• Interdisciplinary Bio Central
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• 제3권4호
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• pp.15.1-15.11
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• 2011

Background: Histone deacetylase (HDAC) 8 is one of its family members catalyzes the removal of acetyl groups from N-terminal lysine residues of histone proteins thereby restricts transcription factors from being expressed. Inhibition of HDAC8 has become an emerging and effective anti-cancer therapy for various cancers. Application computational methodologies may result in identifying the key components that can be used in developing future potent HDAC8 inhibitors. Results: Facilitating the discovery of novel and potential chemical scaffolds as starting points in the future HDAC8 inhibitor design, quantitative structure-activity relationship models were generated with 30 training set compounds using genetic function approximation (GFA) and Bayesian algorithms. Six GFA models were selected based on the significant statistical parameters calculated during model development. A Bayesian model using fingerprints was developed with a receiver operating characteristic curve cross-validation value of 0.902. An external test set of 54 diverse compounds was used in validating the models. Conclusions: Finally two out of six models based on their predictive ability over the test set compounds were selected as final GFA models. The Bayesian model has displayed a high classifying ability with the same test set compounds and the positively and negatively contributing molecular fingerprints were also unveiled by the model. The effectively contributing physicochemical properties and molecular fingerprints from a set of known HDAC8 inhibitors were identified and can be used in designing future HDAC8 inhibitors.

• 수산해양교육연구
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• 제28권6호
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• pp.1662-1672
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• 2016

To address physicochemical factors of yellow clay for removing Cochlodinium polykrikoides blooms, the correlation of removal efficiency with mineralogical characteristics of yellow clay collected from various areas was surveyed. Yellow clay from different localities showed the wide range of chemical compositions $SiO_2$ : 43~71%, $Al_2O_3$ : 13~26%, $Fe_2O_3$ : 5~14%, MgO : 0.4~1.8%, $K_2O$ : 0.6~3.3%, L.O.I.(Loss of Ignition) : 4.5~15%. The mineral compositions of yellow clay were mainly consisted of quartz and feldspar including small amounts of kaolinite, chlorite, and Fe-oxides. The result of size analysis showed that $6{\Phi}(31{\sim}16{\mu}m)$ and $7{\Phi}(16{\sim}8{\mu}m)$ were dominated sizes. The zeta-potential were in the range of -4.1~-20.7mV(average -13.7). As increasing removal efficiency of C. polykrikoides, contents of $Al_2O_3$, $Fe_2O_3$ and L.O.I. in yellow clay increased, whereas $SiO_2$ content decreased. Furthermore, the amounts of silt mineral and small particle were high when the removal efficiency was high. According to factor analysis using principle component analysis, two components of factor 1 and factor 2 showed 79% of the total variance, which is related to cohesion and adsorption. Inducing cell lysis of C. polykrikoides by cohension and adsorption between C. polykrikoides and yellow clay.

• The Korean Journal of Ecology
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• 제21권5_3호
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• pp.703-712
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• 1998

Physicochemical factors, microbial population size and the properties of the bacterial isolates were estimated to find out the nature of soil ecosystem of Mt. Nam. Samples were obtained from the surface layer of soils on which specific plant community is developed. Average content of moisture and organic matter of the soils were 21.6% and 17.3%, respectively. These values were similar to those of developing forest soils, but were slightly lower than those of climax ecosystem such as Piagol in Mt. Chiri. Chiri. Content of phosphate was higher than those of other forest soils. The population size of soil bacteria ranged from 27.4 to 195.8 ${\times}\;10^5$ CFU/g. duy soil, and the size is somewhat dependent on the moisture and oranic matter content of soils. A large number of bacteria were able to decompose macromolecules such as starch, elastin and gelatin. Bacterial species composition of each soil was comparatively simple. Pseudomonas, Agrobacterium, Flavobacterium and Xanthomonas which are Gram-negative short rods were widely distributed in the forest soils. The endospore forming Bacillus species were also the main constituents of the soil microflroa. Actinomycetes were widely distributed in the forest soils, but the distribution pattern varied in each site. Most of the actinomycetes were also able to decompose organic macromolecules. The rate of resistant actinomycete strains to antibiotics and heavy metals were lower than those from cultivated soils, but higher than those from well-preserved forest soils. Antibiosis pattern of the actinomycete isolates was similiar to the resistance pattern. This means the forest soils of Mt. nam was somewhat interferred by artificial behabiour.

• The Korean Journal of Ecology
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• 제21권5_2호
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• pp.575-583
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• 1998

Physicochemical factors, microbial population size and the properties of the bacterial isolates were assessed to find out the nature of soil ecosystem of Mt. Paektu. Samples were obtained from the surface layer of soils on which specific plant community is developed. Average content of moisture, organic matter and avaiable phosphate of the soils were 21.6%, 17.3% and 2.48mg/100g, respectively. These values were similar to those of developing forest soils, but were slightly lower than those of climax ecosystem such as Piagol in Mt. Chiri. The population size of soil bacteria ranged from 2.7 to $202.5{\times}10^5$ CFU/g.dry soil, and the size is somewhat dependent on the content of moisture and oranic matter of the forest soil. A large number of bacteria was able to decompose macromolecules such as starch, elastin and gelatin. While the distribution rate of resistant bacteria to antibiotics was high, that to toxic chemicals was low. This means that the competition between microorgani는 predominate over the interference with artificial behaviour such as spread of pesticides in the surveyed region. Bacterial species composition of each soil was comparatively simple. Pseudomonas, Agrobacterium, Flavobacterium and Xanthomonas which are Gram-negative short rods were widely distributed in the forest soils. The endospore forming Bacillus species were also main constituents of the soil microflroa. any one of the strains was not identified as Azospirillum or Micrococcus which are known to be one of major constituents of the forest soil. for the correct identification of isolates chemotaxonomic studies will be proceeded, and the strains are to be stored in the Type collection Center.

• Journal of Microbiology and Biotechnology
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• 제18권7호
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• pp.1278-1285
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• 2008

The intestinal epithelial cell (IEC) layer of the intestinal tract makes direct contact with a number of microbiota communities, including bacteria known to have deleterious health effects. IECs possess innate protective strategies against pathogenic challenge, which primarily involve the formation of a physicochemical barrier. Intestinal tract mucins are principal components of the mucus layer on epithelial surfaces, and perform a protective function against microbial damage. However, little is currently known regarding the interactions between probiotics/pathogens and epithelial cell mucins. The principal objective of this study was to determine the effects of Lactobacillus on the upregulation of MUC2 mucin and the subsequent inhibition of E. coli O157:H7 attachment to epithelial cells. In the current study, the attachment of E. coli O157:H7 to HT-29 intestinal epithelial cells was inhibited significantly by L. acidophilus A4 and its cell extracts. It is also important to note that the expression of MUC2 mucin was increased as the result of the addition of L. acidophilus A4 cell extracts (10.0 mg/ml), which also induced a significant reduction in the degree to which E. coli O157:H7 attached to epithelial cells. In addition, the mRNA levels of IL-8, IL-1$\beta$, and TNF-$\alpha$ in HT-29 cells were significantly induced by treatment with L. acidophilus A4 extracts. These results indicate that MUC2 mucin and cytokines are important regulatory factors in the immune systems of the gut, and that selected lactobacilli may be able to induce the upregulation of MUC2 mucin and specific cytokines, thereby inhibiting the attachment of E. coli O157:H7.

• 한국미생물·생명공학회지
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• 제48권2호
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• pp.99-112
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• 2020

유류 오염 토양을 환경친화적으로 정화하는 방법으로 식물과 근권미생물 사이의 생태적 상승작용(synergism)에 기반을 둔 rhizoremediation이 큰 주목을 받고 있다. 전지구적 문제인 기후변화에 대응하기 위해서는 오염 토양을 정화하는 과정에서 온실가스 배출량을 최소화할 수 있는 기후변화 대응 정화기술이 도입될 필요가 있다. 기후변화 대응 rhizoremediation 기술에서, 오염정화효율과 non-CO₂ 온실 가스 배출량에 영향을 미치는 주요인자는 오염물질 특성 및 토양의 물리화학적 특성 뿐 아니라, 식물-미생물 상호작용, 미생물 활성, 그리고 첨가제 및 강화제 첨가 여부로 구분할 수 있다. 본 총설에서는 유류 오염토양을 정화하기 위한 rhizoremediation 기술 개발 동향을 정리하고, 기후변화 대응 rhizoremediation 기술 개발 방향에 대해 고찰하였다.

• 방사성폐기물학회지
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• 제8권2호
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• pp.143-150
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• 2010

가압경수로 원전의 농축폐액건조설비에서 발생된 농축폐액 건조물을 유리화 하는 방안이 연구되어 왔다. 중저준위 방사성폐기물을 유리화할 경우 최종 생성물은 내구성이 우수하고 현저한 부피저감 효과의 장점을 가지고 있다. 붕산농축폐액에 대한 유리화 타당성 연구는 분말시료의 전처리 방법 개발, 유리조성 프로그램을 이용한 유리개발 및 실증시험으로 수행되었다. 분말시료에 대한 전처리 방안으로는 유리화설비에 투입하기 전에 고형성을 갖도록 펠렛화하는 것이다. 농축폐액 성분중 Na와 B의 함량 분포는 유리속에 용융되는 정도와 설비로부터의 폐기물 배출 처리에 영향을 주기 때문에 이를 고려하여 유리조성이 개발되어야 한다. 실증시험에서는 폐기물 투입률, 배기체 특성 및 최종 생성물인 유리고화체의 특성이 검토되었다. 본 연구는 붕산농축폐액에 대한 유리고화체의 물리화학적 특성을 검토하고 유리화 타당성을 확인하는데 목적이 있다.

• 한국식생활문화학회지
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• 제11권3호
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• pp.339-348
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• 1996

Physicochemical and sensory characteristics of Korean traditional alcoholic beverages, such as Kwahaju, Sokokju, Baikhaju, Samhaeju and Hosanchun were investigated during fermentation with the difference of input step and treatment of rice and Nuruk (Korean-style bran koji). pH values in all treatments were similar to be ranged $3.1{\sim}3.2$, but acidity of the treatment brewed without seed mash was $1.5{\sim}2$ times higher than that of the treatment brewed with seed mash. The concentration of alcohol in all treatments increased as the concentration of the Nuruk increased. The alcohol concentrations of Samhaeju and Hosanchun ranging from 6.5% to 7.7% were higher than those of Kwahaju, Sokokju and Baikhaju ranging from 7.9% to 10.6%. Residual reducing sugar contents of Kwahaju, Sokokju and Baikhaju ranging from 4.6 g/L to 9.7 g/L were lower than those of Samhaeju and Hosanchun ranging from 14.2 g/L to 15.5 g/L. The consumed total sugar contents of Kwahaju, Sokokju and Baikhaju ranging from 125.4 g/L to 159.2 g/L were higher than those of Samhaeju and Hosanchun ranging from 111.2 g/L to 123.8 g/L, and the treatments brewed with seed mash showed more sugar consumption than the treatments brewed without seed mash. Sensory quality in the treatments brewed with seed mash was better than those of without seed mash. Concentration of Nuruk and preparation of seed mash from it were critical factors compared to input step and treatment of rice in Korean traditional alcoholic beverage brewing.

• 한국지하수토양환경학회지:지하수토양환경
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• 제19권6호
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• pp.13-17
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• 2014

Subcritical water acts like an organic solvent at elevated temperature in terms of its physicochemical properties. Taking into account this advantage, the remediation experiments of benzo[a]pyrene contaminated soil (8.45 mg/kg of initial concentration) were conducted using subcritical water extraction apparatus. The effect of operating factors on the removal efficiency was studied at the varying the conditions of the water temperature ranging $200{\sim}300^{\circ}C$, extraction time 30~90 min, and flow rate 0.3~2.0 mL/min. 12 g of benzo[a]pyrene contaminated soil was inserted into the extraction cell and placed into the reactor and then the subcritical water was driven through the cell. In this study, the removal efficiency of benzo[a]pyrene was increased from 55.1 to 98.1% when the temperature increased from 200 to $300^{\circ}C$. The removal efficiency was decreased from 97.0 to 77.0% when the flow rate increased from 0.3 to 2.0 mL/min, suggesting that the extraction is limited by intra-particle diffusion. The 30 min reaction time was determined as an effective treatment time at $250^{\circ}C$. Based on the results, the optimum condition for the remediation of benzo[a]pyrene contaminated soil was suggested to be $250^{\circ}C$, 30 min, and 0.3 mL/min.

• Journal of Ginseng Research
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• 제43권2호
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• pp.261-271
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• 2019

Background: Protopanaxatriol (PPT) is an aglycone of ginsenosides, which has high medicinal values. Production of PPT from natural ginseng plants requires artificial deglycosylation procedures of ginsenosides via enzymatic or physicochemical treatments. Metabolic engineering could be an efficient technology for production of ginsenoside sapogenin. For PPT biosynthesis in Panax ginseng, damarenediol-II synthase (PgDDS) and two cytochrome P450 enzymes (CYP716A47 and CYP716A53v2) are essentially required. Methods: Transgenic tobacco co-overexpressing P. ginseng PgDDS, CYP716A47, and CYP716A53v2 was constructed via Agrobacterium-mediated transformation. Results: Expression of the three introduced genes in transgenic tobacco lines was confirmed by Reverse transcription-polymerase chain reaction (RT-PCR). Analysis of liquid chromatography showed three new peaks, dammarenediol-II (DD), protopanaxadiol (PPD), and PPT, in leaves of transgenic tobacco. Transgenic tobacco (line 6) contained $2.8{\mu}g/g$ dry weight (DW), $7.3{\mu}g/g$ DW, and $11.6{\mu}g/g$ DW of PPT, PPD, and DD in leaves, respectively. Production of PPT was achieved via cell suspension culture and was highly affected by auxin treatment. The content of PPT in cell suspension was increased 37.25-fold compared with that of leaves of the transgenic tobacco. Transgenic tobacco was not able to set seeds because of microspore degeneration in anthers. Transmission electron microscopy analysis revealed that cells of phloem tissue situated in the center of the anther showed an abnormally condensed nuclei and degenerated mitochondria. Conclusion: We successfully achieved the production of PPT in transgenic tobacco. The possible factors deriving male sterility in transgenic tobacco are discussed.