for measuring canine cytokine mRNA. The optimal annealing temperatures ($T_a$) of the designed primers were $62^{\circ}C$ for interleukin (IL)-$1{\beta}$, IL-6 and IL-10; $60^{\circ}C$ for glyceraldehyde 3-phosphate dehydrogenase (GAPDH) and tumor necrosis factor (TNF)-${\alpha}$; and $58^{\circ}C$ for high mobility group box 1 (HMGB1). Primer efficiencies of all primers calculated for standard curve samples were between 97.1% and 102.6%. No evidence of secondary structure or primer-dimer formation was seen via melt-curve analysis or gel electrophoresis. The developed qRT-PCR assays are highly specific and sensitive and can be used to quantify gene expression levels of canine cytokines.

A Study on the Estimation of Optimal Unit Content of Binder for the Soil Stabilizer Using the Recycled Resource in DMM (심층혼합공법에서 순환자원을 활용한 지반안정재의 최적 단위결합재량 산정에 관한 연구)

  • Seo, Se-Gwan;Lee, Khang-Soo;Kim, You-Seong;Cho, Dae-sung
    • Journal of the Korean Geosynthetics Society
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    • v.18 no.2
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    • pp.37-44
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    • 2019
  • The compressive strength of the soil stabilizer in the deep mixing method (DMM) depends on kinds of soil, particle size distribution, and water content. Because of this, Laboratory test has to perform to estimate the unit weight of binder to confirm the satisfaction of the design strength. In this study, uniaxial compression strength was measured by mixing the soil stabilizers developed in the previous study with clay in Busan, Yeosu, and Incheon area. And the strength enhancement effect was evaluated comparing with blast furnace slag cement (BFSC). Also, the relationship between the unit content of binder and uniaxial compressive strength was investigated in order to easily calculate the unit weight of binder required to ensure the stability of the ground at the field. As the results of the analysis, the relationship between the unit content of binder and the uniaxial compressive strength are ${\gamma}_B=(108.93+0.0284q_u){\pm}35$ when W/B is 70%, and ${\gamma}_B=(122.93+0.0270q_u){\pm}40$ when W/B is 80%.

An experimental study on constructing MR secondary suspension for high-speed trains to improve lateral ride comfort

  • Ni, Y.Q.;Ye, S.Q.;Song, S.D.
    • Smart Structures and Systems
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    • v.18 no.1
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    • pp.53-74
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    • 2016
  • This paper presents an experimental study on constructing a tunable secondary suspension for high-speed trains using magneto-rheological fluid dampers (referred to as MR dampers hereafter), in the interest of improving lateral ride comfort. Two types of MR dampers (type-A and type-B) with different control ranges are designed and fabricated. The developed dampers are incorporated into a secondary suspension of a full-scale high-speed train carriage for rolling-vibration tests. The integrated rail vehicle runs at a series of speeds from 40 to 380 km/h and with different current inputs to the MR dampers. The dynamic performance of the two suspension systems and the ride comfort rating of the rail vehicle are evaluated using the accelerations measured during the tests. In this way, the effectiveness of the developed MR dampers for attenuating vibration is assessed. The type-A MR dampers function like a stiffness component, rather than an energy dissipative device, during the tests with different running speeds. While, the type-B MR dampers exhibit significant damping and high current input to the dampers may adversely affect the ride comfort. As part of an ongoing investigation on devising an effective MR secondary suspension for lateral vibration suppression, this preliminary study provides an insight into dynamic behavior of high-speed train secondary suspensions and unique full-scale experimental data for optimal design of MR dampers suitable for high-speed rail applications.

Application of Response Surface Methodology (RSM) for Optimization of Anti-Obesity Effect in Fermented Milk by Lactobacillus plantarum Q180

  • Park, Sun-Young;Cho, Seong-A;Lim, Sang-Dong
    • Food Science of Animal Resources
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    • v.34 no.6
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    • pp.836-843
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    • 2014
  • Obesity, a condition in which an abnormally large amount of fat is stored in adipose tissue, causing an increase in body weight, has become a major public health concern worldwide. The purpose of this study was to optimize the process for fermented milk for the production of a functional product with an anti-obesity effect by using Lactobacillus plantarum Q180 isolated from human feces. We used a 3-factor, 3-level central composite design (CCD) combined with the response surface methodology (RSM). Concentration of skim milk powder (%, $X_1$), incubation temperature ($^{\circ}C$, $X_2$), and incubation time (h, $X_3$) were used as the independent factors, whereas pH (pH, $Y_1$), anti-lipase activity (%, $Y_2$) and anti-adipogenetic activity (%, $Y_3$) were used as the dependent factors. The optimal conditions of fermented milk for the highest anti-lipase and anti-adipogenetic activity with pH 4.4 were the 9.5% of skim milk powder, $37^{\circ}C$ of incubation temperature, 28 h of incubation time. In the fermentation condition, the predicted values of pH, anti-lipase activity and anti-adipogenetic activity were 4.47, 55.55, and 20.48%, respectively. However, the actual values of pH, anti-lipase activity and anti-adipogenetic activity were 4.50, 52.86, and 19.25%, respectively. These results demonstrate that 9.5% of skim milk powder and incubation at $37^{\circ}C$ for 28 h were the optimum conditions for producing functional fermented milk with an anti-obesity effect.

Efficiency Optimization Control of SynRM with FNPI Controller (FNPI 제어기예 의한 SynRM의 효율 최적화 제어)

  • Kang, Sung-Jun;Ko, Jae-Sub;Choi, Jung-Sik;Jang, Mi-Geum;Back, Jung-Woo;Chung, Dong-Hwa
    • Proceedings of the KIEE Conference
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    • 2009.04b
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    • pp.29-31
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    • 2009
  • Optimal efficiency control of synchronous reluctance motor(SynRM) is very important in the sense of energy saving and conservation of natural environment because the efficiency of the SynRM is generally lower than that of other types of AC motors. This paper is proposed an efficiency optimization control for the SynRM which minimizes the copper and iron losses. The design of the speed controller based on fuzzy-neural networks (FN)-PI controller that is implemented using fuzzy control and neural networks. There exists a variety of combinations of d and q-axis current which provide a specific motor torque. The objective of the efficiency optimization control is to seek a combination of d and q-axis current components, which provides minimum losses at a certain operating point in steady state. It is shown that the current components which directly govern the torque production have been very well regulated by the efficiency optimization control scheme. The proposed algorithm allows the electromagnetic losses In variable speed and torque drives to be reduced while keeping good torque control dynamics. The control performance of the proposed controller is evaluated by analysis for various operating conditions. Analysis results are presented to show the validity of the proposed algorithm.

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A Study(VI) on the Development of Charts and Equations Predicting Bearing Capacity for Prebored PHC Piles Socketed into Weathered Rock through Sandy Soil Layers - Axial Compressive Bearing Capacity Prediction Table Solution or Chart Solution - (사질토를 지나 풍화암에 소켓된 매입 PHC말뚝에서 지반의 허용압축지지력 산정도표 및 산정공식 개발에 관한 연구(VI) - 지반의 허용압축지지력 산정용 표해 또는 도해 -)

  • Nam, Moon S.;Kwon, Oh-Kyun;Park, Mincheol;Lee, Chang Uk;Choi, Yongkyu
    • Journal of the Korean Geotechnical Society
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    • v.35 no.11
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    • pp.75-95
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    • 2019
  • The numerical analysis on PHC piles socketed into weathered rocks through sandy soil layers was conducted to propose the table solution or the chart solution to obtain the mobilization capacity. The mobilization capacity was determined at the settlement of 5% pile diameter and applied a safety factor of 3.0. In order to utilize the excellent compressive strength of the PHC pile effectively, it is recommended that the allowable bearing capacity of ground would be designed to be more than the long-term allowable compressive pile load. A procedure for determining an allowable pile capacity for PHC piles socketed into weathered rocks through sandy soil layers is given by the sum of the allowable skin friction of the sandy soil layer and the weathered rock layer and the allowable end bearing capacity of the weathered rock layer. The design efficiency of the PHC pile is about 85% at the reasonable design stage in the verification of the newly proposed method. Thus, long-term allowable compressive load (Pall) level of PHC piles can be utilized in the optimal design stage.

The Optimal Design Technique for Improving Durability of Spline Shaft of the Self Propelled Artillery' Generator (자주포 발전기 스플라인 축 내구성 향상을 위한 최적 설계 기법)

  • Kim, Byeong Ho;Kang, Hyen Jae;Park, Young Il;Seo, Jae Hyun
    • Journal of the Korea Institute of Military Science and Technology
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    • v.18 no.5
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    • pp.485-491
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    • 2015
  • In this study, the experimental and analytical investigation on structural integrity evaluation of spline shaft of self propelled artillery' generator were carried out. For this work, macro and microstructure fractography of spline shaft were observed. According to the results of the structure analysis and simulation, the shaft was redesigned and optimized. To improve the stiffness and shear stress, the material was changed from the SNCM220 to SNCM439 and surface roughness and protective coating treatment are changed to increase the stress relaxation, respectively. From the result of the torsion test of shaft and accelerated life test of generator, the shaft of a SNCM439 with heat-treatment(Q/T) and electroless nickel plating was superior quality reliability and durability than the others. Therefore, modeling and simulation corresponded well with the experimental result and structural safety was confirmed by generator performing.

Development of TEM Coil for Animal Experiments at 3T MRI System

  • Chu, Myung-Ja;Choe, Bo-Young;Kim, Kyung-Nam;Chung, Sung-Taek;Oh, Chang-Hyun;Lee, Hyoung-Koo;Suh, Tae-Suk
    • Proceedings of the KSMRM Conference
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    • 2002.11a
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    • pp.78-78
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    • 2002
  • Purpose: The purpose of this study is to describe a distributed circuit approach to high frequency volume coil design illustrated with specific coils built accordingly and results obtained from animal studies at 3.0 tesla. Method: All experiments were conducted on 3T MRI system (Medinus Co., Ltd. Korea). The tuned TEM resonator measures 15cm outer diameter. by 10cm inside diameter by 30cm in length. The inside diameter and length were determined by animals body or head size (eg. rats or small dogs, etc.) while the outer diameter was chosen for compactness with some sacrifice of the optimal coil Q predicted for a larger cavity. A spin echo sequence with a TR/TE/flip angle=500/12.4ms/$75^{\circ}$was used to check image qualities with phantom. The breed of rat which used for animal images was Sprague-dawley(SD) and was anesthetic using ketamin hydrochloride 75mg/kg.

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Development of Prediction Model of Chloride Diffusion Coefficient using Machine Learning (기계학습을 이용한 염화물 확산계수 예측모델 개발)

  • Kim, Hyun-Su
    • Journal of Korean Association for Spatial Structures
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    • v.23 no.3
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    • pp.87-94
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    • 2023
  • Chloride is one of the most common threats to reinforced concrete (RC) durability. Alkaline environment of concrete makes a passive layer on the surface of reinforcement bars that prevents the bar from corrosion. However, when the chloride concentration amount at the reinforcement bar reaches a certain level, deterioration of the passive protection layer occurs, causing corrosion and ultimately reducing the structure's safety and durability. Therefore, understanding the chloride diffusion and its prediction are important to evaluate the safety and durability of RC structure. In this study, the chloride diffusion coefficient is predicted by machine learning techniques. Various machine learning techniques such as multiple linear regression, decision tree, random forest, support vector machine, artificial neural networks, extreme gradient boosting annd k-nearest neighbor were used and accuracy of there models were compared. In order to evaluate the accuracy, root mean square error (RMSE), mean square error (MSE), mean absolute error (MAE) and coefficient of determination (R2) were used as prediction performance indices. The k-fold cross-validation procedure was used to estimate the performance of machine learning models when making predictions on data not used during training. Grid search was applied to hyperparameter optimization. It has been shown from numerical simulation that ensemble learning methods such as random forest and extreme gradient boosting successfully predicted the chloride diffusion coefficient and artificial neural networks also provided accurate result.