• KSII Transactions on Internet and Information Systems (TIIS)
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• v.14 no.8
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• pp.3295-3311
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• 2020

With the wide application of hyperspectral images, it becomes more and more important to compress hyperspectral images. Conventional recursive least squares (CRLS) algorithm has great potentiality in lossless compression for hyperspectral images. The prediction accuracy of CRLS is closely related to the correlations between the reference bands and the current band, and the similarity between pixels in prediction context. According to this characteristic, we present an improved CRLS with adaptive band selection and adaptive predictor selection (CRLS-ABS-APS). Firstly, a spectral vector correlation coefficient-based k-means clustering algorithm is employed to generate clustering map. Afterwards, an adaptive band selection strategy based on inter-spectral correlation coefficient is adopted to select the reference bands for each band. Then, an adaptive predictor selection strategy based on clustering map is adopted to select the optimal CRLS predictor for each pixel. In addition, a double snake scan mode is used to further improve the similarity of prediction context, and a recursive average estimation method is used to accelerate the local average calculation. Finally, the prediction residuals are entropy encoded by arithmetic encoder. Experiments on the Airborne Visible Infrared Imaging Spectrometer (AVIRIS) 2006 data set show that the CRLS-ABS-APS achieves average bit rates of 3.28 bpp, 5.55 bpp and 2.39 bpp on the three subsets, respectively. The results indicate that the CRLS-ABS-APS effectively improves the compression effect with lower computation complexity, and outperforms to the current state-of-the-art methods.

• Genomics & Informatics
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• v.19 no.1
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• pp.10.1-10.7
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• 2021

Although many models have been proposed to accurately predict the response of drugs in cell lines recent years, understanding the genome related to drug response is also the key for completing oncology precision medicine. In this paper, based on the cancer cell line gene expression and the drug response data, we established a reliable and accurate drug response prediction model and found predictor genes for some drugs of interest. To this end, we first performed pre-selection of genes based on the Pearson correlation coefficient and then used ElasticNet regression model for drug response prediction and fine gene selection. To find more reliable set of predictor genes, we performed regression twice for each drug, one with IC₅₀ and the other with area under the curve (AUC) (or activity area). For the 12 drugs we tested, the predictive performance in terms of Pearson correlation coefficient exceeded 0.6 and the highest one was 17-AAG for which Pearson correlation coefficient was 0.811 for IC₅₀ and 0.81 for AUC. We identify common predictor genes for IC₅₀ and AUC, with which the performance was similar to those with genes separately found for IC₅₀ and AUC, but with much smaller number of predictor genes. By using only common predictor genes, the highest performance was AZD6244 (0.8016 for IC₅₀, 0.7945 for AUC) with 321 predictor genes.

• Journal of the Korean Statistical Society
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• v.29 no.4
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• pp.407-422
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• 2000

This article is concerned with the selecting predictor variables to be included in building a class of binary response t-link regression models where both probit and logistic regression models can e approximately taken as members of the class. It is based on a modification of the stochastic search variable selection method(SSVS), intended to propose and develop a Bayesian procedure that used probabilistic considerations for selecting promising subsets of predictor variables. The procedure reformulates the binary response t-link regression setup in a hierarchical truncated normal mixture model by introducing a set of hyperparameters that will be used to identify subset choices. In this setup, the most promising subset of predictors can be identified as that with highest posterior probability in the marginal posterior distribution of the hyperparameters. To highlight the merit of the procedure, an illustrative numerical example is given.

• Journal of the Korean Statistical Society
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• v.28 no.2
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• pp.167-182
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• 1999

This article is concerned with the selection of subsets of predictor variables to be included in building the binary response probit regression model. It is based on a Bayesian approach, intended to propose and develop a procedure that uses probabilistic considerations for selecting promising subsets. This procedure reformulates the probit regression setup in a hierarchical normal mixture model by introducing a set of hyperparameters that will be used to identify subset choices. The appropriate posterior probability of each subset of predictor variables is obtained through the Gibbs sampler, which samples indirectly from the multinomial posterior distribution on the set of possible subset choices. Thus, in this procedure, the most promising subset of predictors can be identified as the one with highest posterior probability. To highlight the merit of this procedure a couple of illustrative numerical examples are given.

• Journal of Korea Society of Digital Industry and Information Management
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• v.5 no.3
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• pp.141-145
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• 2009

In this paper, we propose an efficient lossless compression algorithm using spatial and temporal information. The proposed method obtains higher lossless compression of images than other lossless compression techniques. It is divided into two parts, a motion adaptation based predictor part and a residual error coding part. The proposed nonlinear predictor can reduce prediction error by learning from its past prediction errors. The predictor decides the proper selection of the spatial and temporal prediction values according to each past prediction error. The reduced error is coded by existing context coding method. Experimental results show that the proposed algorithm has better performance than those of existing context modeling methods.

• Proceedings of the Korean Statistical Society Conference
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• 2004.11a
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• pp.195-198
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• 2004

One Important problem in a cancer microarray study is to identify a set of genes from which a molecular prognostic indicator can be developed. In parallel with this problem is to validate the chosen set of genes. We develop in this note a K-fold cross validation procedure by combining a 'pre-validation' technique and a bootstrap resampling procedure in the Cox regression . The pre-validation technique predicts the microarray predictor of a case without having seen the true class level of the case. It was suggested by Tibshirani and Efron (2002) to avoid the possible over-fitting in the regression in which a microarray based predictor is employed. The bootstrap resampling procedure for the Cox regression was proposed by Sauerbrei and Schumacher (1992) as a means of overcoming the instability of a stepwise selection procedure. We apply this K-fold cross validation to the microarray data of 92 gastric cancers of which the experiment was conducted at Cancer Metastasis Research Center, Yonsei University. We also share some of our experience on the 'false positive' result due to the information leak.

• Communications for Statistical Applications and Methods
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• v.10 no.3
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• pp.627-635
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• 2003

In this short communication we discuss the bias problem of C4.5 in split variable selection and suggest a method to reduce the variable selection bias among categorical predictor variables. A penalty proportional to the number of categories is applied to the splitting criterion gain of C4.5. The results of empirical comparisons show that the proposed modification of C4.5 reduces the size of classification trees.

• Journal of applied mathematics & informatics
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• v.9 no.2
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• pp.807-815
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• 2002

We consider a more general linear regression super-population model than the one of Chaudhuri and Stronger(1992) . We can find the same type of the best linear unbiased(BLU) predictor as that of Chaudhuri and Stenger and see that the optimal design is again a purposive one which prescribes choosing one of the samples of size n which has $\chi$ closest to $\bar{X}$.

• Journal of Korean Society for Quality Management
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• v.26 no.1
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• pp.143-160
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• 1998

This article is concerned with the selection of subsets of predictor variables to be included in bulding the binary response logistic regression model. It is based on a Bayesian aproach, intended to propose and develop a procedure that uses probabilistic considerations for selecting promising subsets. This procedure reformulates the logistic regression setup in a hierarchical normal mixture model by introducing a set of hyperparameters that will be used to identify subset choices. It is done by use of the fact that cdf of logistic distribution is a, pp.oximately equivalent to that of $t_{(8)}$/.634 distribution. The a, pp.opriate posterior probability of each subset of predictor variables is obtained by the Gibbs sampler, which samples indirectly from the multinomial posterior distribution on the set of possible subset choices. Thus, in this procedure, the most promising subset of predictors can be identified as that with highest posterior probability. To highlight the merit of this procedure a couple of illustrative numerical examples are given.

• Asian-Australasian Journal of Animal Sciences
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• v.20 no.3
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• pp.453-460
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• 2007

An overview of developments important in the future of animal breeding is discussed. Examples from the application of quantitative genetic principles to selection in chickens and mice are given. Lessons to be learned from these species are that selection for production traits in livestock must also consider selection for reproduction and other fitness-related traits and inbreeding should be minimized. Short-term selection benefits of best linear unbiased predictor methodology must be weighed against long-term risks of increased rate of inbreeding. Different options have been developed to minimize inbreeding rates while maximizing selection response. Development of molecular genetic methods to search for quantitative trait loci provides the opportunity for incorporating marker-assisted selection and introgression as new tools for increasing efficiency of genetic improvement. Theoretical and computer simulation studies indicate that these methods hold great promise once genotyping costs are reduced to make the technology economically feasible. Cloning and transgenesis are not likely to contribute significantly to genetic improvement of livestock production in the near future.