• 제목/요약/키워드: Molecule-molecule interaction

검색결과 271건 처리시간 0.028초

칼륨 이온 치환 제올라이트 L 중의 C$_1$-C$_5$ 알칼 및 벤젠의 열역학적 특성

  • 문성두;김양;김은식;최대웅
    • 대한화학회지
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    • 제34권5호
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    • pp.389-395
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    • 1990
  • 칼륨 이온 치환 제올라이트 L과 C$_1$-C$_5$ 알칸 및 벤젠의 상호작용 퍼텐셜 에너지를 원자-원자 근사를 적용시켜서 계산하였다. 퍼텐셜 에너지 계산에 사용된 벤젠의 구성 원자 전하는 칼륨 이온과 벤젠 사이의 실험적 엔탈피 값으로부터 구했다. 계산된 퍼텐셜 에너지를 기초로하여 흡착분자의 열역학적 특성(흡착분자의 퍼텐셜 지도와 매우 낮은 피복률에서의 등량흡착열 및 내부에너지 변화량)을 계산하였다. C$_1$-C$_5$ 알칸의 계산된 등량흡착열은 실험데이타와 잘 일치하였지만, 벤젠의 계산값은 실험 값보다 조금 크게 나타났다.

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Solution structure and functional analysis of HelaTx1: the first toxin member of the κ-KTx5 subfamily

  • Park, Bong Gyu;Peigneur, Steve;Esaki, Nao;Yamaguchi, Yoko;Ryu, Jae Ha;Tytgat, Jan;Kim, Jae Il;Sato, Kazuki
    • BMB Reports
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    • 제53권5호
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    • pp.260-265
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    • 2020
  • Scorpion venom comprises a cocktail of toxins that have proven to be useful molecular tools for studying the pharmacological properties of membrane ion channels. HelaTx1, a short peptide neurotoxin isolated recently from the venom of the scorpion Heterometrus laoticus, is a 25 amino acid peptide with two disulfide bonds that shares low sequence homology with other scorpion toxins. HelaTx1 effectively decreases the amplitude of the K+ currents of voltage-gated Kv1.1 and Kv1.6 channels expressed in Xenopus oocytes, and was identified as the first toxin member of the κ-KTx5 subfamily, based on a sequence comparison and phylogenetic analysis. In the present study, we report the NMR solution structure of HelaTx1, and the major interaction points for its binding to voltage-gated Kv1.1 channels. The NMR results indicate that HelaTx1 adopts a helix-loop-helix fold linked by two disulfide bonds without any β-sheets, resembling the molecular folding of other cysteine-stabilized helix-loop-helix (Cs α/α) scorpion toxins such as κ-hefutoxin, HeTx, and OmTx, as well as conotoxin pl14a. A series of alanine-scanning analogs revealed a broad surface on the toxin molecule largely comprising positively-charged residues that is crucial for interaction with voltage-gated Kv1.1 channels. Interestingly, the functional dyad, a key molecular determinant for activity against voltage-gated potassium channels in other toxins, is not present in HelaTx1.

STAT3 Potentiates SIAH-1 Mediated Proteasomal Degradation of β-Catenin in Human Embryonic Kidney Cells

  • Shin, Minkyung;Yi, Eun Hee;Kim, Byung-Hak;Shin, Jae-Cheon;Park, Jung Youl;Cho, Chung-Hyun;Park, Jong-Wan;Choi, Kang-Yell;Ye, Sang-Kyu
    • Molecules and Cells
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    • 제39권11호
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    • pp.821-826
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    • 2016
  • The ${\beta}$-catenin functions as an adhesion molecule and a component of the Wnt signaling pathway. In the absence of the Wnt ligand, ${\beta}$-catenin is constantly phosphorylated, which designates it for degradation by the APC complex. This process is one of the key regulatory mechanisms of ${\beta}$-catenin. The level of ${\beta}$-catenin is also controlled by the E3 ubiquitin protein ligase SIAH-1 via a phosphorylation-independent degradation pathway. Similar to ${\beta}$-catenin, STAT3 is responsible for various cellular processes, such as survival, proliferation, and differentiation. However, little is known about how these molecules work together to regulate diverse cellular processes. In this study, we investigated the regulatory relationship between STAT3 and ${\beta}$-catenin in HEK293T cells. To our knowledge, this is the first study to report that ${\beta}$-catenin-TCF-4 transcriptional activity was suppressed by phosphorylated STAT3; furthermore, STAT3 inactivation abolished this effect and elevated activated ${\beta}$-catenin levels. STAT3 also showed a strong interaction with SIAH-1, a regulator of active ${\beta}$-catenin via degradation, which stabilized SIAH-1 and increased its interaction with ${\beta}$-catenin. These results suggest that activated STAT3 regulates active ${\beta}$-catenin protein levels via stabilization of SIAH-1 and the subsequent ubiquitin-dependent proteasomal degradation of ${\beta}$-catenin in HEK293T cells.

Phosphoinositides Signaling and Epithelial-to-Mesenchymal Transition: Putative Topic for Basic Toxicological Research

  • Lee, Chang-Ho
    • Toxicological Research
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    • 제24권1호
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    • pp.1-9
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    • 2008
  • Ptdlns(4,5)$P_2$ is a key cellular phosphoinositide that localizes in separate and distinctive pools in subcellular membrane and vesicular compartments. In membranes, Ptdlns(4,5)$P_2$ acts as a precursor to second messengers and is itself a main signaling and targeting molecule. Specific subcellular localization of type I PIP kinases directed by interacting with specific targeting module differentiates Ptdlns(4,5)$P_2$ production in a spatial and temporal manner. Several lines of evidences support the idea that Ptdlns(4,5)$P_2$ is generated in very specific pools in a spatial and temporal manner or by feeding Ptdlns(4,5)$P_2$ directly to effectors. In this concept, the interaction of PIPKI isoforms with a specific targeting module to allow precise subcellular targeting modulates highly specific Ptdlns(4,5)$P_2$ synthesis and channeling overall effectors. For instance, localization of PIPKI${\gamma}$661 to focal adhesions by an interaction with talin results in spatial and temporal production of Ptdlns(4,5)$P_2$, which regulates EGF-stimulated directional cell migration. In addition, Type $I{\gamma}$ PIPK is targeted to E-cadherin in cell adherence junction and plays a role in controlling dynamics of cell adherence junction and endocytosis of E-cadherin. Characterizing how PIP kinase isoforms are regulated by interactions with their targeting modules, as well as the mechanisms by which their product, Ptdlns(4,5)$P_2$, exerts its effects on cellular signaling processes, is crucial to understand the harmonized control of numerous cellular signaling pathways. Thus, in this review the roles of the Ptdlns(4)P(5) kinases and Ptdlns(4,5)$P_2$ were described and critically reviewed in terms of regulation of the E-cadherin trafficking, cell migration, and formation of cell adherence junction which is indispensable and is tightly controlled in epithelial-to-mesenchymal transition process.

Aflatoxin $B_1$ Charge-transfer Complex에 관(關)한 연구(硏究) -제1보(第一報) Benzene과의 Charge-transfer Complex- (Studies on the Charge-transfer Complex including Aflatoxin $B_1$ -Part I. Charge-transfer Complex with Benzene-)

  • 노익삼;이강흡
    • Applied Biological Chemistry
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    • 제17권2호
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    • pp.143-148
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    • 1974
  • Aflatoxin $B_1$은 전자수용성(電子受容性)을 높여주는 염화아연(鹽化亞鉛) 존재하(存在下)에서 전자공여성분자(電子供與性分子)인 Benzene과 Charge-transfer Complex를 만들며, 그 생성기구(生成機構)는 Aflatoxin $B_1$이 염화아연(鹽化亞鉛)과 일차적(一次的)으로 배위결합(配位結合)된 화합물(化合物)을 거쳐, 이것이 Benzene과 결합(結合)하여 착물(錯物)을 형성(形成)한다. 이 착물(錯物)의 안정도상수(安定度常數) 즉(卽) 평형상수(平衡常數) 0.198 l/mole이었다. 따라서 Aflatoxin $B_1$은 약(弱)한 전자수용체(電子受容體)이나, Benzene 보다 강(强)한 전자공여체(電子供與體)와는 염화아연(鹽化亞鉛)이 존재(存在)하지 않아도 Charge-transfer Complex를 만들 수 있다는 가능성(可能性)을 제시(提示)해 주는 것이며, Tryptophane, Histidine과 같은 강(强)한 전자공여체(電子供與體)를 함유(含有)한 단백질(蛋白質) 또는 Guanine, Adenine과 같은 전자공여체(電子供與體)를 함유(含有)한 DNA등(等)과의 Aflatoxin $B_1$의 결합(結合)은 그 결합(結合) Mechanism으로서 Charge-transfer Complex 형성(形成)으로 이루어진다는 추정(推定)을 할 수 있다.

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Adsorbate Interactions of Cu(II) Ion-Exchanged into Mesoporous Aluminosilicate MCM-41 Analyzed by Electron Spin Resonance and Electron Spin Echo Modulation

  • Kim, Jeong-Yeon;Yu, Jong-Sung
    • 한국자기공명학회논문지
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    • 제3권2호
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    • pp.109-126
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    • 1999
  • The location of Cu(II) exchanged into measoporous aluminosilicate MCM-41(AlMCM-41) material and its interaction with various adsorbate molecules were investigated by electron spin resonance and electron spin echo modulation spectroscopies. Cu(II) is fully coordinated to adsorbates in a wide open mesopore of AlMCM-41 for the formation of favorable complexes. It was found that in the fresh hydrated material, Cu(II) is octahedrally coordinated to six water molecules as evidenced by an isotropic room temperature ESR signal. This species is located in a cylindrical MCM-41 channel and rotates rapidly at room temperature. Evacuation at room temperature removes some of these water molecules, leaving the Cu(II) coordinated to less water molecules and anchored to oxygens in an MCM-41 channel wall. Dehydration at 450$^{\circ}C$ produces one Cu(II) species located on the internal wall of a channel, which is easily accessible to adsorbates. Adsorption of adsorbate molecules such as water, methanol, ammonia, pyridine, aniline, acetonitrile, benzene, and ethylene on a dehydrated Cu-AlMCM-41 material causes changes in the ESR spectrum of Cu(II), indicating the complex formation with these adsorbates. Cu(II) forms a complex with six molecules of methanol as evidenced by an isotropic room temperature ESR signal and ESEM analysis like upon water adsorption. Cu(II) also forms a square planar complex containing four molecules of N-containing adsorbates such as ammonia, pyridine and aniline based on resolved nitrogen superhyperfine interaction and their ESR parameters. However, Cu(II) forms a complex with six-molecules of acetonitrile based on ESR parameters. Only one molecule of benzene or ethylene is coordinated to Cu(II).

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Expression of Gpnmb in NK Cell Development from Hematopoietic Stem Cells

  • Shin, Na-Ra;Lee, Ji-Won;Lee, Ji-Won;Jeong, Mi-Ra;Kim, Mi-Sun;Lee, Suk-Hyung;Yoon, Suk-Ran;Chung, Jin-Woong;Kim, Tae-Don;Choi, In-Pyo
    • IMMUNE NETWORK
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    • 제8권2호
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    • pp.53-58
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    • 2008
  • Background: Molecular mechanisms of natural killer (NK) cell development from hematopoietic stem cells (HSCs) have not been clearly elucidated, although the roles of some genes in NK cell development have been reported previously. Thus, searching for molecules and genes related NK cell developmental stage is important to understand the molecular events of NK cell development. Methods: From our previous SAGE data-base, Gpnmb (Glycoprotein non-metastatic melanoma protein B) was selected for further analysis. We confirmed the level of mRNA and protein of Gpnmb through RT-PCR, quantitative PCR, and FACS analysis. Then we performed cell-based ELISA and FACS analysis, to know whether there are some molecules which can bind to Gpnmb. Using neutralizing antibody, we blocked the interaction between NK cells and OP9 cells, and checked IFN-${\gamma}$ production by ELISA kit. Results: Gpnmb expression was elevated during in vitro developmental stage and bound to OP9 cells, but not to NK precursor cells. In addition, we confirmed that the levels of Gpnmb were increased at NK precursor stage in vivo. We confirmed syndecan4 as a candidate of Gpnmb's binding molecule. When the interaction between NK cells and OP9 cells were inhibited in vitro, IFN-${\gamma}$ production from NK cells were reduced. Conclusion: Based on these observations, it is concluded that Gpnmb has a potential role in NK cell development from HSCs.

비수용성 용매를 이용한 탈염화 가능한가?: 적용 가능한 용매선정 기법 제안 (Can Non-aqueous Solvent Desalinate?: Suggestion of the Screening Protocol for Selection of Potential Solvents)

  • 최오경;서준호;김경수;김두일;이재우
    • 한국물환경학회지
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    • 제36권1호
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    • pp.48-54
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    • 2020
  • This paper presents a screening protocol for the selection of solvents available for the solvent extraction desalination process. The desalination solvents hypothetically and theoretically require the capability of (1) Forming hydrogen bonds with water, (2) Absorbing some water molecules into its non-polar solvent layer, (3) Changing solubility for water-solvent separation, and (4) Rejecting salt ions during absorption. Similar to carboxylic acids, amine solvents are solvent chemicals applicable for desalination. The key parameter for selecting the potential solvent was the octanol-water partitioning coefficient (Kow) of which preferable value for desalination was in the range of 1-3. Six of the 30 amine solvents can absorb water and have a variable, i.e., temperature swing solubility with water molecule for water-solvent separation. Also, the hydrogen bonding interaction between solvent and water must be stronger than the ion-dipole interaction between water and salt, which means that the salt ions must be broken from the water and only water molecules absorbed for the desalination. In the final step, three solvents were selected as desalination solvents to remove salt ions and recover water. The water recovery of these three solvents were 15.4 %, 2.8 %, 10.5 %, and salt rejection were 76 %, 98 %, 95 %, respectively. This study suggests a new screening protocol comprising the theoretical and experimental approaches for the selection of solvents for the desalination method which is a new and challenges the desalination process in the future.

저산소증에 의한 활막 섬유모세포의 ICAM-1 발현에 대한 항산화제의 영향 (Effects of Antioxidant on the Hypoxia-induced Expression of ICAM-1 in Cultured Human Synovial Fibroblasts)

  • 김정렬;류완희
    • IMMUNE NETWORK
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    • 제2권1호
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    • pp.25-34
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    • 2002
  • Background: Rheumatoid arthritis (RA) is a chronic inflammatory disease characterized by synovial hyperplasia and joint destruction. The synovial fibroblasts express cell adhesion molecules and have a role in adhesive interation with inflammatory cells in synovial tissue. It has been suggested that hypoxic conditioins are thought to exist in arthritic joints, and several studies indicate that reactive oxygen species (ROS) produced in hypoxic condition can initiate events that lead to pro-adhesive changes via increased expression of adhesion molecules. So, this study wsa designed to examine whether antioxidant can inhibit hypoxia-induced expression of ICAM-1 in cultured human synovial fibroblasts. Methods: Synovial fibroblasts were isolated from synovial tissue in patients with RA and cultured at hypoxic condition. Antioxidant, PDTC (pyrrolidine dithiocarbamate) were pre-treated for an hour before the hypoxic culture and synovial fibroblasts were harvested at 0, 6, 12, 24, 48 hours time points. Cell surface ICAM-1 expression in synovial fibroblasts was examined by the flow cytometric analysis. To analyse the expression of ICAM-1 mRNA, reverse-transcriptase polymerase chain reaction (RT-PCR) was performed. The levels of cytokines in culture supernatants were measured by ELISA, and activation of NF-${\kappa}B$ was analysed by electrophoretic mobility shift assay. The adhesive reaction between synovial fibroblasts and lymphocytes was assayed by measurement of fluorescent intensity of BCECF-AM in lymphocytes. Results: Hypoxic stimuli up-regulated the ICAM-1 expression as well as the adhesive interaction of human synvial fibroblasts to lymphocytes in a time-dependent manner, and PDTC inhibited hpyoxia-induced ICAM-1 expression and cell-cell interaction. PDTC also inhibited the hypoxia-induced activation of intracellular transcription factor, NF-${\kappa}B$. PDTC decreased the amount of hypoxia-induced production of IL-$1{\beta}$ and TNF-${\alpha}$. Conclusion: These studies demonstrate that PDTC inhibit the hypoxia-induced expression of the adhesion molecule, ICAM-1 and activation of NF-${\kappa}B$ in cultured human synovial fibroblasts.

염산과 황산 용액에서 니켈의 부식에 미치는 아미노산의 부식억제효과 (Inhibition Effects of Some Amino Acids on the Corrosion of Nickel in Hydrochloric Acid and Sulfuric Acid)

  • 김연규
    • 대한화학회지
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    • 제59권2호
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    • pp.125-131
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    • 2015
  • 공기를 제거한 상태에서 0.5M HCl과 0.5M $H_2SO_4$ 용액에서 일어나는 니켈의 부식에 대하여 히스티딘 과 메티오닌의 부식억제 효과를 연구하였다. 각 경우에 니켈의 부식은 산화반응 속도가 감소되어 억제되었다. HCl 용액에서 니켈 표면에 일어나는 아미노산의 흡착은 수정된 Langmuir 흡착 등온식을 따르지만, $H_2SO_4$ 용액에서는 흡착된 분자들 간의 상호 작용에 영향을 받아 Temkin의 대수함수 등온식이 잘 적용되었다. HCl 용액에서 흡착되는 히스티딘의 경우만 히스티딘의 {$-NH{_3}{^+}$}, {$-NH^+=$}와 니켈 표면의 {$Ni-Cl^-$}사이의 정전기적 인력에 의해 물리흡착으로, 다른 경우는 Ni의 빈 d-orbital과 히스티딘 또는 메티오닌에 존재하는 비결합 전자쌍 사이에 화학흡착으로 설명할 수 있었다.