• Title/Summary/Keyword: PC Clustering

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A detailed analysis of nearby young stellar moving groups

  • Lee, Jinhee
    • The Bulletin of The Korean Astronomical Society
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    • v.44 no.2
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    • pp.63.3-63.3
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    • 2019
  • Nearby young moving groups (NYMGs hereafter) are gravitationally unbound loose young stellar associations located within 100 pc of the Sun. Since NYMGs are crucial laboratories for studying low-mass stars and planets, intensive searches for NYMG members have been performed. For identification of NYMG members, various strategies and methods have been applied. As a result, the reliability of the members in terms of membership is not uniform, which means that a careful membership re-assessment is required. In this study, I developed a NYMG membership probability calculation tool based on Bayesian inference (Bayesian Assessment of Moving Groups: BAMG). For the development of the BAMG tool, I constructed ellipsoidal models for nine NYMGs via iterative and self-consistent processes. Using BAMG, memberships of claimed members in the literature (N~2000) were evaluated, and 35 per cent of members were confirmed as bona fide members of NYMGs. Based on the deficiency of low-mass members appeared in mass function using these bona fide members, low mass members from Gaia DR2 are identified. About 2000 new M dwarf and brown dwarf candidate members were identified. Memberships of ~70 members with RV from Gaia were confirmed, and the additional ~20 members were confirmed via spectroscopic observation. Not relying on previous knowledge about the existence of nine NYMGs, unsupervised machine learning analyses were applied to NYMG members. K-means and Agglomerative Clustering algorithms result in similar trends of grouping. As a result, six previously known groups (TWA, beta-Pic, Carina, Argus, AB Doradus, and Volans-Carina) were rediscovered. Three the other known groups are recognized as well; however, they are combined into two new separate groups (ThOr+Columba and TucHor+Columba).

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HVIA-GE: A Hardware Implementation of Virtual Interface Architecture Based On Gigabit Ethernet (HVIA-GE: 기가비트 이더넷에 기반한 Virtual Interface Architecture의 하드웨어 구현)

  • 박세진;정상화;윤인수
    • Journal of KIISE:Computer Systems and Theory
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    • v.31 no.5_6
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    • pp.371-378
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    • 2004
  • This paper presents the implementation and performance of the HVIA-GE card, which is a hardware implementation of the Virtual Interface Architecture (VIA) based on Gigabit Ethernet. The HVIA-GE card is a 32-bit/33MHz PCI adapter containing an FPGA for the VIA protocol engine and a Gigabit Ethernet chip set to construct a high performance physical network. HVIA-GE performs virtual-to-physical address translation, Doorbell, and send/receive completion operations in hardware without kernel intervention. In particular, the Address Translation Table (ATT) is stored on the local memory of the HVIA-GE card, and the VIA protocol engine efficiently controls the address translation process by directly accessing the ATT. As a result, the communication overhead during send/receive transactions is greatly reduced. Our experimental results show the maximum bandwidth of 93.7MB/s and the minimum latency of 11.9${\mu}\textrm{s}$. In terms of minimum latency HVIA-GE performs 4.8 times and 9.9 times faster than M-VIA and TCP/IP, respectively, over Gigabit Ethernet. In addition, the maximum bandwidth of HVIA-GE is 50.4% and 65% higher than M-VIA and TCP/IP respectively.

Variation of leaf morphology among 18 populations of Zelkova serrata Mak. (느티나무 18개 집단의 엽 형질 변이)

  • Kim, In-Sik;Kwon, Hae-Yun;Ryu, Keun-Ok;Choi, Hyung-Soon
    • Korean Journal of Breeding Science
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    • v.42 no.1
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    • pp.40-49
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    • 2010
  • This study was conducted to examine genetic variation on leaf characteristics of Zelkova serrata populations. Leaf samples were obtained from eighteen populations and fourteen leaf characteristics such as leaf blade length, leaf width, leaf area and etc. were measured. In all leaf characteristics, there were significant differences among populations and among individuals within population. Most variance of leaf characteristics was contributed to among individuals within population except for length from leaf base to maximum width (x3) and the ratio of x3 to leaf blade length (x10). The relatively high variations of leaf characteristics were found at Gurye, Jungeup and Gyungju populations while Youngwol, Cheongsong, Youngchun populations showed the lower variation. There was high correlation among leaf characteristics related to leaf size, but not among the variables of ratio between leaf characteristics. Length from leaf base to maximum width(x3) and the ratio of x3 to x10 showed significant positive correlation with latitude and altitude of populations, which reflect the differences of mean annual temperature among populations. Mean annual rainfall of populations showed negative correlation with leaf blade length, leaf width, length from apex to first serration and leaf area. Four principal components (PC) were deduced from principal component analysis, which explain the 88.5% of total variance of leaf characteristics. Leaf area, length from leaf base to maximum width, serration number and petiole length showed the highest contribution to PC1, PC2, PC3, PC4, respectively. According to cluster analysis, the populations of Z. serrata were divided into two groups, which reflect the difference of mean annual temperature between groups. Within group, however, specific tendency of clustering was not observed among populattions.

Intraspecies Volatile Interactions Affect Growth Rates and Exometabolomes in Aspergillus oryzae KCCM 60345

  • Singh, Digar;Lee, Choong Hwan
    • Journal of Microbiology and Biotechnology
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    • v.28 no.2
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    • pp.199-209
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    • 2018
  • Volatile organic compounds (VOCs) are increasingly been recognized as the chemical mediators of mold interactions, shaping their community dynamics, growth, and metabolism. Herein, we selectively examined the time-correlated (0 D-11 D, where D = incubation days) effects of intraspecies VOC-mediated interactions (VMI) on Aspergillus oryzae KCCM 60345 (S1), following co-cultivation with partner strain A. oryzae KACC 44967 (S2), in a specially designed twin plate assembly. The comparative evaluation of $S1_{VMI}$ (S1 subjected to VMI with S2) and its control ($S1_{Con}$) showed a notable disparity in their radial growth ($S1_{VMI}$ < $S1_{Con}$) at 5 D, protease activity ($S1_{VMI}$ > $S1_{Con}$) at 3-5 D, amylase activity ($S1_{VMI}$ < $S1_{Con}$) at 3-5 D, and antioxidant levels ($S1_{VMI}$ > $S1_{Con}$) at 3 D. Furthermore, we observed a distinct clustering pattern for gas chromatography-time of flight-mass spectrometry datasets from 5 D extracts of $S1_{VMI}$ and $S1_{Con}$ in principle component analysis (PC1: 30.85%; PC2: 10.31%) and partial least squares discriminant analysis (PLS-DA) (PLS1: 30.77; PLS2: 10.15%). Overall, 43 significantly discriminant metabolites were determined for engendering the metabolic variance based on the PLS-DA model (VIP > 0.7, p < 0.05). In general, a marked disparity in the relative abundance of amino acids ($S1_{VMI}$ > $S1_{Con}$) at 5 D, organic acids ($S1_{VMI}$ > $S1_{Con}$) at 5 D, and kojic acid ($S1_{VMI}$ < $S1_{Con}$) at 5-7 D were observed. Examining the headspace VOCs shared between S1 and S2 in the twin plate for 5 D incubated samples, we observed the relatively higher abundance of C-8 VOCs (1-octen-3-ol, (5Z)-octa-1,5-dien-3-ol, 3-octanone, 1-octen-3-ol acetate) having known semiochemical functions. The present study potentially illuminates the effects of VMI on commercially important A. oryzae's growth and biochemical phenotypes with subtle details of altered metabolomes.

The Variation of Winter Buds among 10 Selected Populations of Kalopanax septemlobus Koidz. in Korea

  • Kim, Sea-Hyun;Ahn, Young-sang;Jung, Hyun-Kwon;Jang, Yong-Seok;Park, Hyung-Soon
    • Plant Resources
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    • v.5 no.3
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    • pp.214-223
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    • 2002
  • The objective of this study was to understand the conservation of gene resources and provide information for mass selection' of winter bud characters among the selected populations of Kalopanax septemlobus Koidz using analysis of variance(ANOVA) tests. The obtained results are shown below; 1. Ten populations of K. septemlobus were selected for the study of the variation of winter bud characters in Korea. The results of the analysis of variance(ANOVA) tests shows that there were statistically significant differences in all of the winter bud characters among those populations. 2. Correlation analysis shows that width between Height and DBH(Diameter at breast height) characters have negative relationship with all of the characters, as ABL(Apical branch length), ABW(Apical branch width), AWBL(Apical branch winter bud length), AWBW(Apical branch winter bud width), ABT(Apical branch No. of thorns), ABLB(Apical branch No. of lateral bud) and LBL(Lateral branch length), LBW(Lateral branch width), LBT(Lateral branch No. of thorns), LBLB(Lateral branch No. of lateral bud). 3. The result of principal component analysis(PCA) for winter buds showed that the first principal components(PC' s) to the fourth principal component explains about 78% of the total variation. The first principal component(PC) was correlated with AWBW, LWBW, and LBL and the ratio of ABL/ABW and LBL/LBW out of 16 winter bud characters. The second principal component correlated with ABL, ABW, ABLB, LWBL(Lateral branch winter bud length), and LBW and the ratio of AWBL/AWBW. The third principal component correlated with ABL, ABW, LWBL, LBL, and the ratio of LBL/LBW. The fourth principal component correlated with LBL and the ratio of LWBL/LWBW(Lateral branch winter bud width), LBL/LBW. Therefore, these characters were important to analysis of the variation for winter bud characters among selected populations of K. septemlobus in Korea. 4. Cluster analysis using the average linkage method based on 10 selected populations for the 16 winter bud characters of K. septemlobus in Korea showed a clustering into two groups by level of distance 1.1(Fig. 3). As can be seen in Fig. 3, Group I consisted of three areas(Mt. Sori, Mt. Balwang and Mt. Worak) and Group Ⅱ contisted of seven areas(Suwon, Mt. Chuwang, Mt. Kyeryong, Mt. Kaji, Mt. Jiri, Muan, and Mt. Halla). The result of cluster analysis for winter bud characters corresponded well with principal component analysis, as is shown in Fig. 2.

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Association between High Diffusion-Weighted Imaging-Derived Functional Tumor Burden of Peritoneal Carcinomatosis and Overall Survival in Patients with Advanced Ovarian Carcinoma

  • He An;Jose AU Perucho;Keith WH Chiu;Edward S Hui;Mandy MY Chu;Siew Fei Ngu;Hextan YS Ngan;Elaine YP Lee
    • Korean Journal of Radiology
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    • v.23 no.5
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    • pp.539-547
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    • 2022
  • Objective: To investigate the association between functional tumor burden of peritoneal carcinomatosis (PC) derived from diffusion-weighted imaging (DWI) and overall survival in patients with advanced ovarian carcinoma (OC). Materials and Methods: This prospective study was approved by the local research ethics committee, and informed consent was obtained. Fifty patients (mean age ± standard deviation, 57 ± 12 years) with stage III-IV OC scheduled for primary or interval debulking surgery (IDS) were recruited between June 2016 and December 2021. DWI (b values: 0, 400, and 800 s/mm2) was acquired with a 16-channel phased-array torso coil. The functional PC burden on DWI was derived based on K-means clustering to discard fat, air, and normal tissue. A score similar to the surgical peritoneal cancer index was assigned to each abdominopelvic region, with additional scores assigned to the involvement of critical sites, denoted as the functional peritoneal cancer index (fPCI). The apparent diffusion coefficient (ADC) of the largest lesion was calculated. Patients were dichotomized by immediate surgical outcome into high- and low-risk groups (with and without residual disease, respectively) with subsequent survival analysis using the Kaplan-Meier curve and log-rank test. Multivariable Cox proportional hazards regression was used to evaluate the association between DWI-derived results and overall survival. Results: Fifteen (30.0%) patients underwent primary debulking surgery, and 35 (70.0%) patients received neoadjuvant chemotherapy followed by IDS. Complete tumor debulking was achieved in 32 patients. Patients with residual disease after debulking surgery had reduced overall survival (p = 0.043). The fPCI/ADC was negatively associated with overall survival when accounted for clinicopathological information with a hazard ratio of 1.254 for high fPCI/ADC (95% confidence interval, 1.007-1.560; p = 0.043). Conclusion: A high DWI-derived functional tumor burden was associated with decreased overall survival in patients with advanced OC.

Development for Wetland Network Model in Nakdong Basin using a Graph Theory (그래프이론을 이용한 낙동강 유역의 습지네트워크 구축모델 개발)

  • Rho, Paikho
    • Journal of Wetlands Research
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    • v.15 no.3
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    • pp.397-406
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    • 2013
  • Wetland conservation plan has been established to protect ecologically important wetlands based on vegetation integrity, spatial distribution of endangered species, but recently more demands are concentrated on the landscape ecological approaches such as topological relationship, neighboring area, spatial arrangements between wetlands at the broad scale. Landscape ecological analysis and graph theory are conducted to identify spatial characteristics related to core nodes and weak links of wetland networks in Nakdong basin. Regular planar model, which is selected for wetland networks, is applied in the Nakdong basin. The analysis indicates that 5 regional groups and 4 core wetlands are extracted with 15km threshold distance. The IIC and PC values based on the binary and probability models suggest that the wetland group C composed of main stream of Nakdong river and Geumho river is the most important area for wetland network. Wetland conservation plan, restoration projected of damaged and weak links between wetlands should be proposed through evaluating the node, links, and networks from wetlands at the local to the regional scale in Nakdong basin.

Rapid metabolic discrimination between Zoysia japonica and Zoysia sinica based on multivariate analysis of FT-IR spectroscopy (FT-IR스펙트럼 데이터의 다변량통계분석 기반 들잔디와 갯잔디의 대사체 수준 신속 식별 체계)

  • Yang, Dae-Hwa;Ahn, Myung Suk;Jeong, Ok-Cheol;Song, In-Ja;Ko, Suk-Min;Jeon, Ye-In;Kang, Hong-Gyu;Sun, Hyeon-Jin;Kwon, Yong-Ik;Kim, Suk Weon;Lee, Hyo-Yeon
    • Journal of Plant Biotechnology
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    • v.43 no.2
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    • pp.213-222
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    • 2016
  • This study aims to establish a system for the rapid discrimination of Zoysia species using metabolite fingerprinting of FT-IR spectroscopy combined with multivariate analysis. Whole cell extracts from leaves of 19 identified Zoysia japonica, 6 identified Zoysia sinica, and 38 different unidentified Zoysia species were subjected to Fourier transform infrared spectroscopy (FT-IR). PCA (principle component analysis) and PLS-DA (partial least square discriminant analysis) from FT-IR spectral data successfully divided the 25 identified turf grasses into two groups, representing good agreement with species identification using molecular markers. PC (principal component) loading values show that the $1,100{\sim}950cm^{-1}$ region of the FT-IR spectra are important for the discrimination of Zoysia species. A dendrogram based on hierarchical clustering analysis (HCA) from the PCA and PLS-DA data of turf grasses showed that turf grass samples were divided into Zoysia japonica and Zoysia sinica in a species-dependent manner. PCA and PLS-DA from FT-IR spectral data of Zoysia species identified and unidentified by molecular markers successfully divided the 49 turf grasses into Z. japonica and Z. sinica. In particular, PLS-DA and the HCA dendrogram could mostly discriminate the 47 Z. japonica grasses into two groups depending on their origins (mountainous areas and island area). Considering these results, we suggest that FT-IR fingerprinting combined with multivariate analysis could be applied to discriminate between Zoysia species as well as their geographical origins of various Zoysia species.

Seasonal fluctuations and changing characteristics of a temperate zone wetland bird community

  • Lee, Soo-Dong;Kang, Hyun-Kyung
    • Journal of Ecology and Environment
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    • v.43 no.2
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    • pp.104-116
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    • 2019
  • Background: The composition of wild bird populations in temperate zones greatly varies depending on phenological changes rather than other environmental factors. Particularly, wild birds appearing in wetlands fluctuate greatly due to the crossover of species arriving for breeding during the summer and for wintering. Therefore, to understand the changes to species composition related to phenology, we conducted this basic analysis of populations to further the cause of the protection of wetland-dependent wild birds. Methods: It is wrong to simply divide a wild bird population investigation into seasons. This study identifies species composition and indicator species that change along with seasons. Wetlands to be surveyed are protected by natural monuments and wetland inventory and are in a state close to nature. In order to identify as many species as possible in wetlands, a survey was conducted in both shallow and deep wetlands. The water depth varied in these areas, ranging from 0.2 to 2.0 m, allowing for both dabbling and diving ducks to inhabit the area. Surveys were conducted using line-transect and distance sampling methods and were conducted at intervals of 2 weeks. The survey was conducted under the following three categories: the eco-tone and emergent zone, the submergent zone, and the water surface. The survey was conducted along a wetland boundary by observing wild birds. A PC-ord program was used for clustering, and the SAS program was used to analyze the changes in species composition. The data strongly indicates that day length is the main factor for seasonal migration periods, despite the fact that climate change and increasing temperatures are often discussed. Results and conclusions: The indicator species for determining seasons include migrant birds such as Ardea cinerea, Alcedo atthis, Anas penelope, and Poiceps ruficollis, as well as resident birds such as Streptopelia orientalis and Emberiza elegans. Importantly, increases in local individual counts of these species may also serve as indicators. The survey results of seasonal fluctuations in temperate zones shows that spring (April to June), summer (July to September), autumn (October), and winter (November to March) are clearly distinguishable, even though spring and summer seasons tend to overlap, leading to the conclusion that additional research could more clearly identify fluctuation patterns in species composition and abundance in the study area.

A study on Military Adapting Method of Non-stop Server using Clustering (클러스터링을 이용한 무정지서버의 군적용방안에 관한 연구)

  • Lee, Kyung-Chan;Lee, Sang-Hoon
    • Proceedings of the Korea Information Processing Society Conference
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    • 2002.11c
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    • pp.2383-2386
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    • 2002
  • 많은 ISP업체와 서버 관리자들은 자신의 시스템 향상을 위하여 많을 비용을 쏟아 붇고 있지만 그 결과는 비관적이다. 지금까지는 하드웨어적인 성능만을 고려하였으나, 최근에는 리눅스를 탑재하여 낮은 가격과 높은 가용성을 가지면서, 증가하는 네트워크 요청에 효과적으로 대응하기 위한 해결책으로 여러 대의 호스트로 구성되는 클러스터링 기술이 각광을 받고 있다. 또한 클러스터는 저렴한 호스트들로 구성되므로 구축 비용이 절감되는것 뿐만 아니라, 일부 호스트가 고장 나더라도 다른 호스트는 네트워크 작업 분담을 재설정하여 정상적으로 동작함으로 가용성이 항상 유지될 수 있다는 것을 보여준다. 최근 군에서도 정보화 과학화의 열풍에 힘입어 그 어느때보다도 업무의 전산화, 정보화에 박차를 가하고 있는 실정이다. 이로 인한 군업무에 적용되는 중대형 서버의 증가와 1인 1PC정책에 의한 클라이언트의 증가, 네트웍 인프라 구축에 심혈을 기울이고 있다. 그러나 사용자의 요구만큼 군환 경하에서의 정보화 업무를 감당하는 서버의 역량은 제한이 있다. 군업무의 특수성에 비추어 볼때에도 사회의 금융업무와 마찬가지로 중단없는 서비스의 수행과 서버의 안정화는 군전산의 가장 중요한 요소중의 하나임에 불구하고 아직까지도 현실성은 많이 미비한 상태이다. 본 연구는 이와 같은 문제를 해결하기 위하여 NAS와 SAN개념(네트웍기반)을 도입하여 군 서버 구축 새로운 패러다임을 제공하여 업무의 통폐합과 함께 서버의 통폐합의 전초단계인 무정지 클러스터링 서버의 구축방안을 제시하여 군정보화, 과학화의 초석을 다지는 계기로 삼고자 한다.위상변화에 대한 적응성을 높일 수 있도록 한다. SQL Server 2000 그리고 LSF를 이용하였다. 그리고 구현 환경과 구성요소에 대한 수행 화면을 보였다.ool)을 사용하더라도 단순 다중 쓰레드 모델보다 더 많은 수의 클라이언트를 수용할 수 있는 장점이 있다. 이러한 결과를 바탕으로 본 연구팀에서 수행중인 MoIM-Messge서버의 네트워크 모듈로 다중 쓰레드 소켓폴링 모델을 적용하였다.n rate compared with conventional face recognition algorithms. 아니라 실내에서도 발생하고 있었다. 정량한 8개 화합물 각각과 총 휘발성 유기화합물의 스피어만 상관계수는 벤젠을 제외하고는 모두 유의하였다. 이중 톨루엔과 크실렌은 총 휘발성 유기화합물과 좋은 상관성 (톨루엔 0.76, 크실렌, 0.87)을 나타내었다. 이 연구는 톨루엔과 크실렌이 총 휘발성 유기화합물의 좋은 지표를 사용될 있고, 톨루엔, 에틸벤젠, 크실렌 등 많은 휘발성 유기화합물의 발생원은 실외뿐 아니라 실내에도 있음을 나타내고 있다.>10)의 $[^{18}F]F_2$를 얻었다. 결론: $^{18}O(p,n)^{18}F$ 핵반응을 이용하여 친전자성 방사성동위원소 $[^{18}F]F_2$를 생산하였다. 표적 챔버는 알루미늄으로 제작하였으며 본 연구에서 연구된 $[^{18}F]F_2$가스는 친핵성 치환반응으로 방사성동위원소를 도입하기 어려운 다양한 방사성의 약품개발에 유용하게 이용될 수 있을 것이다.었으나 움직임

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