• Title/Summary/Keyword: Principle component analysis

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Rapid metabolic discrimination between Zoysia japonica and Zoysia sinica based on multivariate analysis of FT-IR spectroscopy (FT-IR스펙트럼 데이터의 다변량통계분석 기반 들잔디와 갯잔디의 대사체 수준 신속 식별 체계)

  • Yang, Dae-Hwa;Ahn, Myung Suk;Jeong, Ok-Cheol;Song, In-Ja;Ko, Suk-Min;Jeon, Ye-In;Kang, Hong-Gyu;Sun, Hyeon-Jin;Kwon, Yong-Ik;Kim, Suk Weon;Lee, Hyo-Yeon
    • Journal of Plant Biotechnology
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    • v.43 no.2
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    • pp.213-222
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    • 2016
  • This study aims to establish a system for the rapid discrimination of Zoysia species using metabolite fingerprinting of FT-IR spectroscopy combined with multivariate analysis. Whole cell extracts from leaves of 19 identified Zoysia japonica, 6 identified Zoysia sinica, and 38 different unidentified Zoysia species were subjected to Fourier transform infrared spectroscopy (FT-IR). PCA (principle component analysis) and PLS-DA (partial least square discriminant analysis) from FT-IR spectral data successfully divided the 25 identified turf grasses into two groups, representing good agreement with species identification using molecular markers. PC (principal component) loading values show that the $1,100{\sim}950cm^{-1}$ region of the FT-IR spectra are important for the discrimination of Zoysia species. A dendrogram based on hierarchical clustering analysis (HCA) from the PCA and PLS-DA data of turf grasses showed that turf grass samples were divided into Zoysia japonica and Zoysia sinica in a species-dependent manner. PCA and PLS-DA from FT-IR spectral data of Zoysia species identified and unidentified by molecular markers successfully divided the 49 turf grasses into Z. japonica and Z. sinica. In particular, PLS-DA and the HCA dendrogram could mostly discriminate the 47 Z. japonica grasses into two groups depending on their origins (mountainous areas and island area). Considering these results, we suggest that FT-IR fingerprinting combined with multivariate analysis could be applied to discriminate between Zoysia species as well as their geographical origins of various Zoysia species.

On the Numerical Analysis of Korean Food Supply Pattern ($1962{\sim}1969$) (우리나라 식량공급양상(食量供給樣相)의 수량적고찰(數量的考察)($1962{\sim}1969$))

  • Kwon, Tai-Wan;Lee, Yong-Hyun
    • Korean Journal of Food Science and Technology
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    • v.4 no.2
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    • pp.140-150
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    • 1972
  • Using methods of principle component analysis and pattern of analysis. Korean food supply pattern and its change (1962-1969) have been compared whit those of other 40 countries. 1) Among the 4 groups classified on the first and second principle components, Korea belongs to the highest crop grain dependent group of Asia. Although Korea is identified as one of the highest crop consuming countries among the group, a significant increase in the consumption of fruits and vegetables is noticed during the period. 2) According to the pattern of numerics analysis Korean food supply pattern (1969) is similar with those of Japan (1949), philippines, Taiwan, while is quite apart from those of U.S.A., W. Germany, France and Australia. 3) During the period the food supply pattern of Korea has been changed significantly toward the more common locations on the world food supply pattern map. Yet the location is far from the desirable one and its moving direction is characteristic, differing not only those of Europian countries but also Asian neighborhoods. this unique pattern should receive a careful examination and thus proper measures should be undertaken to take care of optimal nation's nutritional requirements.

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Driver Assistance System for Integration Interpretation of Driver's Gaze and Selective Attention Model (운전자 시선 및 선택적 주의 집중 모델 통합 해석을 통한 운전자 보조 시스템)

  • Kim, Jihun;Jo, Hyunrae;Jang, Giljin;Lee, Minho
    • The Journal of the Institute of Internet, Broadcasting and Communication
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    • v.16 no.3
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    • pp.115-122
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    • 2016
  • This paper proposes a system to detect driver's cognitive state by internal and external information of vehicle. The proposed system can measure driver's eye gaze. This is done by concept of information delivery and mutual information measure. For this study, we set up two web-cameras at vehicles to obtain visual information of the driver and front of the vehicle. We propose Gestalt principle based selective attention model to define information quantity of road scene. The saliency map based on gestalt principle is prominently represented by stimulus such as traffic signals. The proposed system assumes driver's cognitive resource allocation on the front scene by gaze analysis and head pose direction information. Then we use several feature algorithms for detecting driver's characteristics in real time. Modified census transform (MCT) based Adaboost is used to detect driver's face and its component whereas POSIT algorithms are used for eye detection and 3D head pose estimation. Experimental results show that the proposed system works well in real environment and confirm its usability.

Evaluation of Water Quality Characteristics and Grade Classification of Yeongsan River Tributaries (영산강 수계 지류.지천의 수질 특성 평가 및 등급화 방안)

  • Jung, Soojung;Kim, Kapsoon;Seo, Dongju;Kim, Junghyun;Lim, Byungjin
    • Journal of Korean Society on Water Environment
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    • v.29 no.4
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    • pp.504-513
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    • 2013
  • Water quality trends for major tributaries (66 sites) in the Yeongsan River basin of Korea were examined for 12 parameters based on water quality data collected every month over a period of 12 months. The complex data matrix was treated with multivariate analysis such as PCA, FA and CA. PCA/FA identified four factors, which are responsible for the structure explaining 78.2% of the total variance. The first factor accounting 27.3% of the total variance was correlated with BOD, TN, TP, and TOC, and weighting values were allowed to these parameters for grade classification. CA rendered a dendrogram, where monitoring sites were grouped into 5 clusters. Cluster 2 corresponds to high pollution from domestic wastewater, wastewater treatment and run-off from livestock farms. For grade classification of tributaries, scores to 10 indexes were calculated considering the weighting values to 3 parameters as BOD, TN and TP which were categorized as the first factor after FA. The highest-polluted group included 10 tributaries such as Gwangjucheon, Jangsucheon, Daejeoncheon, Gamjungcheon, Yeongsancheon. The results indicate that grade classification method suggested in this study is useful in reliable classification of tributaries in the study area.

Aerosol Characterization Study for Individual Particle of PM10, PM2.5 Observed in Industrial Area (산업단지내 미세먼지 및 토양입자의 개별입자 분석)

  • Lee, Dong-Hyun;Kim, Yong-Seok;Suh, Jeong-Min;Choi, Kum-Chan
    • Journal of Environmental Science International
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    • v.22 no.1
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    • pp.7-15
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    • 2013
  • Aerosol characterization study for individual particle in Busan metropolitan industrial complex was carried out from December 2010 to August 2011. SEM(scanning electron microscope)-EDX(energy dispersive x-ray) analysis was used for the analysis of 600 single particles during the sampling periods to identify non-metallic aerosol particle sources. Average $PM_{10}$ concentration was 65.5 ${\mu}g/m^3$ in summer, 104.1 ${\mu}g/m^3$ in winter during the sample periods. And Average $PM_{2.5}$ concentration was 24.5 ${\mu}g/m^3$ in summer, 64.5 ${\mu}g/m^3$ in winter individually. Particle density, enrichment factor, correlation analysis, principle component analysis were performed based on chemical composition data. Particle density distribution was measured to 2~4 $g/cm^3$, and the density of $PM_{2.5}$ was measured above 3 $g/cm^3$. In general, the elements Si, Ca, Fe and Al concentrations were higher in all samples of individual particles. The non-ferrous elements Zn, Br, Pb, Cu concentrations were higher in summer than in winter. The concentrations were not changed with the seasons because of non-ferrous industry emission pattern.

Reliability Prediction of Electronic Arm Fire Device Applying Sensitivity Analysis (민감도 해석을 적용한 전자식 점화안전장치의 신뢰도 추정)

  • Kim, Dong-seong;Jang, Seung-gyo;Lee, Hyo-Nam;Son, Young Kap
    • Journal of the Korean Society for Aeronautical & Space Sciences
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    • v.46 no.5
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    • pp.393-401
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    • 2018
  • Reliability prediction of an electronic arm fire device(EAFD) was studied which is applied to prevent accidental ignition in a solid rocket motor. For predicting the reliability, the main components of the EAFD were first defined(Control unit, LEEFI, TBI) and the operating principle of each component was analyzed. Performance modeling of each part is established using selected input variables through system analysis. When complex analysis is required, we approximated it with polynomial equation using response surface method. Monte-Carlo simulation is applied to performance modeling to estimate the design reliability.

Development of an SNP set for marker-assisted breeding based on the genotyping-by-sequencing of elite inbred lines in watermelon (수박 엘리트 계통의 GBS를 통한 마커이용 육종용 SNP 마커 개발)

  • Lee, Junewoo;Son, Beunggu;Choi, Youngwhan;Kang, Jumsoon;Lee, Youngjae;Je, Byoung Il;Park, Younghoon
    • Journal of Plant Biotechnology
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    • v.45 no.3
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    • pp.242-249
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    • 2018
  • This study was conducted to develop an SNP set that can be useful for marker-assisted breeding (MAB) in watermelon (Citrullus. lanatus L) using Genotyping-by-sequencing (GBS) analysis of 20 commercial elite watermelon inbreds. The result of GBS showed that 77% of approximately 1.1 billion raw reads were mapped on the watermelon genome with an average mapping region of about 4,000 Kb, which indicated genome coverage of 2.3%. After the filtering process, a total of 2,670 SNPs with an average depth of 31.57 and the PIC (Polymorphic Information Content) value of 0.1~0.38 for 20 elite inbreds were obtained. Among those SNPs, 55 SNPs (5 SNPs per chromosome that are equally distributed on each chromosome) were selected. For the understanding genetic relationship of 20 elite inbreds, PCA (Principal Component Analysis) was carried out with 55 SNPs, which resulted in the classification of inbreds into 4 groups based on PC1 (52%) and PC2 (11%), thus causing differentiation between the inbreds. A similar classification pattern for PCA was observed from hierarchical clustering analysis. The SNP set developed in this study has the potential for application to cultivar identification, F1 seed purity test, and marker-assisted backcross (MABC) not only for 20 elite inbreds but also for diverse resources for watermelon breeding.

Use of the Quantitatively Transformed Field Soil Structure Description of the US National Pedon Characterization Database to Improve Soil Pedotransfer Function

  • Yoon, Sung-Won;Gimenez, Daniel;Nemes, Attila;Chun, Hyen-Chung;Zhang, Yong-Seon;Sonn, Yeon-Kyu;Kang, Seong-Soo;Kim, Myung-Sook;Kim, Yoo-Hak;Ha, Sang-Keun
    • Korean Journal of Soil Science and Fertilizer
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    • v.44 no.5
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    • pp.944-958
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    • 2011
  • Soil hydraulic properties such as hydraulic conductivity or water retention which are costly to measure can be indirectly generated by soil pedotransfer function (PTF) using easily obtainable soil data. The field soil structure description which is routinely recorded could also be used in PTF as an input to reduce the uncertainty. The purposes of this study were to use qualitative morphological soil structure descriptions and soil structural index into PTF and to evaluate their contribution in the prediction of soil hydraulic properties. We transformed categorical morphological descriptions of soil structure into quantitative values using categorical principal component analysis (CATPCA). This approach was tested with a large data set from the US National Pedon Characterization database with the aid of a categorical regression tree analysis. Six different PTFs were used to predict the saturated hydraulic conductivity and those results were averaged to quantify the uncertainty. Quantified morphological description was successively used in multiple linear regression approach to predict the averaged ensemble saturated conductivity. The selected stepwise regression model with only the transformed morphological variables and structural index as predictors predicted the $K_{sat}$ with $r^2$ = 0.48 (p = 0.018), indicating the feasibility of CATPCA approach. In a regression tree analysis, soil structure index and soil texture turned out to be important factors in the prediction of the hydraulic properties. Among structural descriptions size class turned out to be an important grouping parameter in the regression tree. Bulk density, clay content, W33 and structural index explained clusters selected by a two step clustering technique, implying the morphologically described soil structural features are closely related to soil physical as well as hydraulic properties. Although this study provided relatively new method which related soil structure description to soil structure index, the same approach should be tested using a datasets containing the actual measurement of hydraulic properties. More insight on the predictive power of soil structure index to estimate hydraulic properties would be achieved by considering measured the saturated hydraulic conductivity and the soil water retention.

Validation of High-Performance Liquid Chromatography Analysis on Phenolic Substances of Cirsium setidens and Sedative Effect of Pectolinarin as the Active Principle

  • Nugroho, Agung;Kim, Myung-Hoe;Lim, Sang-Cheol;Choi, Jong-Won;Choi, Jae-Sue;Park, Hee-Juhn
    • Natural Product Sciences
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    • v.17 no.4
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    • pp.342-349
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    • 2011
  • This study was performed to determine the composition of phenolic substances contained in the leaves of Cirsium setidens (Compositae), validate the high-performance liquid chromatography (HPLC) method, and determine the in vivo sedative effect of the main component pectolinarin. Six phenolic compounds isolated from C. setidens were spectroscopically identified as chlorogenic acid (1), hyperoside (2), 3,4-di-O-caffeoylquinic acid (3), caffeic acid methyl ester (4), linarin (5), and pectolinarin (6) and then used as standard compounds for HPLC analysis. HPLC proved to be precise, accurate, and sensitive for the simultaneous analysis of the phenolic substances. In particular, six compounds showed good regression ($R^2$ > 0.999) within test ranges and recovery was in the range of 95.4 - 104.8%. The content of pectolinarin was considerably higher (156.48 mg/g) than those of other phenolic substances including the other flavone glycoside, linarin (18.99 mg/g). The contents of other phenolic substances, in order, were chlorogenic acid (8.41 mg/g), 3,4-di-O-caffeoylquinic acid (5.74 mg/g), hyperoside (4.33 mg/g), and caffeic acid methyl ester (0.51 mg/g). Oral administration with compound 6 (10 and 20 mg/kg) enhanced the sleeping time induced by pentobarbital in mice, indicating that it has a sedative effect.

Difference in the Visual Preference of the Bridges - The Case of the Han River - (교량의 시각적 선호도의 차이 - 한강의 교량을 대상으로 -)

  • Huh, Joon
    • Journal of the Korean Institute of Landscape Architecture
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    • v.30 no.2
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    • pp.1-11
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    • 2002
  • The purpose of this study is to investigate landscape image and define elements of difference in visual preference of bridges on the Han River. To do this end, video was used as a media for the evaluation of the landscape image of 16 bridges on the Han River using a Semantic Differential scale. Data is collected by 50 students from Woosuk University, majoring landscape architecture. Final analysis utilized a total of 704 samples of data. Data is analyzed through descriptive statistics, and spatial image is analyzed by factor analysis algorithm Principle component analysis using Varimax method is applied far extraction and factor rotation. T-test is used to find the difference between the bridge type of preference with the data of factor score. Logistic regression is used to select the factors that influences the visual preference among the image factors. The results of this study can be summarized as follows; The image of whole bridges on the Han River is somewhat orderly, sequential and open. The degree of visual preference of unique bridge type is higher than normal but there are some differences in visual preference within the same type of structure. This suggests that the surrounding landscape is one of the important factor for visual preference. Factors covering the image of bridge are found to be 'aesthetic', 'structure','spatial factor', and 'shape'. Total variance is obtained as 60.4%. The aesthetic variables are the most important factor for visual preference and the structural factor presents no significant difference in visual preference between more preferred and less preferred bridges. Since the collapse of Songsu Bridge, we thought the structural factor is very important but the results of this study suggest that it is more important to consider the aesthetic and spatial factors of the bridge to increase the visual preference when planning and designing bridges. Simulations with more detailed data about surroundings should be utilized practical design.