• Title/Summary/Keyword: Population structure

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Population Structure of Minke Whales (Balaenoptera acutorostrata) in the Korean Waters Based upon Mitochondrial DNA Polymorphism

  • Park, Jung-Youn;Kim, Mi-Jung;An, Yong-Rock;Kim, Zang-Kun;An, Hye-Suck;Moon, Hyo-Bang;Kim, Kyung-Kil;Sohn, Haw-Sun
    • Animal cells and systems
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    • v.13 no.4
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    • pp.419-427
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    • 2009
  • The Minke whale, Balaenoptera acutorostrata, is the smallest baleen whale in the suborder Mysticeti. Because this species inhabits coastal areas, it became a main target species of coastal small-type whaling in the North Atlantic and the Northwest Pacific Oceans, and the species' population size dramatically decreased because of over-exploitation. As a result, the International Whaling Commission declared a global moratorium on whaling and launched the development of a management procedure for protecting the whales. Morphological studies, whaling history analysis, and genetic studies conducted mainly by Japanese scientists showed the existence of one unique "E" stock that inhabits the waters around the Korean peninsula and mixes with the "O" stock in the southern part of the Sea of Okhotsk. We used the mitochondrial DNA control region polymorphism of 348 Minke whales bycaught or stranded in Korean waters from 30 October 1998 to 25 June 2005 to assess the whale population structure by year. The frequency of the 10 major haplotypes from the 40 identified haplotypes was not significantly different among groups, suggesting that a subpopulation was not present. A comparison of the genetic distances calculated with Tamura-Nei's method showed that the distances between groups were lower than those within groups, which suggests that there was no genetic difference in the Minke whale populations. The Fst comparison between groups and the phylogenetic tree constructed using the unweighted pair group method with arithmetic mean (UPGMA) and Neighbor Joining (NJ) method also detected no obvious sub-stock structure.

Development of SSR Markers and Their Use in Studying Genetic Diversity and Population of Finger Millet (Eleusine coracana L. Gaertn.)

  • Lee, Kyung Jun;Yoon, Mun-Sup;Shin, Myoung-Jae;Lee, Jung-Ro;Cho, Yang-Hee;Lee, Ho-Sun;Ma, Kyung-Ho;Lee, Gi-An
    • Plant Breeding and Biotechnology
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    • v.5 no.3
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    • pp.183-191
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    • 2017
  • Finger millet (Eleusine coracana L. Gaertn.) is an important cereal crop in eastern Africa and southern India with excellent grain storage capacity and the unique ability to thrive in extreme environmental conditions. In this study, we analyzed the genetic diversity and population structure of finger millet using 12 developed microsatellites. By sequencing 815 clones from an SSR-enriched genomic DNA library, we obtained 12 polymorphic SSR markers, which also revealed successful amplicons in finger millet accessions. Using the developed SSR markers, we estimated genetic diversity and population structure among 76 finger millet accessions in Asia, Africa, and unknown origins. The number of alleles ranged from 2 to 9, with an average of 3.3 alleles. The mean values of observed heterozygosity and expected heterozygosity were 0.27 and 0.35, respectively. The average polymorphism information content was 0.301 in all 76 finger millet accessions. AMOVA analysis showed that the percentage of molecular variance among the populations was 1%, that among individuals was 5%, and that within individuals was 94%. In STRUCTURE analysis, the 76 finger millet accessions were divided into two subpopulations which had an admixture of alleles. There was a correspondence among PCoA, AMOVA, and population structure. This study may form the basis for a finger millet breeding and improvement program.

Tree Diversity, Population Structure, Regeneration and Conservation Status in Sacred Groves of Jhargram District, South-West Bengal, India

  • Sen, Uday Kumar;Bhakat, Ram Kumar
    • Journal of Forest and Environmental Science
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    • v.37 no.3
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    • pp.169-192
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    • 2021
  • Sacred groves are large areas of virgin or human-modified landscape with a diverse range of species that have been protected by local people for centuries due to cultural, religious beliefs, and taboo that the deities live in them and protect the villagers from various calamities. The present study was carried out for quantitative analysis of diversity, population structure, regeneration and conservation status of tree species in the four 36.86 ha sacred groves of Jhargram district in West Bengal. Tree species composition, population structure and regeneration status were analyzed by randomly establishing of 1 ha subplots within the sacred groves. Density, frequency, basal area, abundance, evenness, and other diversity indices were calculated for adult trees with girth at breast height (GBH) >31 cm. A total of 146 tree species belonging to 116 genera distributed in 44 families from 21 orders were recorded. Pterospermum suberifolium, family Malvaceae showed the highest Species Importance Value Index (SIVI, 21.33) and Fabaceae showed the highest Family Importance Value Index (FIVI, 35.59) values respectively. Individuals are categorised into three groups, seedling, sapling and adult based on girth classes. The majority of tree species exhibited good (52.74%) regeneration followed by fairly (24.66%), poor (15.75%) and no regeneration (6.85%) respectively. With the healthy existence of the sacred grove, the overall population structure of tree species showed a strong regeneration potential. The current data will be useful in determining the current status of tree species and will be used by the forest department, politicians, and conservationists to establish management plans for the conservation of priority species in the region. Since the study areas were sacred groves, tribal members were keen to preserve them due to their religious significance.

Evaluation of Genetic Diversity and Population Structure Analysis among Germplasm of Agaricus bisporus by SSR Markers

  • An, Hyejin;Lee, Hwa-Yong;Shin, Hyeran;Bang, Jun Hyoung;Han, Seahee;Oh, Youn-Lee;Jang, Kab-Yeul;Cho, Hyunwoo;Hyun, Tae Kyung;Sung, Jwakyung;So, Yoon-Sup;Jo, Ick-Hyun;Chung, Jong-Wook
    • Mycobiology
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    • v.49 no.4
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    • pp.376-384
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    • 2021
  • Agaricus bisporus is a popular edible mushroom that is cultivated worldwide. Due to its secondary homothallic nature, cultivated A. bisporus strains have low genetic diversity, and breeding novel strains is challenging. The aim of this study was to investigate the genetic diversity and population structure of globally collected A. bisporus strains using simple sequence repeat (SSR) markers. Agaricus bisporus strains were divided based on genetic distance-based groups and model-based subpopulations. The major allele frequency (MAF), number of genotypes (NG), number of alleles (NA), observed heterozygosity (HO), expected heterozygosity (HE), and polymorphic information content (PIC) were calculated, and genetic distance, population structure, genetic differentiation, and Hardy-Weinberg equilibrium (HWE) were assessed. Strains were divided into two groups by distance-based analysis and into three subpopulations by model-based analysis. Strains in subpopulations POP A and POP B were included in Group I, and strains in subpopulation POP C were included in Group II. Genetic differentiation between strains was 99%. Marker AB-gSSR-1057 in Group II and subpopulation POP C was confirmed to be in HWE. These results will enhance A. bisporus breeding programs and support the protection of genetic resources.

Seasonal Variations in Distribution, Population Structure and Prosome Length of Calanus sinicus (Copepoda: Calanoida) in the Southern Waters of Korea

  • Kang, Young-Shil;Hong, Sung-Yun
    • Journal of the korean society of oceanography
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    • v.33 no.1-2
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    • pp.28-34
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    • 1998
  • Variations in abundance, size and population structure of Calanus sinicus were studied in the southern waters of Korea in connection with hydrographic conditions during 1991-1992. Abundance was high in April and low in August. This species was concentrated inshore of a coastal temperature front, or around the temperature front in April. The 1st-3rd copepodites dominated in February and April, and adults in August. The mean population stages in February and April were younger than those in other survey months. This suggests that this species mainly reproduced during winter-early spring. In prosome length, the 1st-4th copepodites were larger in April than in other survey months, and the 5th copepodite and adult were the largest in February. Mean prosome length of C. sinicus showed weak inverse relationship with sea water temperature, but it was not statistically evidenced.

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Multilocus Genotyping to Study Population Structure in Three Buffalo Populations of India

  • Tantia, M.S.;Vijh, R.K.;Mishra, Bina;Kumar, S.T. Bharani;Arora, Reena
    • Asian-Australasian Journal of Animal Sciences
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    • v.19 no.8
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    • pp.1071-1078
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    • 2006
  • Three buffalo populations viz. Bhadawari, Tarai and local buffaloes of Kerala were genotyped using 24 heterologous polymorphic microsatellite loci. A total of 140 alleles were observed with an average observed heterozygosity of 0.63. All the loci were neutral and 18 out of the 24 loci were in Hardy Weinberg Equilibrium. The $F_{IS}$ values (estimate of inbreeding) for 16 loci in all the three populations were negative. This indicated lack of population structure in the three populations. The effective number of immigrants was 5.88 per generation between the Tarai and Bhadawari populations which was quite high suggesting substantial gene flow. The genetic distances revealed closeness between the Tarai and Bhadawari populations which was expected from geographical contiguity. The FST values were not significantly different from zero showing no population differentiation. The Correspondence Analysis based on the allelic frequency data clustered the majority of the Tarai and Bhadawari individuals as an admixture.

An Improved Model of the Organizational Structure for National University Libraries in Korea (대학도서관 조직구조의 개선모형연구)

  • Yun Hee-Yun
    • Journal of the Korean Society for Library and Information Science
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    • v.22
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    • pp.397-441
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    • 1992
  • This study aims to present an improved model of the organizational structure for national university libraries in Korea. The results of this study are as follows : 1. A small scale library serving to a population of less than 15,000 should be organized with a staff of 50-60 persons, 3 departments and 10-13 sections (3 departments and 9-12 sections of central library + 1 section of branch library) 2. A medium scale library serving to 15,000-25,000 population should be organized with a staff of 80-120 persons, an associate librarian, 5-6 departments and 18-21 sections (4-5 departments and 15-18 sections of central library + 1 department and 3 sections of branch library) 3. A large scale library serving to a population of over 25,000 should be organized with a staff of 140-170 persons, an associate librarian, 7-8 departments and 25-28 sections (5-6 department and 20-21 sections of central library + 2 departments and 6 sections of branch libraries)

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Immigration to Korea: A Fiscal Boon or Burden?

  • HUR, JINWOOK
    • KDI Journal of Economic Policy
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    • v.42 no.4
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    • pp.27-58
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    • 2020
  • This paper intends to examine the extent of the fiscal contribution of immigrants to Korea. According to this analysis, the aim is to derive implications pertaining to the direction of Korea's immigration policy as a response to fiscal problems caused by population aging. For this purpose, a macroeconomic model is designed to measure the lifetime net fiscal contribution of immigrants in Korea by visa type, age, and other characteristics. According to this analysis, the sum of the lifetime fiscal contribution for all immigrants in Korea is negative. This implies that immigration policy reforms that increase the inflow size while maintaining the current structure of the foreign population characteristics can rather worsen Korea's fiscal problems. This finding suggests that immigration policy reform may exacerbate Korea's fiscal soundness if it simply targets the maintenance of the numerical balance of the demographic structure.

Recent Changes of the Ethnic Korean Population in Yanbian Autonomous Prefecture: A Socio-demographic Approach (연변 조선족사회의 최근 변화: 사회인구학적 접근)

  • Kim Doo-Sub
    • Korea journal of population studies
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    • v.26 no.2
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    • pp.111-145
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    • 2003
  • This paper attempts to explore recent socio-demographic changes of the ethnic Korean population in Yanbian autonomous prefecture. Due to rapid decrease in the level of fertility and population ageing, Korean minority society in China has been in a process of profound transition after the introduction of the market economy and establishment of diplomatic relations between South Korea and China. The changes in demographic behaviors and in the structure of population appear to be much faster among Koreans than Hans. Results from the 2000 population census reveal that the Korean population in Yanbian, where ethnic Koreans are most densely populated in China, has been in a decreasing trends in absolute numbers and in its proportion to the total population. The growing tendency of regional mobility for work and for marriage, rapid expansion of residential areas, serious crisis of ethnic schools of Korean community, and weakening social integration and ethnic identification of Koreans in Yanbian are discussed in this study. It is expected that socio-demographic transition of Korean society in Yanbian will be even more drastic over the coming decades. The rapid changes in demographic behaviors and in the structure of population has major consequences and implications for every sphere of human life, and will present enormous challenges for the status of Korean minority society in China. Along with various statistical data on Yanbian, micro-level data as well as published reports from the 1990 Chinese population census for Yanbian and the 2000 Chinese population census are analyzed in this study. In addition to sex ratios and age ratios, various indices are calculated to analyze the characteristics and accuracy of the data from the 1990 and 2000 population censuses of China.

Analysis of City Size Distribution and Spatial Structure - with Korean Metroplitan Statistical Areas (MSA) (한국 도시의 규모분포와 도시공간구조 분석 - 광역도시통계권을 중심으로)

  • Kim, Dong-Soo;Huh, Mun-Gu;Lee, Doo-Hee
    • Journal of the Economic Geographical Society of Korea
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    • v.11 no.4
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    • pp.549-563
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    • 2008
  • The purpose of this research is to identify the urban structure in Korea. Though there is research regarding urbanization, there is little regarding the urban structure of the Korean economy. In this paper, two issues will be discussed: the measurements of inter-city and intra-city structure in Korean Metropolitan Statistical Areas (MSAs), which is newly defined. First, the city size rank rule, widely known as Zipf’s Law, will illustrate Korean the inter-city structure. The city size rank rule gives an idea whether Korean MSAs are balanced or not. In general, Korea has a heavy concentration in the Seoul MSA in terms of population. It could be either that the Seoul MSA is too big or that the Busan MSA is too small or both. If this is the primacy problem, a decentralization policy is necessary. On the other hand, if it is a second city problem, development policies for the Busan MSA and Daegu MSA are more important. Next, the Korean intra-city structure will be discussed. The evolutions of the MSAs explain intra-city structure by analyzing population density function and the housing price function. Some large MSAs such as Seoul and Busan have experienced urban sprawl, while other MSAs have experienced urban concentration. The population density gradient by the distance from the ARC GIS shows the growth rate of a city. According to the Spatial Mismatch Index between population and employment, the Ulsan MSA, Gwangju MSA, and Suwon-Hwaseong-Osan MSA are more mismatched, while the Daejeon MSA and Incheon MSA are less mismatched. Therefore, these analyses of Korean urban structure are meaningful in developing regional policy.

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