• Journal of Microbiology and Biotechnology
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• v.19 no.9
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• pp.858-868
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• 2009

The abundance, biomass, size distribution, and taxonomic composition of bacterial and protistan (heterotrophic and autotrophic nanoflagellates and ciliates) communities were investigated in six lakes of Masurian Lake District (north-eastern Poland) differing in trophic state. Samples were taken from the trophogenic water layer during summer stratification periods. Image analysis techniques with fluorescent in situ hybridization (FISH) as well as [$^3H$]-methyl-thymidine incorporation methods were applied to analyze differences in the composition and activity of bacterial communities. The greatest differences in trophic parameters were found between the humic lake and remaining non-humic ones. The same bacterial and heterotrophic nanoflagellate (HNF) cell size classes dominated in all the studied lakes. However, distinct increases in the contributions of large bacterial (>$1.0{\mu}m$) and HNF (>$10{\mu}m$) cells were observed in eutrophic lakes. The bacterial community was dominated by the ${\beta}$-Proteohacteria group, which accounted for 27% of total DAPI counts. Ciliate communities were largely composed of Oligotrichida. Positive correlations between bacteria and protists, as well as between nanoflagellates (both heterotrophic and autotrophic) and ciliates, suggest that concentrations of food sources may be important in determining the abundance of protists in the studied lakes.

• Journal of the korean society of oceanography
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• v.38 no.4
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• pp.185-210
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• 2003

This paper describes and assesses the parameterisation of MP, the microplankton compartment of the carbon­nitrogen microplankton­detritus model. The compartment is 'the microbial loop in a box' and includes pelagic bacteria and protozoa as well as phytoplankton. The paper presents equations and parameter values for the autotroph and microheterotroph components of the microplankton. Equations and parameter values for the microplankton as a whole are derived on the assumption of a constant 'heterotroph fraction'. The autotroph equations of MP allow variation in the ratios of nutrient elements to carbon, and are largely those of the 'cell­quota, threshold­limitation' algal growth model, which can deal with potential control of growth by several nutrients and light. The heterotroph equations, in contrast, assume a constant elemental composition. Nitrogen is used as the limiting nutrient in most of the model description, and is special in that MP links chlorophyll concentration to the autotroph nitrogen quota.

• 한국생태학회:학술대회논문집
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• 1999.05a
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• pp.55-62
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• 1999

Four species of Paraphysomonas collected from the fast- ice covered area Syowa Station, East Ongul Island ($69^{\circ}00'S,\;39^{\circ}35'$) ,Antarctica occurred in the seawater throughout the year and occasionally in the sea ice. P.. antarctica is distributed to a water depth of 35m at 51.3 during the period from August 1983 to January 1984 and also down to 600m St. 5 in September 1983 at cell concentrations of 300-350 cells/ml. The Paraphysomonas spp. were dominant during the period from July to November 1983 in the area studied. The mode of the occurrence and vertical distribution of Paraphysomonas apparently coresponds to those of the bacteria and orgarnic debris-like matter in the seawater. The main components of the plankton population in the area studied, under ice-covered conditions, are Paraphysomonas, Choanoflagellates and bacteria. This work clarified that Paraphysomonas is one o f the most important bacterivores in the microbial loop of the Antarctic marine ecosystem.

• Korean Journal of Ecology and Environment
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• v.39 no.3 s.117
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• pp.378-389
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• 2006

Seasonal changes of biomass and cell size of bacteria and protozoa, and factors affecting their distribution in Lake Paldang and Kyungan Stream were analyzed from April to December, 2005. Bacterial abundance at Paldang Dam and Kyungan Stream was similar, but it did not much increase during hot summer period. Protozoan carbon biomass was much greater at Kyungan Stream compared to Paldang Dam. HNAN generally accounted for the majority of total protozoan biomass, but ciliates made up the highest proportion in April and November at Paldang Dam and June at both sites. PNAN showed low biomass at both sites, but it was high during spring and fall season. Small-sized HNAN ($3{\sim}7\;{\mu}m$) numerically predominated the protozoan community at both sites. Average cell size of HNAN was bigger at Kyungan Stream where nutrients concentration was much higher than Paldang Dam. Average cell size of ciliates varied seasonally; it was relatively small during the summer. HNAN biomass significantly correlated with Chl-a concentration and ciliates biomass at Paldang Dam, indicating that HNAN increase might link to the ciliates increase. At Kyungan Stream, HNAN biomass showed a significant relationship with PNAN biomass, and Chl-a concentration was closely related with both of HNAN and PNAN biomass. Ciliate biomass showed significant relationship with nutrient (TN, TP) and particulate matter (SS) only at Kyungan Stream. At both sites, protozoan biomass was significantly correlated with bacterial biomass, and ciliates were additionally related flagellates. High biomass of microbial components and the close relationships among them suggest that the energy transfer through the microbial loop may important in the plankton food web of Lake Paldang ecosystem.

• Korean Journal of Poultry Science
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• v.45 no.3
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• pp.209-217
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• 2018

The innate immune recognition is based on the detection of microbial products. Toll-like receptors (TLRs) located on the cell surface and the endosome senses microbial components and nucleic acids, respectively. Chicken TLRs mediate immune responses by sensing ligands from pathogens, have been studied as immune adjuvants to increase the efficacy of vaccines. Single nucleotide polymorphisms (SNPs) of TLR3 and TLR4 genes in chicken were associated with resistance and susceptibility to viral infection. In this study, SNPs of chTLR3 and chTLR4 genes were retrieved from public database and annotated with chicken reference genome. Three-dimensional models of the chTLR3 and chTLR4 proteins were built using a Swiss modeler. We identified 35 and 13 nsSNPs in chTLR3 and chTLR4 genes respectively. Sorting Intolerant from Tolerant (SIFT) and Polymorphism Phenotyping v2 (Polyphen-2) analyses, suggested that, out of 35 and 13 nsSNPs, 4 and 2 SNPs were identified to be deleterious in chTLR3 and chTLR4 gene respectively. In chTLR3, 1 deleterious SNP was located in ectodomain and 3 were located in the Toll / IL-1 receptor (TIR) domain. Further structural model of chTLR3-TIR domain suggested that 1 deleterious SNP be present in the B-B loop region, which is important for TIR-TIR domain interactions in the downstream signaling. In chTLR4, the deleterious SNPs were located both in the ectodomain and TIR domain. SNPs predicted for chTLR3 and chTLR4 in this study, might be related to resistance or susceptible to viral infection in chickens. Results from this study will be useful to develop the effective measures in chicken against infectious diseases.