• Title/Summary/Keyword: Molecular dumbbell

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Transport Properties of Dumbbell Molecules by Equilibrium Molecular Dynamics Simulations

  • Lee, Song-Hi
    • Bulletin of the Korean Chemical Society
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    • v.25 no.5
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    • pp.737-741
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    • 2004
  • We presents new results for transport properties of dumbbell fluids by equilibrium molecular dynamics (EMD) simulations using Green-Kubo and Einstein formulas. It is evident that the interaction between dumbbell molecules is less attractive than that between spherical molecules which leads to higher diffusion and to lower friction. The calculated viscosity, however, is almost independent on the molecular elongation within statistical error bar, which is contradicted to the Stokes' law. The calculated thermal conductivity increases and then decreases as molecular elongation increases. These results of viscosity and thermal conductivity for dumbbell molecules by EMD simulations are inconsistent with the earlier results of those by non-equilibrium molecular dynamics (NEMD) simulations. The possible limitation of the Green-Kubo and Einstein formulas with regard to the calculations of viscosity and thermal conductivity for molecular fluids such as the missing rotational degree of freedom is pointed out.

Orientation and deformation of FENE dumbbells in confined microchannel and contraction flow geometry

  • Song, Sun-Jin;Kim, Ju-Min;Ahn, Kyung-Hyun;Lee, Seung-Jong;Yeo, Jong-Kee
    • Korea-Australia Rheology Journal
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    • v.19 no.3
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    • pp.147-156
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    • 2007
  • The orientation and deformation of polymer chains in a confined channel flow has been investigated. The polymer chain was modeled as a Finitely Extensible Nonlinear Elastic (FENE) dumbbell. The Brownian configuration field method was extended to take the interaction between the flow and local chain dynamics into account. Drag and Brownian forces were treated as anisotropic in order to reflect the influence of the wall in the confined flow. Both Poiseuille flow and 4 : 1 contraction flow were considered. Of particular interest was molecular tumbling of polymer chains near the wall. It was strongly influenced by anisotropic drag and high shear close to the wall. We discussed the mechanism of this particular behavior in terms of the governing forces. The dumbbell configuration was determined not only by the wall interaction but also by the flow type of the geometric origin. The effect of extensional flow on dumbbell configuration was also discussed by comparing with the Poiseuille flow.

Brownian Dynamics Simulation Study on the Anisotropic FENE Dumbbell Model for Concentrated Polymer Solution and the Melt

  • Sim, Hun Gu;Lee, Chang Jun;Kim, Un Jeon;Bae, Hyeong Seok
    • Bulletin of the Korean Chemical Society
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    • v.21 no.9
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    • pp.875-881
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    • 2000
  • We study the rheological properties of concentrated polymer solution and the melt under simple shear and elon-gational flow using Brownian dynamicssimulation. In order to describe the anisotropic molecular motion, we modifiedthe Giesekus' mobility tensor by incorporating the finitely extensible non-linear elastic (FENE) spring force into dumbbell model. To elucidate the nature of this model, our simulation results are compared with the data of FENE-P ("P"standsfor the Perterin) dumbbell model and experiments. While in steady state both original FENE and FENE-P models exhibit a similar viscosity response,the growthof viscosity becomes dissimilar as the anisotropy decreases and the flowrate increases. The steady state viscosity obtained from the simulation well describes the experiments including the shear-thinning behavior in shear flow and viscosity-thinning behavior in elongational flow. But the growth of viscosity oforiginal FENE dumbbell model cannot describe the experimental results in both flow fields.

Tethered DNA shear dynamics in the flow gradient plane: application to double tethering

  • Lueth, Christopher A.;Shaqfeh, Eric S.G.
    • Korea-Australia Rheology Journal
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    • v.19 no.3
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    • pp.141-146
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    • 2007
  • We examine the wall contact of a $3\;{\mu}m$ tethered DNA chain's free end under shear with a focus on developing schemes for double-tethering in the application of making scaffolds for molecular wires. At this scale our results are found to be highly dependent on small length scale rigidity. Chain-end-wall contact frequency, mean fractional extension deficit upon contact, and standard deviation in extension upon contact are examined for scaling with dimensionless flow strength, Wi. Predictions made using a one dimensional approximation to the Smoluchowski equation for a dumbbell and three dimensional dumbbell simulations produce extension deficit, standard deviation, and frequency scaling exponents of -1/3, -1/3, and 2/3, respectively whereas more fine-grained Kratky-Porod (KP) simulations produce scaling exponents of -0.48, -0.42, and 0.76. The contact frequency scaling of 2/3 is derived from the known results regarding cyclic dynamics Analytical scaling predictions are in agreement with those previously proposed for ${\lambda}-DNA$. [Ladoux and Doyle, 2000, Doyle et al., 2000]. Our results suggest that the differences between the dumbbell and the KP model are associated with the addition of chain discretization and the correct bending potential in the latter. These scaling results will aide future exploration in double tethering of DNA to a surface.

Synthesis and Properties of Biaxial LC from Dumbbell-shaped Molecules

  • Xu, Fei;Choi, E-Joon
    • 한국정보디스플레이학회:학술대회논문집
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    • 2009.10a
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    • pp.651-654
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    • 2009
  • Novel compounds with rod and disc mesogens were synthesized and characterized. The molecular structures were confirmed by FT-IR, $^1H$-NMR spectroscopy and elemental analysis. The optical properties of these molecules were investigated by UV-vis absorption spectroscopy and photo-luminescence spectroscopy. We found that they are a novel series of blue light-emitting molecules. The absorption spectra peaks of these compounds varied from 336 nm-341 nm, while the maximum emissions centered form 410 nm-450 nm in chloroform solution. However, unexpectedly we could not found their biaxiality and mesomorphic properties by POM, conoscopy and DSC method.

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STRUCTURE OF $^{13}CO$ EMISSION AND DISTRIBUTION OF IR IN THE DARK CLOUD L1535

  • LEE YONG BOK;MINN Y. K.
    • Publications of The Korean Astronomical Society
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    • v.14 no.2
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    • pp.79-81
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    • 1999
  • We have made an extensive mapping of the $^{13}CO$ J=1-0 transition line in the dark cloud L1535. We also constructed the $100{\mu}m$ IRAS map in the region. We found a semi-detached cloud component of $^{13}CO$ in the northeast direction of the $^{13}CO$ main cloud which forms a dumbbell-like structure. This additional component with an angular size of $20'\times16'$ has not been observed before in any molecular surveys of the cloud. The IRAS map shows a similar structure with two intensity peaks whose positions coincide with those of the $^{13}CO$ clouds.

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Direct numerical simulations of viscoelastic turbulent channel flows at high drag reduction

  • Housiadas Kostas D.;Beris Antony N.
    • Korea-Australia Rheology Journal
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    • v.17 no.3
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    • pp.131-140
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    • 2005
  • In this work we show the results of our most recent Direct Numerical Simulations (DNS) of turbulent viscoelastic channel flow using spectral spatial approximations and a stabilizing artificial diffusion in the viscoelastic constitutive model. The Finite-Elasticity Non-Linear Elastic Dumbbell model with the Peterlin approximation (FENE-P) is used to represent the effect of polymer molecules in solution, The corresponding rheological parameters are chosen so that to get closer to the conditions corresponding to maximum drag reduction: A high extensibility parameter (60) and a moderate solvent viscosity ratio (0.8) are used with two different friction Weissenberg numbers (50 and 100). We then first find that the corresponding achieved drag reduction, in the range of friction Reynolds numbers used in this work (180-590), is insensitive to the Reynolds number (in accordance to previous work). The obtained drag reduction is at the level of $49\%\;and\;63\%$, for the friction Weissenberg numbers 50 and 100, respectively. The largest value is substantially higher than any of our previous simulations, performed at more moderate levels of viscoelasticity (i.e. higher viscosity ratio and smaller extensibility parameter values). Therefore, the maximum extensional viscosity exhibited by the modeled system and the friction Weissenberg number can still be considered as the dominant factors determining the levels of drag reduction. These can reach high values, even for of dilute polymer solution (the system modeled by the FENE-P model), provided the flow viscoelasticity is high, corresponding to a high polymer molecular weight (which translates to a high extensibility parameter) and a high friction Weissenberg number. Based on that and the changes observed in the turbulent structure and in the most prevalent statistics, as presented in this work, we can still rationalize for an increasing extensional resistance-based drag reduction mechanism as the most prevalent mechanism for drag reduction, the same one evidenced in our previous work: As the polymer elasticity increases, so does the resistance offered to extensional deformation. That, in turn, changes the structure of the most energy-containing turbulent eddies (they become wider, more well correlated, and weaker in intensity) so that they become less efficient in transferring momentum, thus leading to drag reduction. Such a continuum, rheology-based, mechanism has first been proposed in the early 70s independently by Metzner and Lamley and is to be contrasted against any molecularly based explanations.