• 제목/요약/키워드: Nested-PCR

검색결과 308건 처리시간 0.019초

토마토 (Solanum lycopersicum) 과육의 숙성정도에 따른 peptide:N-glycanase 발현 분석 (Characterization of peptide:N-glycanase from tomato (Solanum lycopersicum) fruits)

  • 위수진;박기영
    • Journal of Plant Biotechnology
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    • 제41권3호
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    • pp.159-167
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    • 2014
  • 진핵생물의 유전자 발현 과정에서 생성된 단백질은 전사후 변형 과정을 통해 소포체와 골지체에서 당질화가 일어난다. 당질화된 당단백질은 접힘의 오류가 있는 경우를 비롯하여 식물의 분화 조절 등의 경우 당단백질이 분해되며, 이 때 PNGase에 의해 N-당사슬이 단백질의 아스파라긴산 잔기로부터 절단된다. 그러나 식물의 발달과 분화 과정에서 PNGase의 발현 조절에 대해서는 거의 알려진 바가 없다. 기존에 보고된 유전적 정보를 활용하여 토마토의 잎에서 제조된 cDNA library에서 nested RT-PCR을 통하여 PNGase T의 유전자(GenBank Accession number KM401550)를 분리하였는데 이의 ORF는 1,767 bp, 588개의 이미노산으로 이루어졌으며, 분자량은 65.8 KDa이었다. PNGase T의 유전자는 토마토 과육에서 높은 수준으로 항시적으로 발현되었으며, 특히 녹색과보다는 오렌지색으로 숙성되는 과정에서 PNGase T의 전사체량이 크게 증가하였다. 이러한 발현 패턴은 토마토 과육에서 세포죽음의 과정에서 증가하는 단백질 가수분해 효소인 metacaspase의 전사체 증가 페턴과 유사하였으며, 이 시기에는 에틸렌의 생합성 효소 중 노화관련 ACC synthase의 유전자 members (LeACS2, LeACS4, LeACS6)의 발현 패턴과도 유사하였다. 따라서 토마토 과육에서 PNGase T의 유전자 발현은 거대분자가 분해되는 시기에서 과육의 숙성과 노화 과정에서 특이적인 생리적 기능을 나타내는 것으로 판단된다. 향 후 고가의 의약용 재조합단백질의 면역부작용을 완화하기 위하여 식물체 유래의 당단백질의 탈당질화과정에서 PNGase T를 활용함으로써 식물생명공학 분야에서 활용가치가 높을 것으로 사료된다.

Polymorphism of Bovine Lymphocyte Antigen DRB3.2 Alleles in Iranian Native Sarabi Cows

  • Pashmi, M.;Ghorashi, S.A.;Salehi, A.R.;Moini, M.;Javanmard, A.;Qanbari, S.;Yadranji-Aghdam, S.
    • Asian-Australasian Journal of Animal Sciences
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    • 제19권6호
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    • pp.775-778
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    • 2006
  • Sarabi cows (n = 136) from the Sarabi Breeding Station were genotyped at bovine lymphocyte antigen (BoLA)-DRB3.2 locus by a genotyping system that used the polymerase chain reaction and restriction fragment length polymorphism. Genomic DNA was extracted from whole blood samples. A two-step polymerase chain reaction was carried out in order to amplify a 284 base-pair fragment of target gene. Nested-PCR products were digested with three restriction endonuclease enzymes RsaI, BstYI and HaeIII. Digested fragments were analyzed by polyacrylamide gel electrophoresis. Twenty-six BoLA-DRB3.2 alleles were identified with frequencies ranging from 0.4 to 15.1%. Six new allele types observed in this study have not been reported previously. Identified alleles include: BoLA-DRB3.$2^*1$, $^*2$, $^*4$, $^*6$, $^*8$, $^*12$, $^*13$, $^*14$, $^*15$, $^*16$, $^*17$, $^*23$, $^*24$, $^*25$, $^*28$, $^*32$, $^*34$, $^*35$, $^*36$, $^*37$, $^*42$, $^*46$, $^*51$, $^*kba$, $^*laa$ and $^*vaa$. Their frequencies were found to be 0.4, 0.4, 0.7, 11.4, 1.1, 1.8, 2.9, 2.2, 4.4, 9.6, 1.1, 13.6, 0.4, 0.4, 1.1, 0.7, 0.4, 6.2, 2.2, 3.7, 1.1, 7.7, 1.5, 15.1, 2.6 and 7.3% respectively. The six most frequent alleles (DRB3.2 $^*6$, $^*16$, $^*23$, $^*46$, $^*kba$ and $^*vaa$) accounted for 64.7% of the alleles in the population of this herd. Numerous studies on this locus, covering different breeds, has revealed the existence of various alleles in this locus, and new investigations have introduced novel alleles. With respect to the high number of the observed alleles in this survey and the novelty of some alleles with no previous record of reporting, it is plausible to conclude that the BoLA-DRB3.2 locus is highly polymorphic in Iranian native Sarabi cows.

한국인 HIV 감염자에서 분리된 HIV-1 Subtype A의 env 유전자 V3-V5 부위의 계통적 분석 (Phylogenetic Analysis of env Gene V3-V5 Region of HIV-1 Subtype A Isolates from Korean)

  • 이주실;김은영;강춘;남정구;이성래;구본기;신영오
    • 대한바이러스학회지
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    • 제29권2호
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    • pp.119-127
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    • 1999
  • Phylogenetic analysis was conducted to monitor transmission of HIV and to investigate the genetic structure of primary isolates from 12 HIV-1 subtype A infected Koreans. The individuals infected with subtype A viruses had been diagnosed as HIV-1 seropositives during the period 1987 to 1995 and blood samples have been collected from 1991 to 1997. DNA of each individual was isolated from uncultured or cultured peripheral blood mononuclear cells. V3-V5 (0.7 kb) fragment of HIV-1 env gene was amplified by nested polymerase chain reaction and the PCR products were sequenced. The mean value of the divergence of nucleotide of HIV-1 env V3-V5 fragment was $17.0{\pm}4.06%$ ($8.6{\sim}25.8%$) within HIV-1 subtype A isolates from Koreans. This diversity was higher than those of African isolates ($13.7{\pm}2.66%$). In the phylogenetic tree, Korean subtype A isolates were not grouped together, but intermingled into African isolates. The results of this study suggested that HIV-1 subtype A variants be introduced from multiple sites of Africa into Korea and the big genetic diversity of Korea HIV-1 subtype A isolates may be further influenced by the range of geographic locations in which the infection occurred rather than the elapsed time between infection and collection of samples and the disease progression.

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Diagnostic Performance of Three Rapid Diagnostic Test Kits for Malaria Parasite Plasmodium falciparum

  • Park, Seo Hye;Jegal, Seung;Ahn, Seong Kyu;Jung, Haneul;Lee, Jinyoung;Na, Byoung-Kuk;Hong, Sung-Jong;Bahk, Young Yil;Kim, Tong-Soo
    • Parasites, Hosts and Diseases
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    • 제58권2호
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    • pp.147-152
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    • 2020
  • Malaria is a potent burden on public healthcare worldwide due to requiring rapid diagnosis and treatment. Nowadays, prompt diagnosis with rapid diagnostic tests (RDTs) has been widely accepted as an effective diagnostic technique in malaria-endemic countries, primarily due to their easy operation, fast output, and straightforward interpretation. The global availability and use of RDTs have gradually grown over recent decades as field-applicable diagnostic tests for the reliable confirmation of malaria infection and proper case management. This study was conducted to evaluate diagnostic performance of 3 commercially available malaria RDT kits : BIOCREDITTM Malaria Ag Pf(pLDH), Malaria Ag Pf(pLDH/pHRPII), and Malaria Ag Pf/Pv(pLDH/pLDH) (where pLDH and pHRPII stand for plasmodium lactate dehydrogenase and histidine-rich protein 2, respectively) for the specific detection of Plasmodium falciparum. A total of 1,129 blood samples including 95 blood samples, confirmed as vivax malaria infection by microscopic examinations and a nested-PCR method, were tested for falciparum malaria infection. The overall sensitivity and specificity of Malaria Ag Pf(pLDH/pHRPII), Malaria Ag Pf/Pv(pLDH/pLDH), and Pf(pLDH) for P. falciparum were 99.0% and 100%, 95.8% and 100%, and 100% and 100%, respectively. It is proposed that the 3 RDT kits perform reliable level of diagnostic accuracy of detection for P. falciparum parasites.

Korean Red Ginseng-intake has Definite Clinical Usefulness and causes Nef Gene Variation including High Frequency of Deletion

  • Cho Young Keol;Lee Hee Kyung;Ahn Sun Hee;Lee Hee Jung;Nam Ki Yeul
    • 고려인삼학회:학술대회논문집
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    • 고려인삼학회 2002년도 학술대회지
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    • pp.185-211
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    • 2002
  • We have found many beneficial effects of the long-tenn intake of Korean red ginseng (KRG) in human immunodeficiency virus (HIV) type-I infected patients, including the maintenance of CD4+ T cell count for 10 years with KRG only and the delayed development of resistance mutation to ZDV. In this study, to investigate whether KRG-intake could affect the clinical progression and nef gene variation, we determined 200nef sequences from 70 patients. Follow-up period was $8.8{\pm}2.9$ years and annual decrease in CD4+T cell was $41{\pm}57/ul.$ Nested polymerase chain reaction (PCR) and direct sequencing were perfonned with peripheral blood mononuclear cells (PBMC) obtained at times during the study period. First, there was a significant correlation between survival duration and duration of KRG-intake $(36.8{\pm}38$ months)(P=0.000). There were significant correlations between the last NefProg score and CD4+ T cell count (r= 0.208, P<0.05) and annual decrease in CD4+ T cell count (r =0.346, P<0.01) in 70 patients. In addition, there were significant correlations between KRG-intake and annual decrease (r= 0.323, P<0.01), and the CD4+ T cell count itself (r=0.229, p<0.05). Furthennore, there was also a mild significance between the NefProg score and the duration of KRG-intake in only SP and RP (n=30, r=-0.281, P=0.067). In addition, we detected various defects in 21 patients $(30.0\%),$ not including 5 premature stop codons. Ten $(12.5\%)$ patients showed repeated deletion of an amino acid. Four of 10 patients were gross deletions and they were treated with KRG for more than 20 months. The number of patients with repeated gross deletions was significantly higher in the order of slow progressors $(18\%)$, typical progressors($3\%$), and rapid progressors($0\%$) (P<0.05). We also observed that long-tenn intake of KRG might make the change from A or D to T at position 54 and decrease NefProg score. Taken together, our results show clear evidence that the long-term intake of KRG has effects on nef gene variation as well as definite clinical usefulness.

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Surveillance on the Vivax Malaria in Endemic Areas in the Republic of Korea Based on Molecular and Serological Analyses

  • Lee, Seong-Kyun;Hu, Fengyue;Firdaus, Egy Rahman;Park, Ji-Hoon;Han, Jin-Hee;Lee, Sang-Eun;Shin, Hyun-Il;Cho, Shin Hyeong;Park, Won Sun;Lu, Feng;Han, Eun-Taek
    • Parasites, Hosts and Diseases
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    • 제58권6호
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    • pp.609-617
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    • 2020
  • Plasmodium vivax reemerged in 1993. It has been sustained for more than 25 years and become one of the important indigenous parasitic diseases in northern and western parts of the Republic of Korea near the demilitarized zone. In particular, relapse is a significant concern for the control of malaria, as short- and long-term incubation periods vary among those infected in Korea. In this study, the prevalence of asymptomatic carriers was examined among residents of high endemic areas of vivax malaria during nonseasonal transmission of mosquitoes. Blood samples from 3 endemic regions in northwestern Korea were evaluated by microscopic examination, rapid diagnostic testing, and nested PCR to identify asymptomatic patients carrying malaria parasites in the community. However, no positive malaria case among residents of endemic areas was detected. Additionally, serological analysis was carried out to measure antibodies against 3 antigenic recombinant proteins of P. vivax, merozoite surface protein 1-19, circumsporozoite surface protein-VK210, and liver-stage antigen (PvLSA-N), by the protein array method. Interestingly, seropositivity of sera between previous exposure and samples without exposure to malaria was significantly higher using the PvLSA-N antigen than the other antigens, suggesting that PvLSA-N can be used as a serological marker to analyze the degree of exposure for malaria transmission in endemic areas. This indicates a very low asymptomatic carrier prevalence during the nonmalaria season in the endemic areas of Korea.

충청지역 집단급식소의 노로바이러스 실태조사와 환경요인의 영향 (Investigation of Norovirus Occurrence and Influence of Environmental Factors in Food Service Institutions of ChungCheong Area)

  • 정우영;엄준호;김병조;윤민호;주인선;김창수;김미라;변정아;박유경;손상혁;이은미;정래석;나미애;육동연;강지연;허옥순
    • 한국식품위생안전성학회지
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    • 제25권2호
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    • pp.153-161
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    • 2010
  • 충청지역권내 지하수를 사용하는 집단급식소의 식품용수 82시료의 norovirus 검출빈도를 조사한 결과 7시료에서 검출 되었으며, 이는 8.5%에 해당 하였다. Norovirus가 검출된 집단 급식소에 대해서는 식중독 발생이 우려됨에 따라 소독, 관정개발, 오염원제거 및 상수도 보급 등의 위생환경 개선과 유지관리가 필요하다. Norovirus의 검출에 영향을 주는 요인으로는 암모니아성질소, 총고형분, 과망간산칼륨 소비량으로 나타났다. Norovirus 양성 검출군과 음성 검출군의 수질특성을 비교한 결과 수소이온농도는 큰 차이가 없었고, 탁도, 암모니아성질소, 일반세균수, 총고형분 항목에 있어서 norovirus 양성 검출군 평균값이 음성 검출군 평균값 보다 높은 값을 나타내었다. Norovirus 검출과 관련성이 높은 환경인자의 지속적인 모니터링을 통해 집단 급식소 식중독예방에 기여할 수 있을 것으로 기대된다.

폐암발생과 Glutathione S-transferase M1, T1 및 N-acetyltransferase 1의 유전적 다형성과의 연관성에 관한 연구 (Association of Genetic Polymorphism of Glutathione S-transferase M1, T1 and N-acetyltransferase 1 with Lung Cancer)

  • 이승준;박계영;오연목;강대희;조수헌;김수웅;유철규;이춘택;김영환;한성구;심영수
    • Tuberculosis and Respiratory Diseases
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    • 제47권4호
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    • pp.471-477
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    • 1999
  • 연구배경 : 발암물질의 체내 대사효소계인 GSTM1, T1과 NAT1의 유전적다형성의 발현 양상이 폐암발생과 연관성이 있는가를 밝히기 위해 환자-대조군 연구를 수행하였다. 방 법 : 서울대병원에서 병리화적 폐암환자군으로, 비암성요료계질환으로 입원한 환자를 대조군으로 설정하여, 각 환자에 대한 성, 연령, 흡연력 등을 병력조사나 병록지검토로 얻었으며, 말초혈액을 채취하여 DNA를 분리한 뒤, 다중중합효소연쇄반응을 이용하여 GSTM1, T1의 유전자형을, nested PCR법을 이용하여 NAT1의 유전자형을 결정하였다. 결 과 : 모집된 환자, 대조군은 각각 118 명, 150명이었고, 환자군에서 흡연력은 통계적으로 의미있게 높았다(p<0.05). GSTM1의 소실형은 비소실형에 비해 편평상피암의 위험을 높였으나(OR=2.25 ; 95% CI=1.12-4.51), GSTT1의 경우는 폐암의 위험인자로 작용하지 않았다. NAT1의 fast acetylator형은 폐암환자전체를 분석했을 때 통계적으로 의미있는 위험도 상승을 보였다(OR=2.13; 95% CI=1.04-4.40). 결 론 : GSTM1의 소실형과 NAT1의 fast형은 폐암발생과 관련성이 있다.

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