• Title/Summary/Keyword: Operating DNA

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CEO's Innovation DNA and Innovation : Fit of Environment (경영자 혁신DNA와 혁신 : 환경 적합성)

  • Kim, Seung Ho;Huh, Moo Yul
    • Asia-Pacific Journal of Business Venturing and Entrepreneurship
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    • v.10 no.1
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    • pp.95-110
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    • 2015
  • Most innovation related theories including entrepreneurship theory regard the CEO's innovative competencies as the starting point of innovation. The study was investigated the relationship between CEO's innovation DNA and Innovation and the effects of environmental fit in their relation. For the empirical test, the sample was collected from 110 manufacturing companies in Daegu and Gyeongbook region. The results as follows: First, Innovation DNA has generally significant positive effect on innovation. The effect of discovery DNA is stronger than operating DNA to the product innovation, but the operating DNA stronger than the discovery DNA to the process innovation. The fit between CEO's innovative DNA and exogenous environmental turbulence make a strength innovation. The supplementary fit between discovery DNA and technology turbulence and complementary fit between discovery DNA and market turbulence reinforce product innovation. Process innovation were strengthen by the complementary fit between operating DNA and market turbulence.

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Efficient Implementing of DNA Computing-inspired Pattern Classifier Using GPU (GPU를 이용한 DNA 컴퓨팅 기반 패턴 분류기의 효율적 구현)

  • Choi, Sun-Wook;Lee, Chong-Ho
    • The Transactions of The Korean Institute of Electrical Engineers
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    • v.58 no.7
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    • pp.1424-1434
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    • 2009
  • DNA computing-inspired pattern classification based on the hypernetwork model is a novel approach to pattern classification problems. The hypernetwork model has been shown to be a powerful tool for multi-class data analysis. However, the ordinary hypernetwork model has limitations, such as operating sequentially only. In this paper, we propose a efficient implementing method of DNA computing-inspired pattern classifier using GPU. We show simulation results of multi-class pattern classification from hand-written digit data, DNA microarray data and 8 category scene data for performance evaluation. and we also compare of operation time of the proposed DNA computing-inspired pattern classifier on each operating environments such as CPU and GPU. Experiment results show competitive diagnosis results over other conventional machine learning algorithms. We could confirm the proposed DNA computing-inspired pattern classifier, designed on GPU using CUDA platform, which is suitable for multi-class data classification. And its operating speed is fast enough to comply point-of-care diagnostic purpose and real-time scene categorization and hand-written digit data classification.

Improvement in Sensitivity by Increasing the Frequency of SAW Sensors for DNA Detection (DNA 측정용 SAW 센서의 주파수 증대에 의한 감도향상)

  • Sakong, Jung-Yul;Kim, Jae-Ho;Lee, Soo-Suk;Roh, Yong-Rae
    • The Journal of the Acoustical Society of Korea
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    • v.26 no.1
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    • pp.42-47
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    • 2007
  • In this paper. we have studied improvement in sensitivity by increasing the frequency of SAW sensors for detecting the immobilization and hybridization of DNA. The sensor consists of twin SAW delay lines operating at 200MHz, a sensing channel and a reference channel. fabricated on $36^{\circ}$ rotated Y-cut X-propagation $LiTaO_3$ crystals. The optimum concentration of probe and target DNA was decided for the improvement of detection mechanism. and digital syringe pump system was used to reduce the human errors. The hybridization between immobilized probe DNA and target DNA on the gold-coated delay line results in mass loading on the delay line of the sensing channel. Thus, the relative frequency change was monitored in relation to the mass loading. The measurement results showed a good response of the sensor to the DNA hybridization with a maximum sensitivity level up to 0.066ng/m1/Hz.

Network-based Microarray Data Analysis Tool

  • Park, Hee-Chang;Ryu, Ki-Hyun
    • Journal of the Korean Data and Information Science Society
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    • v.17 no.1
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    • pp.53-62
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    • 2006
  • DNA microarray data analysis is a new technology to investigate the expression levels of thousands of genes simultaneously. Since DNA microarray data structures are various and complicative, the data are generally stored in databases for approaching to and controlling the data effectively. But we have some difficulties to analyze and control the data when the data are stored in the several database management systems or that the data are stored to the file format. The existing analysis tools for DNA microarray data have many difficult problems by complicated instructions, and dependency on data types and operating system. In this paper, we design and implement network-based analysis tool for obtaining to useful information from DNA microarray data. When we use this tool, we can analyze effectively DNA microarray data without special knowledge and education for data types and analytical methods.

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Graph coloring problem solving by calculations at the DNA level with operating on plasmids

  • Feng, Xiongfeng;Kubik, K.Bogunia
    • 제어로봇시스템학회:학술대회논문집
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    • 2001.10a
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    • pp.49.3-49
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    • 2001
  • In 1994 Adelman´s pioneer work demonstrated that deoxyribonucleic acid (DNA) could be used as a medium for computation to solve mathematical problems. He described the use of DNA based computational approach to solve the Hamiltonian Path Problem (HPP). Since then a number of combinatorial problems have been analyzed by DNA computation approaches including, for example: Maximum Independent Set (MIS), Maximal Clique and Satisfaction (SAT) Problems. In the present paper we propose a method of solving another classic combinatorial optimization problem - the eraph Coloring Problem (GCP), using specifically designed circular DNA plasmids as a computation tool. The task of the analysis is to color the graph so that no two nodes ...

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Development of an SH-SAW Sensor for Detection of DNA (DNA 측정용 SH-SAW 센서 개발)

  • Hur Youngjune;Pak Yukeun Eugene;Roh Yongrae
    • The Journal of the Acoustical Society of Korea
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    • v.24 no.3
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    • pp.160-165
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    • 2005
  • We have developed SH (shear horizontal) surface acoustic wave (SAW) sensors for detection of the immobilization and hybridization of DNA (deoxyribonucleic acid) on the gold coated delay line of transverse SAW devices. The experiments of DNA immobilization and hybridization were performed with 15-mer oligonucleotides (probe and complementary target DNA). The sensor consists of twin SAW delay line oscillators operating at 100 MHz fabricated on $36^{\circ}$ rotated Y-cut $LiTaO_3$ piezoelectric single crystals. The relative change in the frequency of the two oscillators was monitored to detect the hybridization between target DNA and immobilized probe DNA in pH 7.4 PBS (phosphate buffered saline) solution. The measurement results showed a good response of the sensor to the mass loading effects of the DNA immobilization and hybridization with the sensitivity up to $1.55{\cal}ng/{\cal}ml/Hz$.

Mitochondrial DNA Levels in Blood and Tissue Samples from Breast Cancer Patients of Different Stages

  • Xia, Peng;Wang, Hui-Juan;Geng, Ting-Ting;Xun, Xiao-Jie;Zhou, Wen-Jing;Jin, Tian-Bo;Chen, Chao
    • Asian Pacific Journal of Cancer Prevention
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    • v.15 no.3
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    • pp.1339-1344
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    • 2014
  • Aims: Alterations in mitochondrial DNA (mtDNA) have been implicated in carcinogenesis and tumor progression. We here evaluated the diagnostic and prognostic potential of mtDNA as a biomarker for breast cancer. Methods: Using multiplex real-time polymerase chain reaction, nuclear DNA (nDNA) and mtDNA levels in serum, buffy coat, tumor, and tumor-adjacent tissue samples from 50 breast cancer patients were determined and assessed for associations with clinicopathological features. To evaluate mtDNA as a biomarker for distinguishing between the four sample types, we created receiver operating characteristic (ROC) curves. Results: The mtDNA levels in buffy coat were significantly lower than in other sample types. Relative to tumor-adjacent tissue, reduced levels of mtDNA were identified in buffy coat and tumor tissue but not in serum. According to ROC curve analysis, mtDNA levels could be used to distinguish between buffy coat and tumor-adjacent tissue samples with good sensitivity (77%) and specificity (83%). Moreover, mtDNA levels in serum and tumor tissue were positively associated with cancer TMN stage. Conclusions: The mtDNA levels in blood samples may represent a promising, non-invasive biomarker in breast cancer patients. Additional, large-scale validation studies are required to establish the potential use of mtDNA levels in the early diagnosis and monitoring of breast cancer.

Plasma Circulating Cell-free Nuclear and Mitochondrial DNA as Potential Biomarkers in the Peripheral Blood of Breast Cancer Patients

  • Mahmoud, Enas H;Fawzy, Amal;Ahmad, Omar K;Ali, Amr M
    • Asian Pacific Journal of Cancer Prevention
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    • v.16 no.18
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    • pp.8299-8305
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    • 2016
  • Background: In Egypt, breast cancer is estimated to be the most common cancer among females. It is also a leading cause of cancer-related mortality. Use of circulating cell-free DNA (ccf-DNA) as non-invasive biomarkers is a promising tool for diagnosis and follow-up of breast cancer (BC) patients. Objective: To assess the role of circulating cell free DNA (nuclear and mitochondrial) in diagnosing BC. Materials and Methods: Multiplex real time PCR was used to detect the level of ccf nuclear and mitochondrial DNA in the peripheral blood of 50 breast cancer patients together with 30 patients with benign lesions and 20 healthy controls. Laboratory investigations, histopathological staging and receptor studies were carried out for the cancer group. Receiver operating characteristic curves were used to evaluate the performance of ccf-nDNA and mtDNA. Results: The levels of both nDNA and mtDNA in the cancer group were significantly higher in comparison to the benign and the healthy control group. There was a statistically significant association between nDNA and mtDNA levels and well established prognostic parameters; namely, histological grade, tumour stage, lymph node status andhormonal receptor status. Conclusions: Our data suggests that nuclear and mitochondrial ccf-DNA may be used as non-invasive biomarkers in BC.

Web-based DNA Microarray Data Analysis Tool

  • Ryu, Ki-Hyun;Park, Hee-Chang
    • Journal of the Korean Data and Information Science Society
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    • v.17 no.4
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    • pp.1161-1167
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    • 2006
  • Since microarray data structures are various and complicative, the data are generally stored in databases for approaching to and controlling the data effectively. But we have some difficulties to analyze and control the data when the data are stored in the several database management systems. The existing analysis tools for DNA microarray data have many difficult problems by complicated instructions, and dependency on data types and operating system, and high cost, etc. In this paper, we design and implement the web-based analysis tool for obtaining to useful information from DNA microarray data. When we use this tool, we can analyze effectively DNA microarray data without special knowledge and education for data types and analytical methods.

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