• Title/Summary/Keyword: PIC structure

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Analysis of Genetic Diversity and Structural Changes in Hanwoo Proven Bulls Population (한우 보증씨수소 집단의 유전적 다양성 및 구조 변화 분석)

  • Shin, Dong-Hyun;Kim, Do-Hyun;Oh, Jae-Don
    • ANNALS OF ANIMAL RESOURCE SCIENCES
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    • v.29 no.4
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    • pp.142-149
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    • 2018
  • In this study, 844 Hanwoo proven bulls in South Korea (called KPN) were classified into 8 groups based on their birth year. Microsatellite (MS) marker information for paternity identification of each individual is provided at the homepage of the National Agricultural Cooperation Federation, Korea (NACF) and is mainly for the analysis of genetic diversity and structural changes. The polymorphism analysis of KPN whole groups revealed the average number of alleles in each marker (number of alleles), the expected heterozygosity ($H_{ex}$), the observed heterozygosity ($H_{ob}$), the polymorphism information content (PIC) and the $F_{is}$ mean as 10.54, 0.764, 0.773, 0.727 and -0.014, respectively. For group D, with the birth year 2004-2005, the $H_{ex}$ and $H_{ob}$ were 0.777 and 0.792 respectively and the PIC was 0.740. The $H_{ex}$ of group C and D, with birth years 2003-2004 and 2007-2008, respectively, were greater than $H_{ob}$. In all the other groups, $H_{ob}$ was greater than $H_{ex}$. Genetic composition and structure were analyzed using STRUCTURE software. According to the analyzed results, the generation of Hanwoo groups showed changes in specific genetic components according to the flow. It was confirmed that the continuous improvement in the Hanwoo affects the genetic structure of the proven bulls group. The results of this study are expected to be used for enhancing the efficiency of Hanwoo improvement project.

Performance Evaluation of Multi-User Detectors Employing Subtractive Interference Cancellation Schemes for a DS-CDMA System (감산형 간섭제거기법을 적용한 DS-CDMA 다중사용자 검파기의 성능분석)

  • Seo, Jung-Wook;Kim, Young-Chul;Oh, Chang-Heon;Ko, Bong-Jin;Cho, Sung-Joon
    • Journal of Advanced Navigation Technology
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    • v.6 no.1
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    • pp.17-26
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    • 2002
  • In this paper, we have analyzed the BER (Bit Error Rate) performance of multi-user detectors employing SIC(Successive Interference Cancellation) and PIC (Parallel Interference Cancellation) which are the representative schemes in the subtractive interference cancellation. We have considered the MUD structure employing HIC (Hybrid Interference Cancellation) which combines SIC with PIC scheme, and then analyzed the BER performance. We have evaluated the BER performance of SIC and HIC schemes which execute the soft decision to generate the tentative data bit for the purpose of the interference cancellation in MAI and noise environments. Through the numerical analysis and computer simulation, it is shown that HIC can remove the effect of MAI more efficiently than the others, that improve the BER performance and increase the capacity of DS-CDMA systems regardless of the power control conditions. The reason is that the SIC scheme in front of HIC can solve the near-far problem caused by the imperfect power control and PIC scheme in the rear of it can improve the performance much more.

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Genetic diversity analysis of fourteen geese breeds based on microsatellite genotyping technique

  • Moniem, Hebatallah Abdel;Zong, Yang Yao;Abdallah, Alwasella;Chen, Guo-hong
    • Asian-Australasian Journal of Animal Sciences
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    • v.32 no.11
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    • pp.1664-1672
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    • 2019
  • Objective: This study aimed to measure genetic diversity and to determine the relationships among fourteen goose breeds. Methods: Microsatellite markers were isolated from the genomic DNA of geese based on previous literature. The DNA segments, including short tandem repeats, were tested for their diversity among fourteen populations of geese. The diversity was tested on both breeds and loci level and by mean of unweighted pair group method with arithmetic mean and structure program, phylogenetic tree and population structure were tested. Results: A total of 108 distinct alleles (1%) were observed across the fourteen breeds, with 36 out of the 108 alleles (33.2%) being unique to only one breed. Genetic parameters were measured per the 14 breeds and the 9 loci. Medium to high heterozygosity was reported with high effective numbers of alleles (Ne). Polymorphic information contents (PIC) of the screened loci was found to be highly polymorphic for eleven breeds; while 3 breeds were reported moderately polymorphic. Breeding coefficient ($F_{IS}$) ranged from -0.033 to 0.358, and the pair wise genetic differentiation ($F_{ST}$) ranged from 0.01 to 0.36 across the fourteen breeds; for the 9 loci observed and expected heterozygosity, and Ne were same as the breeds parameters, PIC of the screened loci reported 6 loci highly polymorphic and 3 loci to be medium polymorphic, and $F_{IS}$ ranged from -0.113 to 0.368. In addition, genetic distance estimate revealed a close genetic distance between Canada goose and Hortobagy goose breeds by 0.04, and the highest distance was between Taihu goose and Graylag goose (anser anser) breed by 0.54. Conclusion: Cluster analyses were made, and they revealed that goose breeds had hybridized frequently, resulting in a loss of genetic distinctiveness for some breeds.

Analysis of Parallel Interference Cancellation with the Improved Initial Stage (초기단을 개선시킨 병렬형 간섭 제거기에 관한 분석)

  • 염순진;정재윤;박용완
    • The Journal of Korean Institute of Communications and Information Sciences
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    • v.25 no.4A
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    • pp.464-470
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    • 2000
  • In this paper, we introduce a modified interference cancellation scheme to overcome MAI(Multiple Access Interference) in DS-CDMA. Among ICs(Interference Cancellers), PIC(Parallel Interference Canceller) requires the more stages to have the better BER(Bit Error Rate), and SIC(Successive Interference Canceller) faces the problems of power reordering and large delays. To resolve the problems of them, we propose a modified interference cancellation scheme combining SIC and PIC. The proposed interference canceller has improved the performance through the total received signal applied sorting method is fed into the initial stage. Its structure extracts the good characteristics because of the input signal removed MAI in the initial stage. The characteristics of the proposed system are as follows (1) smaller delay, and the strongest user signal is also reduced to MAI(unlike SIC), (2) it has the good BER performance only using fewer stages (unlike PIC).

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A Simple Multi-rate Parallel Interference Canceller for the IMT-2000 3GPP System (IMT-2000 3GPP 시스템을 위한 간단한 다중 전송률 병렬형 간섭제거기)

  • Kim, Jin-Kyeom;Oh, Seong-Keun;Sunwoo, Myung-Hoon
    • Journal of the Institute of Electronics Engineers of Korea TC
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    • v.38 no.12
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    • pp.10-19
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    • 2001
  • In this paper, we propose an effective but simple multi-rate parallel interference canceller(PIC) for the international mobile telecommunications-2000(IMT-2000) 3rd generation partnership project (3GPP) system. For effective multi-rate processing, we define the basic block as one symbol period of the dedicated physical control channel(DPCCH) having the lowest data rate and common to all users. Then, decision and interference cancellation are performed at every basic block. For an asynchronous channel, we propose an advance removal scheme that removes in advance multiple access interference(MAI) due to the next blockof other users with shorter delay. Introducing a pipeline structure at a sample base, we can implement efficiently the PIC using the advance removal scheme with a minimum hardware and no extra computations. Through computer simulations, we analyze the bit error rate(BER) performance of the proposed PIC with respect to signal-to-noise ratio(SNR) and the number of users.

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Genetic Diversity of 14 Indigenous Grey Goose Breeds in China Based on Microsatellite Markers

  • Tu, Yunjie;Chen, K.W.;Zhang, S.J.;Tang, Q.P.;Gao, Y.S.;Yang, N.
    • Asian-Australasian Journal of Animal Sciences
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    • v.19 no.1
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    • pp.1-6
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    • 2006
  • This experiment first cloned some microsatellite sequences for goose species by magnetic beads enriched method and studied the genetic structure research of 14 indigenous grey goose breeds using 19 developed and 12 searched microsatellite markers with middle polymorphism. According to the allele frequencies of 31 microsatellite sites, mean heterozygosity (H), polymorphism information content (PIC) and $D_A$ genetic distances were calculated for 31-microsatellite sites. The results showed that 25 of 31microsatellite sites were middle polymorphic, so the 25 microsatellite markers were effective markers for analysis of genetic relationship among goose breeds. The mean heterozygosity was between 0.4985 and 0.6916. The highest was in the Xupu (0.6916), and in the Yan was the lowest (0.4985) which was consistent with that of PIC. The phylogenetic tree was completed through analysis of UPGMA. Fencheng Grey, Shoutou, Yangjiang and Magang were grouped firstly, then Xongguo Grey, Wugang Tong, Changle and Youjiang were the second group; Gang, Yan Xupu and Yili were the third group; Yongkang Grey and Wuzeng were the fourth group. The results could provide basic molecular data for the research on the characteristics of local breeds in the eastern China, and a scientific basis for the conservation and utilization of those breeds.

Improvement of Proton Beam Quality from the High-intensity Short Pulse Laser Interaction with a Micro-structured Target

  • Seo, Ju-Tae;Yoo, Seung-Hoon;Pae, Ki-Hong;Hahn, Sang-June
    • Journal of the Optical Society of Korea
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    • v.13 no.1
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    • pp.22-27
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    • 2009
  • Target design study to improve the quality of an accelerated proton beam from the interaction of a high-intensity short pulse laser with an overdense plasma slab has been accomplished by using a two-dimensional, fully electromagnetic and relativistic particle-in-cell (PIC) simulation. The target consists of a thin core part and a thick peripheral part of equivalent plasma densities, while the ratio of the radius of the core part to the laser spot size, and the position of the peripheral part relative to the fixed core part were varied. The positive effects of this core-peripheral target structure could be expected from the knowledge of the typical target normal sheath acceleration (TNSA) mechanism in a laser-plasma interaction, and were apparently evidenced from the comparison with the case of a conventional simple planar target and the case of the transversal size reduction of the simple planar target. Improvements of the beam qualities including the collimation, the forward directionality, and the beam divergence were verified by detailed analysis of relativistic momentum, angular directionality, and the spatial density map of the accelerated protons.

Relation between Cultural Condition and Occurrence of Internal Cavity in Red Ginseng (재배조건(栽培條件)이 홍삼(紅參)의 내공발생(內空發生)에 미치는 영향(影響))

  • Yoon, Jong-Hyuk;Kim, Jai-Joung;Park, Hoon
    • Korean Journal of Soil Science and Fertilizer
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    • v.25 no.2
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    • pp.175-180
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    • 1992
  • The occurrence of internal cavity of in red ginseng is one of critical quality criteria. The occurrence of internal cavity mainly due to fresh ginseng character that is determined by growth conditions. Growth conditions and percent occurrence of internal cavity were investigated on various ginseng plantations for 6 years and the relation. ships among them were statistically analysed. In addition, field experiments were carried out seperately for the effect of special factors. 1. Internal cavity in red ginseng mainly occurred on area between central part and cortex part of tap root in red ginseng. It was suppose to be caused by characteristics of fresh ginseng. 2. Soil moisture decreased percent occurrence of internal cavity(PIC) above 27.5 % of PIC and increased below it. 3. The factors of shade structure with high intensity of light condition tend to increase PIC. PIC was decreased below 15.9 % of light transmittance rate and increased above it.

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Development of EST-SSR Markers for Evaluation of Genetic Diversity and Population Structure in Finger Millet (Eleusine coracana (L.) Gaertn.)

  • Lee, Myung Chul;Choi, Yu-Mi;Hyun, Do-Yoon;Lee, Sukyeung;Kim, Jin-Hee;Oh, Sejong
    • Proceedings of the Plant Resources Society of Korea Conference
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    • 2018.04a
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    • pp.105-105
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    • 2018
  • Finger millet, Eleusine coracana Gaertn., is more nutritious than other cereals and millets and widely cultivate in tropical regions of the world. However, status of its genetic diversity remained concealed due to lack of research work in this species. In recent years, microsatellites have become the most used markers for studying population genetic diversity. In present study, genetic diversity and structure of different populations of finger millet from Africa and South Asia was examined at molecular level using newly developed EST-Simple Sequence Repeat (EST-SSR) markers using a total of 1,927 ESTs of Eleusine coracana available in the NCBI database. In total, 46 primers produced 292 alleles in a size range of 100-500 bp and mean Polymorphism Information Content (PIC) and Marker Index (MI) were 0.372 and 1.04, respectively. 46 primers showed polymorphism and 21 primers were identified as having a PIC value above 0.5. Principal coordinates analysis and the dendrogram constructed out of combined data of both markers showed grouping of finger millet accessions to their respective area of collection. The 156 accessions was classified into four groups, such as three groups of Africa collection and one group of Asia. Results of present study can be useful in identifying diverse accessions and management of this plant resource. Moreover, the novel SSR markers developed can be utilized for various genetic analyses in this species in future.

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Analysis of Genetic Diversity and Population Structure of Buckwheat (Fagopyrum esculentum Moench) Landraces of Korea Using SSR Markers

  • Song, Jae-Young;Lee, Gi-An;Yoon, Mun-Sup;Ma, Kyung-Ho;Choi, Yu-Mi;Lee, Jung-Ro;Jung, Yeon-Ju;Park, Hong-Jae;Kim, Chung-Kon;Lee, Myung-Chul
    • Korean Journal of Plant Resources
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    • v.24 no.6
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    • pp.702-711
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    • 2011
  • Buckwheat (Fagopyrum esculentum Moench), one of the minor crops grown in Korea belonging to the Polygonaceae family, is an annual crop widely cultivated in Asia, Europe, and America and has a character of outcrossing and self-incompatibility. The objective of this study was to analyze the genetic variability, phylogenetic relationships and population structure of buckwheat landraces of Korea using SSR markers. Ten microsatellite markers have been detected from a total of 79 alleles among the 179 buckwheat accessions were collected from Korea. The number of allele per marker locus ($N_A$) ranged from 2 (GB-FE-001, GB-FE-043 and GB-FE-055) to 31 (GB-FE-035) with an average of 7.9 alleles. GB-FE-035 was the most polymorphic with the highest PIC value 0.93. Major allele frequencies ($M_{AF}$) for the 10 polymorphic loci varied from 0.12 to 0.97 with a mean allele frequency of 0.57. The expected heterozygosity ($H_E$) values ranged from 0.05 to 0.94 with an average of 0.53. The observed heterozygosity ($H_O$) ranged from 0.06 to 0.92 with an average of 0.42. The overall polymorphic information contents (PIC) values ranged from 0.05 to 0.93 with an average of 0.48. The landrace accessions of buckwheat used in the present study were not distinctly grouped according to geographic distribution. The study concludes that the results revealed genetic differentiation was low according to the geographic region because of outcrossing and self-incompatibility. We reported that our analyses on the genetic diversity of common buckwheat cultivars of Korea were performed by using of microsatellite markers.