• 제목/요약/키워드: Pseudomonas sp. S-47

검색결과 21건 처리시간 0.059초

Serratia marcescens KCTC 2172로부터 pst operon의 클로닝 및 해석 (Molecular Cloning and Analysis of Phosphate Specific Transport (pst) Operon from Serratia marcescens KCTC 2172)

  • 이승진;이용석;이상철;박인혜;안순철;최용락
    • 생명과학회지
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    • 제19권5호
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    • pp.566-572
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    • 2009
  • S. marcescens KCTC 2172로부터 유전자 은행을 작성하여 재조합 클론 pDH3를 얻었으며, pDH3 유래의 서브클론을 작성하였다. 플라스미드 pPH4의 전염기서열 5,137 bp 영역을 결정한 결과 3개의 ORF가 있음을 확인하였다. 이들은 pst 오페론의 pstC, pstA, 및 pstB, 세 유전자를 동일 전사방향으로 코드하고 있었다. 타 세균의 유전자와 비교한 결과 S. marcescens의 pst 오페론은 pstS와 phoU가 결손되어 있다. 조절영역에는 CRP 결합영역과 pho box 서열이 존재하였다. 보고된 유전자와 상동성 조사결과, PstC 단백질은 Yersinia sp., Vibrio sp. 및 Pseudomonas sp.와는 49, 37, 33%의 상동성을, PstA 단백질은 Yersinia sp., Vibrio sp. 및 Pseudomonas sp.와 64, 51, 47%의 상동성을, PstB 단백질은 Methanocaldococcus sp., E. coli 및 Mycoplasma sp.와 60, 50, 48%의 상동성을 나타내었다. Pst 유전자들은 조절영역의 cAMP-CRP 복합체에 의해 in vivo에서 양성적으로 발현됨을 확인하였다. Pst 오페론을 포함하는 플라스미드를 도입한 대장균은 인산운송에 관여하는 능력을 확인하였다.

Preliminary X-Ray Diffraction Study of Glutathione S-Transferase from Pseudomonas sp. DJ77

  • Choi, Heung-Soo;Woo, Ju-Rang;Lee, Jung-Hee;Chung, An-Sik;Ryu, Seong-Eon;Kim, Young-Chang;Chung, Yong-Je
    • BMB Reports
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    • 제30권4호
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    • pp.296-298
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    • 1997
  • A bacterial glutathione S-transferase from Pseudomonas sp. DJ77 has been crystallized. The crystals diffract to at least $2.3\;\AA$ resolution, and belong to the orthorhombic space group $P2_{1}2_{1}2_{1}$, with cell parameters $a=97.4\;\AA,\;b=100.3\;\AA$, and $c=46.0\;\AA$. There is one dimer molecule of pGST per crystallographic asymmetric unit. with the crystal volume per protein mass of $2.34\;\AA^3/dalton$ and a solvent content of about 47% (v/v).

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폭약 TNT를 분해하는 세균인 Pseudomonas SP. HK-6에서 분리정제된 Nitroreductase의 특성연구 (Characterization of Nitroreductase Purified from TNT-degrading Bacterium, Pseudomonas sp. HK-6.)

  • 호은미;강형일;오계헌
    • 한국미생물·생명공학회지
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    • 제32권3호
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    • pp.230-237
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    • 2004
  • 균주 Pseudomonas sp. HK-6로부터 2,4,6-trinitrotoluene (TNT)의 대사 과정에서 유도되는 nitroreductase (NTR)를 분리 및 정제하여 다양한 특성조사를 실시하였다. NTR은 균주 HK-6의 세포추출물로부터 ammonium sulfate 침전, DEAE-sepharose, 그리고 Q-sepharose chromatography의 일련의 과정을 통하여 분리되었고, NTR의 활성을 가지는 세개의 다른 fractions를 확인하였다. 균주 HK-6의 NTR fractions I, II, 그리고 III의 비 활성은 각각 4.85 unit/mg, 5.47 unit/mg, 5.01 unit/mg으로 측정되었으며, 세포추출물에 비해 각각 9.0배, 10.1배, 9.3배 농축된 것으로 나타났다. SDS-PAGE에서 측정된 균주 HK-6의 NTR fractions I, II 그리고 III의 분자량은 모두 약 27 kDa으로 확인되었다. 정제된 NTR의 활성에 온도, pH, 금속 이온, 억제 물질의 효과와 기질 특이성 등에 대한 물리화학적 특성 조사를 실시하였다. 균주 HK-6의 NTR fractions I, II, 그리고 III의 적정온도는 $25~35^{\circ}C$ 확인되었고, 모두 $30^{\circ}C$에서 최대 활성을 나타내었으며, 이들 효소 활성의 적정 pH는 7.0~8.0이었고, 최적 pH는 7.5로 확인되었다. TNT에 대한 HK-6의 NTR fractions I, II, 그리고 III의 활성은 금속 이온 $Ag^{+}$ , $Cu^{2+}$ , 그리고 $Hg^{V}$ 에 의해서 약 70%이상 저해되었으며, $Mn^{2+}$ 또는 $Ca^{2+}$ 에 의해서 약 20~50%로 활성이 억제되었다. 그러나 $Fe^{2+}$ /첨가 시에는 효소의 활성에 크게 영향을 미치지 않는 것으로 나타났다. NTR의 활성에 대한 억제물질의 영향은 $\beta$-mercaptoethanol 첨가 시에 효소의 활성이 모두 억제되었고, dithiothreitol, EDTA, 그리고 NaCl 첨가시에도 활성이 감소하는 것으로 확인되었다. TNT와 그 유사기질을 이용하여 HK-6에서 분리된 NTR의 기질 특이성을 조사한 결과, TNT, nitrobenzene, 그리고 RDX에 대해서는 비교적 활성이 높게 나타났으나 2,6-DNT와 2,4-DNT에서는 낮은 활성을 나타내는 것으로 확인되었다.

Reduction of Hydrogen Sulphide in Chicken Manure by Immobilized Sulphur Oxidising Bacteria Isolated from Hot Spring

  • Hidayat, M.Y.;Saud, H.M.;Samsudin, A.A.
    • 한국미생물·생명공학회지
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    • 제47권1호
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    • pp.116-124
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    • 2019
  • The rapid development of the poultry industry has led to the production of large amounts of manure, which produce substances like hydrogen sulfide ($H_2S$) that contribute to odor pollution. $H_2S$ is a highly undesirable gas component and its removal from the environment is therefore necessary. Sulfur-oxidizing bacteria (SOB) are widely known to remove contaminating $H_2S$ due to their ability to oxidize reduced sulfur compounds. In this study, three potential SOB (designated AH18, AH25, and AH28) that were previously isolated from a hot spring in Malaysia were identified by 16S rRNA gene analysis. Laboratory-scale biological deodorization experiments were conducted to test the performance of the three isolates-in the form of pure or mixed cultures, with the cells immobilized onto alginate as a carrier-in reducing the $H_2S$ from chicken manure. On the basis of 16S rRNA phylogenetic analysis, isolate AH18 was identified as Pseudomonas sp., whereas isolates AH25 and AH28 were identified as Achromobacter sp. The most active deodorizing isolate was AH18, with an $H_2S$ reduction rate of 74.7% (p < 0.05). Meanwhile, the reduction rates for isolates AH25 and AH28 were 54.2% and 60.8% (p > 0.05), respectively. However, the $H_2S$ removal performance was enhanced in the mixed culture, with a reduction rate of 81.9% (p < 0.05). In conclusion, the three potential SOB isolates were capable of reducing the $H_2S$ from chicken manure in the form of a pure culture immobilized on alginate, and the reduction performance was enhanced in the mixed culture.

Antimicrobial Activity of Prodigiosin from Serratia sp. PDGS120915 Against Intestinal Pathogenic Bacteria

  • Ji, Keunho;Kim, Young Tae
    • 한국미생물·생명공학회지
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    • 제47권3호
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    • pp.459-464
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    • 2019
  • This study aimed to identify and characterize the antimicrobial activity of prodigiosin produced by Serratia sp. $PDGS^{120915}$ isolated from stream water in Busan, Korea; the identification was performed using phonological, biochemical, and molecular techniques, including 16S rRNA sequence analysis. Prodigiosin from the bacterial culture was purified by high-performance liquid chromatography (HPLC), and its antimicrobial activity and minimum inhibitory concentrations (MICs) were evaluated against 10 intestinal pathogenic gram-positive and negative bacteria. The results revealed that the isolated prodigiosin exhibited high antimicrobial activity against Listeria monocytogenes, Bacillus cereus, Pseudomonas aeruginosa, Salmonella typhimurium, Staphylococcus aureus, and Vibrio parahaemolyticus; further, the isolated prodigiosin showed minimum inhibitory concentrations (MICs) between $3{\mu}g/ml$ and 30 mg/ml, but they were not active against Bacillus subtilis, Enterococcus faecalis, Klebsiella pneumonia, and Escherichia coli. In conclusion, prodigiosin isolated from Serratia sp. $PDGS^{120915}$ showed high antimicrobial activity against intestinal pathogenic bacteria and has potential applications in the development of new antimicrobial agents.

Metabolic Profiling and Biological Activities of Bioactive Compounds Produced by Pseudomonas sp. Strain ICTB-745 Isolated from Ladakh, India

  • Kama, Ahmed;Shaik, Anver Basha;Kumar, C. Ganesh;Mongolla, Poornima;Rani, P. Usha;Krishna, K.V.S. Rama;Mamidyala, Suman Kumar;Joseph, Joveeta
    • Journal of Microbiology and Biotechnology
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    • 제22권1호
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    • pp.69-79
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    • 2012
  • In an ongoing survey of the bioactive potential of microorganisms from Ladakh, India, the culture medium of a bacterial strain of a new Pseudomonas sp., strain ICTB-745, isolated from an alkaline soil sample collected from Leh, Ladakh, India, was found to contain metabolites that exhibited broad-spectrum antimicrobial and biosurfactant activities. Bioactivity-guided purification resulted in the isolation of four bioactive compounds. Their chemical structures were elucidated by $^1H$ and $^{13}C$ NMR, 2D-NMR (HMBC, HSQC, $^1H$,$^1H$-COSY, and DEPT-135), FT-IR, and mass spectroscopic methods, and were identified as 1-hydroxyphenazine, phenazine-1-carboxylic acid (PCA), rhamnolipid-1 (RL-1), and rhamnolipid-2 (RL-2). These metabolites exhibited various biological activities like antimicrobial and efficient cytotoxic potencies against different human tumor cell lines such as HeLa, HepG2, A549, and MDA MB 231. RL-1 and RL-2 exhibited a dose-dependent antifeedant activity against Spodoptera litura, producing about 82.06% and 73.66% antifeedant activity, whereas PCA showed a moderate antifeedant activity (63.67%) at 60 ${\mu}g/cm^2$ area of castor leaf. Furthermore, PCA, RL-1, and RL-2 exhibited about 65%, 52%, and 47% mortality, respectively, against Rhyzopertha dominica at 20 ${\mu}g/ml$. This is the first report of rhamnolipids as antifeedant metabolites against Spodoptera litura and as insecticidal metabolites against Rhyzopertha dominica. The metabolites from Pseudomonas sp. strain ICTB-745 have interesting potential for use as a biopesticide in pest control programs.