• Steel and Composite Structures
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• 제30권6호
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• pp.603-615
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• 2019

In the present work, free vibration of beams made of imperfect functionally graded materials (FGMs) including porosities is investigated. Because of faults during process of manufacture, micro voids or porosities may arise in the FGMs, and this situation causes imperfection in the structure. Therefore, material properties of the beams are assumed to vary continuously through the thickness direction according to the volume fraction of constituents described with the modified rule of mixture including porosity volume fraction which covers two types of porosity distribution over the cross section, i.e., even and uneven distributions. The governing equations of power law FGM (P-FGM) and sigmoid law FGM (S-FGM) beams are derived within the frame works of classical beam theory (CBT) and first order shear deformation beam theory (FSDBT). The resulting equations are solved using separation of variables technique and assuming FG beams are simply supported at both ends. To validate the results numerous comparisons are carried out with available results of open literature. The effects of types of volume fraction function, beam theory and porosity volume fraction, as well as the variations of volume fraction index, span to depth ratio and porosity volume fraction, on the first three non-dimensional frequencies are examined in detail.

• 한국미생물·생명공학회지
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• 제47권2호
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• pp.278-288
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• 2019

In the present investigation, we attempted to design a protocol to develop a hybrid protein with better bioremediation capacity. Using in silico approaches, a Hybrid Open Reading Frame (Hybrid ORF) is developed targeting the genes of microorganisms known for degradation of organophosphates. Out of 21 genes identified through BLAST search, 8 structurally similar genes (opdA, opd, opaA, pte RO, pdeA, parC, mpd and phnE) involved in biodegradation were screened. Gene conservational analysis categorizes these organophosphates degrading 8 genes into 4 super families i.e., Metallo-dependent hydrolases, Lactamase B, MPP and TM_PBP2 superfamily. Hybrid protein structure was modeled using multi-template homology modeling (3S07_A; 99%, 1P9E_A; 98%, 2ZO9_B; 33%, 2DXL_A; 33%) by $Schr{\ddot{o}}dinger$ software suit version 10.4.018. Structural verification of protein models was done using Ramachandran plot, it was showing 96.0% residue in the favored region, which was verified using RAMPAGE. The phosphotriesterase protein was showing the highest structural similarity with hybrid protein having raw score 984. The 5 binding sites of hybrid protein were identified through binding site prediction. The docking study shows that hybrid protein potentially interacts with 10 different organophosphates. The study results indicate that the hybrid protein designed has the capability of degrading a wide range of organophosphate compounds.

• Molecules and Cells
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• 제42권1호
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• pp.8-16
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• 2019

Mutations in the ${\beta}-catenin$ gene (CTNNB1) have been implicated in the pathogenesis of some cancers. The recent development of cancer genome databases has facilitated comprehensive and focused analyses on the mutation status of cancer-related genes. We have used these databases to analyze the CTNNB1 mutations assembled from different tumor types. High incidences of CTNNB1 mutations were detected in endometrial, liver, and colorectal cancers. This finding agrees with the oncogenic role of aberrantly activated ${\beta}-catenin$ in epithelial cells. Elevated frequencies of missense mutations were found in the exon 3 of CTNNB1, which is responsible for encoding the regulatory amino acids at the N-terminal region of the protein. In the case of metastatic colorectal cancers, in-frame deletions were revealed in the region spanning exon 3. Thus, exon 3 of CTNNB1 can be considered to be a mutation hotspot in these cancers. Since the N-terminal region of the ${\beta}-catenin$ protein forms a flexible structure, many questions arise regarding the structural and functional impacts of hotspot mutations. Clinical identification of hotspot mutations could provide the mechanistic basis for an oncogenic role of mutant ${\beta}-catenin$ proteins in cancer cells. Furthermore, a systematic understanding of tumor-driving hotspot mutations could open new avenues for precision oncology.

• Earthquakes and Structures
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• 제23권2호
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• pp.197-206
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• 2022

Recently, steel-timber hybrid buildings have become prevalent worldwide because several advantages of both steel and timber structures are maintained in the hybrid system. In Taiwan, seismic design specification related to steel-timber hybrid buildings remains void. In this study, the ductility capacity of steel-timber hybrid buildings in Taiwanese seismic design specification is first proposed and evaluated using nonlinear incremental dynamic analysis (IDA). Three non-linear structural models, 12-story, 8-story, and 6-story steel-timer hybrid buildings were constructed using OpenSees. In each model, Douglas-fir was adopted to assemble the upper 4 stories as a timber structure while a conventional steel moment-resisting frame was designated in the lower part of the model. FEMA P-695 methodology was employed to perform IDAs considering 44 earthquakes to assess if the ductility capacity of steel-timber hybrid building is appropriate. The analytical results indicate that the current ductility capacity of steel moment-resisting frames can be directly applied to steel-timber hybrid buildings if the drift ratio of each story under the seismic design force for buildings in Taiwan is less than 0.3%. As a result, engineers are able to design a steel-timber hybrid building straightforwardly by following current design specification. Otherwise, the ductility capacity of steel-timber hybrid buildings must be modified which depends on further studies in the future.

• 한국식물병리학회:학술대회논문집
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• 한국식물병리학회 2003년도 정기총회 및 추계학술발표회
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• pp.147.2-148
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• 2003

Complete nucleotide sequence of genome RNA of a Korean isolate of Pepper mottle virus (PepMoV-Vb) from field-collected diseased paprika (Capsicum annuum var grossum) was determined in this study. Symptoms of isolates of PepMoV were divided largely into two groups, vein banding (Vb) and vein clearing (Vc) patterns. PepMoV-Vb RNA consists of 9,640 nucleotides excluding the poly(A) tail. A single open reading frame was identified beginning at nucleotide position 169 encoding a polyprotein of 3024 amino acids which is typical of the Potyvirus genus. The complete nucleotide sequence and coding regions of PepMoV-Vb were compared to that of 11 potyviruses within the genus Potyvirus. The overall nucleotide sequence identity was 94.7 and 94.1％ identical to PepMoV-C and PepMoV-FL, respectively. Full-length cDNAs of PepMoV-Vbl were synthesized from purified viral RNAs by RT-PCR and their genome structure was analysed by RFLP analysis. This is the first report on complete nucleotide sequence of PepMoV isolated from paprika in Korea.

• 한국해양생명과학회지
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• 제3권1호
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• pp.1-8
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• 2018

Myosin is considered as the vital motor protein in vertebrates and invertebrates. Our present study was conducted to decipher the occurrence of myosin in dog fish (Squalus mitsukurii). We isolated one clone containing 979 bp cDNA sequence, which consisted of a complete coding sequence of 453 bp and a deduced amino acid sequence of 150 amino acids from the open reading frame with molecular weight, isoelectric point and aliphatic index are 16.72 Kda, 4.49 and 78.00, respectively. It contained 428 bp long 3' UTR with single potential polyadenylation signals (AATAAA). The predicted EF CA²⁺ binding domains were identified in residue 6-41, 83-118 and 133-150. A BLAST search indicates this protein exhibits a strong similarity to whale shark (Rhincodon typus) MLC3 (91% identical) and also house mouse (Mus musculus) MLC isoform 3f (81% identical). Phylogenetic analysis revealed that this protein is a MLC 3 isoform like protein. This protein also demonstrates highly conserved region with other myosin proteins. Homology modeling of S. mitsukuri was performed using crystal structure of Gallus gallus skeletal muscle myosin II based on high similarity. Reverse transcription-polymerase chain reaction (PCR), quantitative PCR results exhibits dogfish myosin protein is highly expressed in muscle tissue.

• Earthquakes and Structures
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• 제24권6호
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• pp.393-404
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• 2023

This paper presents the application of hybrid-simulation-based adapter elements for the non-linear two-scale analysis of reinforced concrete frames with masonry infills under seismic-like demands. The approach provides communication and distribution of the computations carried out by two or more remote or locally distributed numerical models connected through the OpenFresco Framework. The modeling consists of a global analysis formed by macro-elements to represent frames and walls, and to reduce global degrees of freedom, portions of the structure that require advanced analysis are substituted by experimental elements and dimensional couplings acting as interfaces with their respective sub-assemblies. The local sub-assemblies are modeled by solid finite elements where the non-linear behavior of concrete matrix and masonry infill adopt a continuum damage representation and the reinforcement steel a discrete one, the conditions at interfaces between concrete and masonry are considered through a contact model. The methodology is illustrated through the analysis of a frame-wall system subjected to lateral loads comparing the results of using macro-elements, finite element model and experimental observations. Finally, to further assess and validate the methodology proposed, the paper presents the pushover analysis of two more complex structures applying both modeling scales to obtain their corresponding capacity curves.

• Earthquakes and Structures
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• 제25권5호
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• pp.343-358
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• 2023

The superelastic viscous damper (SVD) is a hybrid passive control device comprising a viscoelastic damper and shape memory alloy (SMA) cables connected in series. The SVD is an innovative damper through which a large amount of seismic energy can dissipate. The current study assessed the seismic collapse induced by steel moment-resisting frames (SMRFs) equipped with SVDs and compared them with the performance of special MRFs and buckling restrained brace frames (BRBFs). For this purpose, nonlinear dynamic and incremental dynamic analysis (IDA) were conducted in OpenSees software. Both 5- and 9-story special MRFs, BRBFs, and MRFs equipped with the SVDs were examined. The results indicated that the annual exceedance rate for maximum residual drifts of 0.2% and 0.5% for the BRBFs and MRFs with SVDs, respectively, were considerably less than for SMRFs with reduced-beam section (RBS) connections and that the seismic performances of these structures were enhanced with the use of the BRB and SVD. The probability of collapse due to residual drift in the SVD, BRB, and RBS frames in the 9-story structure was 1.45, 1.75, and 1.05 times greater than for the 5-story frame.

• 미생물학회지
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• 제42권4호
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• pp.246-251
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• 2006

사상성 진균인 Aspergillus nidulans에서 유성분화초기단계, 또는 유성분화유도를 위한 세포내 조건 형성과정에 관여할 것으로 예상되는 유전자를 탐색하였다. 선행연구결과를 통해 유성분화를 전혀 하지 못하는 NSD (never in sexual development) 돌연변이주가 분리되어 nsdA, nsdB, nsdC, 그리고 nsdD의 4상 보군으로 동정된 바 있다. 본 연구에서는 이들 유전자 중 nsdC 유전자를 분리하고자 A. nidulans AMAl-Not I Genomic DNA library로 nsdC6 돌연변이균주를 형질전환하여 야생형처럼 유성분화를 할 수 있는 형질전환체를 분리하고 이들로부터 약 10 kb genomic DNA가 삽입된 library DNA를 분리하였다. Genomic priming system (GPS)을 이용하여 nsdC6 돌연변이를 상보하는 유전자의 부분 서열을 확보한 후 전체 DNA 염기서열을 결정하였다. 유전자분석 결과 nsdC는 intron 없이 1,929염기(643개의 아미노산)로 구성된 Open reading frame (ORF)를 가지며, 약 1kb 정도의 비교적 긴 5'-UTR 부위에 2개의 intron을 가지고 있음이 확인되었다. 또한 NsdC polypeptide의 중앙에 $C_2H_2C_2H_2C_2HC$ 형의 zinc finger DNA binding domain과 C 말단 부위에 coiled-coil domain이 존재하였다. nsdC6 돌연변이는ORF의 407 bp와 408 bp사이에 엽기 T가 삽입되어 frameshift가 일어난 것으로 밝혀졌다. 따라서 nsdC6 돌연변이균주는 단지 139개 아미노산만 갖고 있는 결실 단백질이 생산됨을 알 수 있었다.

• Applied Biological Chemistry
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• 제40권6호
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• pp.495-500
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• 1997

Cyclodextrin을 합성하는 효소 CGTase를 호염기성 Bacillus sp. E1으로부터 분리하기 위하여 PCR을 실시하였다. PCR을 위하여 합성한 primer의 염기서열은 현재까지 보고된 CGTase 유전자의 염기서열을 비교 분석하여 가장 높게 보존된 영역을 찾아내어 선택하였다. PCR 증폭 결과 1.2 kbp 크기의 DNA 절편을 얻을 수 있었고 이를 molecular probe로 이용하여 Southern blot 분석을 실시하였다. Southern blot 분석결과 CGTase 유전자는 염색체 DNA를 제한효소 XbaI으로 절단한 5.3 kbp 절편내에 존재한다는 사실을 알아내었다. CGTase 유전자를 분리하기 위하여 유전자 은행을 제조한 후 선별작업을 실시하여 genomic clone인 pCGTE1을 얻을 수 있었다. pCGTEl의 염기서열을 결정한 결과 분리한 CGTase 유전자는 2109 bp의 open reading frame을 가지며 이는 703개의 아미노산으로 구성된 단백질을 coding하는 것으로 나타났다. 아미노산 서열의 유사성을 비교한 결과 Bacillus sp. KC201의 CGTase 와 가장 높은 94.3% 동질성을 나타내었다.