• Title/Summary/Keyword: Principal Components

Search Result 1,002, Processing Time 0.025 seconds

Phylogenetic Relationship of Araliaceae in Korea by Seed Morphological Characteristics (종자 외부형태학적 특성에 의한 한국산 두릅나무과(Araliaceae) 식물의 종간 유연관계)

  • Kim, Geon-Rae;Kim, Hae-Ran;Choi, Hyung-Soon;Han, Jin-Gyu;Kim, Soo-Young;Kim, Chan-Soo
    • Journal of Wetlands Research
    • /
    • v.17 no.2
    • /
    • pp.139-145
    • /
    • 2015
  • The purpose of this study is to describe and compare the morphological characteristics of seeds of 12 taxa of Araliaceae, and to evaluate their possible use for taxonomic considerations. For light microscope observations and measurements, the seeds were observed using Image Analyzing System. The observations were made on twenty randomly selected seeds of each species. Obtained data were statistically processed using analysis of variance. Principal Components Analysis indicated four groups of characters, the genera Aralia, Eleutherococcus, Panax and the others, which explained 65.47% of the total variation. As a results of Cluster Analysis using the eleven variables, 12 species of Araliaceae were also discriminated into four groups. Eleutherococcus senticosus and E. gracilistylus were closely related, which is well supported by the results from recent molecular studies. Also, the genera Dendropanax and Eleutherococcus were closely related in terms of seed characters.

Comparative analysis of sensory profiles of commercial cider vinegars from Korea, China, Japan, and US by SPME/GC-MS, E-nose, and E-tongue (한국, 중국, 일본, 미국산 시판 사과식초의 관능적 품질 비교를 위한 SPME-GC/MS, 전자코 및 전자혀 분석)

  • Jo, Yunhee;Gu, Song-Yi;Chung, Namhyeok;Gao, Yaping;Kim, Ho-Jin;Jeong, Min-Hee;Jeong, Yong-Jin;Kwon, Joong-Ho
    • Korean Journal of Food Science and Technology
    • /
    • v.48 no.5
    • /
    • pp.430-436
    • /
    • 2016
  • Solid phase microextraction and gas chromatography-mass spectrometry (SPME/GC-MS), electronic nose, and electronic tongue were used to characterize the sensory profiles of cider vinegars from Korea (K1-2), China (C1-2), Japan (J1-2), and US (U1-2). SPME-GC/MS detected acetic acid as the common volatile compound in all vinegars, in addition to isovaleric acid, octanoic acid, and phenethyl acetate. Acids and acetic esters were the major components of Korean and US vinegar samples, respectively. Chinese vinegars had high ethyl acetate content, while Japanese samples were characterized by a low content of acetic acid. Principal component analysis (PCA) pattern provided a clear categorical discrimination of Chinese vinegars by E-nose and E-tongue analyses. The instrumental sensory scores and the taste attributes for flavor ($r^2=0.9431$), sourness ($r^2=0.9515$), and sweetness ($r^2=0.8325$) were highly correlated. Therefore, SPME/GC-MS, E-nose, and E-tongue analyses may be useful tools to discriminate the sensory profiles of cider vinegars of different origins.

A reappraisal of Sambucus pendula Nakai on Ulleung Island and its allies (울릉도 말오줌나무와 근연종의 재검토)

  • Lim, Hyo-In;Chang, Kae Sun;Lee, Heung Soo;Chang, Chin-Sung;Kim, Hui
    • Korean Journal of Plant Taxonomy
    • /
    • v.39 no.3
    • /
    • pp.181-192
    • /
    • 2009
  • Sambucus pendula Nakai, which is an endemic on Ulleung Island of Korea, is characterized by a large pendulous inflorescence and small fruit. A set of 256 individuals were used to investigate the patterns of intraspecific variation of S. racemosa subsp. kamtchatica, S. racemosa subsp. sieboldiana, and S. williamsii including S. pendula using PCA (principal components analysis). This analysis showed that S. pendula was distinct based on its large inflorescence and long peduncle. Our data showed a morphological distinction between subsp. kamtchatica from northeastern areas and subsp. sieboldiana from Jeju Island, but the two taxa overlap in the southern and eastern parts of Korea in terms of chromosome number, color of style, and allozyme data. Our study agrees that S. pendula on Ulleung Island may be the result of genetic drift that occurred during isolation since the Quarternary period. This has been suggested as a reason for the genetic differences observed between two taxa and would explain the unique variation patterns of S. pendula. However, the morphological differentiation between the S. racemosa complex and S. pendula is not considered sufficient to warrant recognition of specific status. Therefore, we recommend that only one polymorphic species of S. racemosa in Eurasia be recognized and that S. pendula be considered a subspecies of S. racemosa.

A Comparison of Pixel- and Segment-based Classification for Tree Species Classification using QuickBird Imagery (QuickBird 위성영상을 이용한 수종분류에서 픽셀과 분할기반 분류방법의 정확도 비교)

  • Chung, Sang Young;Yim, Jong Su;Shin, Man Yong
    • Journal of Korean Society of Forest Science
    • /
    • v.100 no.4
    • /
    • pp.540-547
    • /
    • 2011
  • This study was conducted to compare classification accuracy by tree species using QuickBird imagery for pixel- and segment-based classifications that have been mostly applied to classify land covers. A total of 398 points was used as training and reference data. Based on this points, the points were classified into fourteen land cover classes: four coniferous and seven deciduous tree species in forest classes, and three non-forested classes. In pixel-based classification, three images obtained by using raw spectral values, three tasseled indices, and three components from principal component analysis were produced. For the both classification processes, the maximum likelihood method was applied. In the pixel-based classification, it was resulted that the classification accuracy with raw spectral values was better than those by the other band combinations. As resulted that, the segment-based classification with a scale factor of 50% provided the most accurate classification (overall accuracy:76% and ${\hat{k}}$ value:0.74) compared to the other scale factors and pixel-based classification.

Plasma metabolites associated with physiological and biochemical indexes indicate the effect of caging stress on mallard ducks (Anas platyrhynchos)

  • Zheng, Chao;Wu, Yan;Liang, Zhen Hua;Pi, Jin Song;Cheng, Shi Bin;Wei, Wen Zhuo;Liu, Jing Bo;Lu, Li Zhi;Zhang, Hao
    • Animal Bioscience
    • /
    • v.35 no.2
    • /
    • pp.224-235
    • /
    • 2022
  • Objective: Cage rearing has critical implications for the laying duck industry because it is convenient for feeding and management. However, caging stress is a type of chronic stress that induces maladaptation. Environmental stress responses have been extensively studied, but no detailed information is available about the comprehensive changes in plasma metabolites at different stages of caging stress in ducks. We designed this experiment to analyze the effects of caging stress on performance parameters and oxidative stress indexes in ducks. Methods: Liquid chromatography tandem mass spectrometry (LC/MS-MS) was used to determine the changes in metabolites in duck plasma at 5 (CR5), 10 (CR10), and 15 (CR15) days after cage rearing and traditional breeding (TB). The associated pathways of differentially altered metabolites were analyzed using Kyoto encyclopedia of genes and genomes (KEGG) database. Results: The results of this study indicate that caging stress decreased performance parameters, and the plasma total superoxide dismutase levels were increased in the CR10 group compared with the other groups. In addition, 1,431 metabolites were detected. Compared with the TB group, 134, 381, and 190 differentially produced metabolites were identified in the CR5, CR10, and CR15 groups, respectively. The results of principal component analysis (PCA) show that the selected components sufficiently distinguish the TB group and CR10 group. KEGG analysis results revealed that the differentially altered metabolites in duck plasma from the CR5 and TB groups were mainly associated with ovarian steroidogenesis, biosynthesis of unsaturated fatty acids, and phenylalanine metabolism. Conclusion: In this study, the production performance, blood indexes, number of metabolites and PCA were compared to determine effect of the caging stress stage on ducks. We inferred from the experimental results that caging-stressed ducks were in the sensitive phase in the first 5 days after caging, caging for approximately 10 days was an important transition phase, and then the duck continually adapted.

Gut microbiota profiling in aged dogs after feeding pet food contained Hericium erinaceus

  • Hyun-Woo, Cho;Soyoung, Choi;Kangmin, Seo;Ki Hyun, Kim;Jung-Hwan, Jeon;Chan Ho, Kim;Sejin, Lim;Sohee, Jeong;Ju Lan, Chun
    • Journal of Animal Science and Technology
    • /
    • v.64 no.5
    • /
    • pp.937-949
    • /
    • 2022
  • Health concern of dogs is the most important issue for pet owners. People who have companied the dogs long-term provide the utmost cares for their well-being and healthy life. Recently, it was revealed that the population and types of gut microbiota affect the metabolism and immunity of the host. However, there is little information on the gut microbiome of dogs. Hericium erinaceus (H. erinaceus; HE) is one of the well-known medicinal mushrooms and has multiple bioactive components including polyphenol, β-glucan, polysaccharides, ergothioneine, hericerin, erinacines, etc. Here we tested a pet food that contained H. erinaceus for improvement in the gut microbiota environment of aged dogs. A total of 18 dogs, each 11 years old, were utilized. For sixteen weeks, the dogs were fed with 0.4 g of H. erinaceus (HE-L), or 0.8 g (HE-H), or without H. erinaceus (CON) per body weight (kg) with daily diets (n = 6 per group). Taxonomic analysis was performed using metagenomics to investigate the difference in the gut microbiome. Resulting from principal coordinates analysis (PCoA) to confirm the distance difference between the groups, there was a significant difference between HE-H and CON due to weighted Unique fraction metric (Unifrac) distance (p = 0.047), but HE-L did not have a statistical difference compared to that of CON. Additionally, the result of Linear discriminate analysis of effect size (LEfSe) showed that phylum Bacteroidetes in HE-H and its order Bacteroidales increased, compared to that of CON, Additionally, phylum Firmicutes in HE-H, and its genera (Streptococcus, Tyzzerella) were reduced. Furthermore, at the family level, Campylobacteraceae and its genus Campylobacter in HE-H was decreased compared to that of CON. Summarily, our data demonstrated that the intake of H. erinaceus can regulate the gut microbial community in aged dogs, and an adequate supply of HE on pet diets would possibly improve immunity and anti-obesity on gut-microbiota in dogs.

Effects of Temperature and Salinity on the Growth and Paralytic Shellfish Toxin (PST) Production by Toxic Dinoflagellate Alexandrium pacificum (유독 와편모조류 Alexandrium pacificum의 생장과 마비성 패독 생산에 미치는 수온과 염분의 영향)

  • Li, PeiJin;Oh, Seok Jin;Kim, Seok-Yun
    • Journal of the Korean Society of Marine Environment & Safety
    • /
    • v.28 no.6
    • /
    • pp.866-873
    • /
    • 2022
  • Growth rate and production of the paralytic shellfish poisoning toxin (PST) of a toxic dinoflagellate Alexandrium pacificum (LIMS-PS-2611) isolated from the southern sea of Korea, were examined under various temperatures and salinity conditions. The maximum growth rate (0.28 day-1) was observed under 25℃ and 30 psu. Optimal growth (≥ 70% of maximum growth rate) was obtained between 20~25℃ and 25~35 psu. Among the PSTs of A. pacificum, the principal toxins were C1+2 and GTX5 in N-sulfocarbamoyl toxin group, and minor components were characterized as neoSTXs in the carbamate toxin group. Maximum toxin content was observed under 20℃ and 30 psu, and the toxin content increased with the increase of salinity. Low toxin contents were measured under the temperature and salinity conditions of the maximum growth rate. Therefore, the PSP of bivalve, which occurs at a temperature range of 20-25℃ in June, might have been derived from A. pacificum.

Anti-Termite Activity of Azadirachta excelsa Seed Kernel and Its Isolated Compound against Coptotermes curvignathus

  • Morina ADFA;Khafit WIRADIMAFAN;Ricky Febri PRATAMA;Angga SANJAYA;Deni Agus TRIAWAN;Salprima YUDHA S.;Masayuki NINOMIYA;Mohamad RAFI;Mamoru KOKETSU
    • Journal of the Korean Wood Science and Technology
    • /
    • v.51 no.3
    • /
    • pp.157-172
    • /
    • 2023
  • Azadirachta excelsa, is a plant belonging to the same genus as Indian neem (Azadirachta indica), and its use as a pesticide is reported by few studies. Despite being a different species, it is expected to have the same biopesticide potential as A. indica. Therefore, this study aims to investigate the anti-termite activity of n-hexane and methanol extracts of A. excelsa seed kernel at various concentrations against Coptotermes curvignathus. The methanol extract demonstrated greater termicidal activity than n-hexane at doses test of 2%, 4%, and 8%. It also showed 100% termite mortality on the third day of administering the 8% dose. According to the gas chromatography with mass spectrometry data, the putative main components of the n-hexane extract were hexadecanoic acid, ethyl ester (18.99%), 9,12-octadecadienoic acid (Z,Z)- (16.31%), and 9-octadecenal (16.23%). In contrast, the principal constituents of methanol extract were patchouli alcohol (28.1%), delta-guaiene (15.15%), and alpha-guaiene (11.93%). Furthermore, limonoids profiling of A. excelsa methanol extract was determined using Ultrahigh-performance liquid chromatography coupled with quadrupole-Orbitrap high-resolution mass spectrometry. The number of limonoids identified tentatively was fifteen, such as 6-deacetylnimbin, nimbolidin C, nimbolide, 6-acetylnimbandiol, 6-deacetyl-nimbinene, salannol, 28-deoxonimbolide, gedunin, nimbandiol, epoxyazadiradione, azadirone, 2',3'-dihydrosalannin, marrangin, nimbocinol, and azadirachtin. They were the same as those reported in the seed and leaves of A. indica, but its largest component in A. excelsa was 6-deacetylnimbin. As a result, the presence of these compounds may be responsible for the anti-termite activity of A. excelsa seed kernel extract. Additionally, column chromatography of methanol extract yielded 6-deacetylnimbin, which was found to be antifeedant and termiticide against C. curvignathus.

Estimation of 3-D Hydraulic Conductivity Tensor for a Cretaceous Granitic Rock Mass: A Case Study of the Gyeongsang Basin, Korea (경상분지 백악기 화강암 암반에 대한 삼차원 수리전도텐서 추정사례)

  • Um, Jeong-Gi;Lee, Dahye
    • The Journal of Engineering Geology
    • /
    • v.32 no.1
    • /
    • pp.41-57
    • /
    • 2022
  • A workflow is presented to estimate the size of a representative elementary volume and 3-D hydraulic conductivity tensor based on fluid flow analysis for a discrete fracture network (DFN). A case study is considered for a Cretaceous granitic rock mass at Gijang in Busan, Korea. The intensity and size of joints were calibrated using the first invariant of the fracture tensor for the 2-D DFN of the study area. Effective hydraulic apertures were obtained by analyzing the results of field packer tests. The representative elementary volume of the 2-D DFN was determined to be 20 m square by investigating the variations in the directional hydraulic conductivity for blocks of different sizes. The directional hydraulic conductivities calculated from the 2-D DFN exhibited strong anisotropy related to the hydraulic behavior of the study area. The 3-D hydraulic conductivity tensor for the fractured rock mass of the study area was estimated from the directional block conductivities of the 2-D DFN blocks generated for various directions in 3-D. The orientations of the principal components of the 3-D hydraulic conductivity tensor were found to be identical to those of delineated joint sets in the study area.

Monitoring of Groundwater quality according to groundwater use for agriculture (농업용 지하수 사용에 따른 지하수질 모니터링 평가)

  • Ha, Kyoochul;Ko, Kyung-Seok;Lee, Eunhee;Kim, Sunghyun;Park, Changhui;Kim, Gyoo-Bum
    • Proceedings of the Korea Water Resources Association Conference
    • /
    • 2020.06a
    • /
    • pp.30-30
    • /
    • 2020
  • 본 연구에서는 여름철에 농업용수(벼농사용)로서 집중적으로 지하수를 사용하는 지역에서 시기별 지하수 사용에 따른 지하수 수질변화를 평가하기 위해 수행되었다. 연구지역은 충남 홍성군 양곡리와 신곡리 일부를 포함하는 면적 2.83 ㎢(283.3 ha)에 해당하는 지역이다. 연구지역 지하수 수질의 공간적 분포 및 시간적 변화 특성 평가를 위하여 2019년 2회(7월, 10월)에 걸쳐 지하수 관정(21개소)에 대하여 조사 및 분석을 수행하였다. 지하수 샘플은 현장에서 온도(T), pH, 용존산소(DO) 및 전기전도도(EC), 산화환원전위(Eh) 등을 측정하였고, 실험실에서 주요 양이온 및 미량원소(Ca, Mg, Na, K, Si, Sr), 음이온(F, Cl, Br, NO2, NO3, PO4, SO4), 알칼리도, 용존 유기탄소(DOC)와 용존 유기물(DOM) 등을 분석하였다. 지하수 수질조사 결과, 전체의 14~15개소(67~71%)가 Ca-HCO3 유형으로 분류되었으며, 다음으로는 Ca-Cl 유형이 4~5개소(19~24%)가 관찰되었다. 얕은 심도의 관정에서 상대적으로 심도가 깊은 관정보다 대부분 성분(TDS, Ca, Mg, Na, K, Cl, SO4, HCO3, DOC)에서 높은 농도를 나타내었다. 지하수의 수질자료를 이용하여 다변량통계분석법인 주성분분석(PCA: Principal Components Analysis)과 계층적 군집분석(HCA: Hierachical Cluster Anlaysis)를 수행한 결과, 초기 3개 주요 고유성분(eigenvalue)는 PC1 54.0%, PC2 14.2%, PC3 12.3%로 전체 분산의 88.3%를 설명할 수 있었다. PC1은 Ca, Mg, Na, K, Cl, SO4, DOC가 주요한 영향 인자였으며 PC2는 HCO3, NO3, DO에 영향 받음을 확인하였다. 계층적 군집분석 결과, 연구지역 지하수는 Na-Cl 유형의 C-3 관정을 제외하고는 크게 두 그룹으로 구분되어 졌다. 다변량통계분석의 결과에서도 수리지화학, 동위원소, 용존유기물 등의 특성에서 나타나는 것과 유사한 연구지역의 수질특성을 확인할 수 있었다. 연구지역은 차시기 동안 수질변화는 일부 관정을 제외하고는 유의할 만한 수준으로 관찰되지는 않았고, 지하수 사용에 따른 지하수위 회복도 빠르게 진행되고 있는 것으로 나타났다.

  • PDF