1 |
Amann, R. I., B. J. Binder, R. J. Olson, S. W. Chisholm, R. Devereux, and D. A. Stahl. 1990. Combination of 16S-targeted oligonucleotide probes with flow cytometry for analyzing mixed microbial populations. Appl. Environ. Microbiol. 56: 1919- 1925
PUBMED
ScienceOn
|
2 |
Beaver, J. R. and T. L. Crisman. 1989. Analysis of the community structure of ciliated protozoa relative to trophic state in Florida lakes. Hydrobiologia 174: 177-184
DOI
|
3 |
Carlson, R. E. 1977. A trophic state index for lakes. Limnol. Oceanogr. 22: 361-369
DOI
ScienceOn
|
4 |
Chrost, R. J., M. Koton, and W. Siuda. 2000. Bacterial secondary production and bacterial biomass in four Mazurian Lakes of differing trophic status. Pol. J. Environ. Stud. 9: 255-266
|
5 |
Fenchel, T. 1980. Relation between particle size selection and clearance in suspension feeding ciliates. Limnol. Oceanogr. 25: 733-738
DOI
ScienceOn
|
6 |
Kivi, K. and O. Setälä. 1995. Simultaneous measurement of food particle selection and clearance rates of planktonic oligotrich ciliates (Ciliophora: Oligotrichina). Mar. Ecol. Prog. Ser. 119: 125-137
DOI
|
7 |
Kufel, L. 2001. Uncoupling of chlorophyll and nutrients in lakes - possible reasons, expected consequences. Hydrobiologia 443: 59-67
DOI
ScienceOn
|
8 |
Manz, W., R. Amann, W. Ludwig, M. Wagner, and K.-H. Schleifer. 1992. Phylogenetic oligonucleotide probes for the major subclasses of Proteobacteria: Problems and solutions. Syst. Appl. Microbiol. 15: 593-600
DOI
|
9 |
Manz, W., R. Amann, M. Vancanneyt, and K.-H. Schleifer. 1996. Application of a suite of 16S rRNA-specific oligonucleotide probes designed to investigate bacteria of the phylum Cytophaga- Flavobacter-Bacteroides in the natural environment. Microbiology 140: 2849-2858
DOI
ScienceOn
|
10 |
Munster, U. and R. J. Chrost. 1990. Origin, composition, and microbial utilization of dissolved organic matter, pp. 8-46. In J. Overbeck and R. J. Chrost (eds.). Aquatic Microbial Ecology: Biochemical and Molecular Approaches. Springer Verlag, New York
|
11 |
Neef, A. 1997. PhD Thesis. Anwendynng der in situ; Einzelzellidentifizierung von bakterien zur populationsanalyse in komplexen mikrobiellen biozonosen. Technische Universitat M nchen, Munich, Germany
|
12 |
Pace, M. L., G. B. McManus, and S. E. G. Findlay. 1990. Planktonic community structure determines the fate of bacterial production in a temperate lake. Limnol. Oceanogr. 35: 795- 808
DOI
ScienceOn
|
13 |
Porter, K. G. and Y. S. Feig. 1980. The use of DAPI for identifying and counting aquatic microflora. Limnol. Oceanogr. 25: 943-948
DOI
ScienceOn
|
14 |
Schumann, R., U. Schiewer, U. Karoten, and T. Rieling. 2003. Viability of bacteria from different aquatic habitats. II. Cellular fluorescent markers for membrane integrity and metabolic activity. Aquat. Microb. Ecol. 32: 137-150
|
15 |
Simek, K., M. Macek, J. Seda, and V. Vyhnalek. 1990. Possible food chain relationships between bacterioplankton, protozoans and cladocerans in a reservoir. Int. Revue ges. Hydrobiol. 75: 583-596
DOI
|
16 |
Muylaert, K., K. Van der Gucht, N. Vloemans, L. De Meester, M. Gillis, and W. Vyverman. 2002. Relationship between bacterial community composition and bottom-up versus topdown variables in four eutrophic shallow lakes. Appl. Environ. Microbiol. 68: 4740-4750
DOI
ScienceOn
|
17 |
Simek, K., J. Armengol, M. Comerma, J.-C. Garcia, T. H. Chrzanowski, M. Macek, J. Nedoma, and V. Straskrabova. 1998. Characteristics of protistan control of bacterial production in three reservoirs of different trophy. Int. Rev. Hydrobiol. 83: 485-494
|
18 |
Hitchman, R. B. and H. L. J. Jones. 2000. The role of mixotrophic protists in the population dynamics of the microbial food web in a small artificial pond. Freshwater Biol. 43: 231- 241
DOI
ScienceOn
|
19 |
del Giorgio, P. A. and G. Scarborough. 1995. Increase in the proportion of metabolically active bacteria along gradients of enrichment in freshwater and marine plankton: Implications on estimates of bacterial growth and production rates. J. Plankton Res. 17: 1905-1924
DOI
ScienceOn
|
20 |
Koroleff, F. 1983. Determination of phosphorus. Chemistry of the element in seawater, pp. 125-139. In K. Grasshoff, M. Erhardt, and K. Kremling (eds.), Methods of Seawater Analysis. Verlag Chemie, Weinheim
|
21 |
Putt, M. and D. K. Stoecker. 1989. An experimentally determined carbon: Volume ratio for marine 'oligotrichous' ciliates from estuarine and coastal waters. Limnol. Oceanogr. 34: 1097-1103
DOI
ScienceOn
|
22 |
Schafer, H., L. Bernard, C. Courties, P. Lebaron, P. Servais, R. Pukall, et al. 2001. Microbial community dynamics in Mediterranean nutrient-enriched seawater mesocosms: Changes in the genetic diversity of bacterial populations. FEMS Microbiol. Ecol. 34: 243-253
PUBMED
ScienceOn
|
23 |
Kalinowska, K. 2004. Bacteria, nanoflagellates and ciliates as components of the microbial loop in three lakes of different trophic status. Pol. J. Ecol. 52: 19-34
|
24 |
Pearce, D. A., C. J. Van der Gast, K. Woodward, and K. K. Newsham. 2005. Significant changes in the bacterioplankton community structure of a maritime Antarctic freshwater lake following nutrient enrichment. Microbiology 151: 3237-3248
DOI
ScienceOn
|
25 |
Pernthaler, J., B. Sattler, K. Šimek, A. Schwarzenbacher, and R. Pssener. 1996. Top-down effects on the size-biomass distribution of a freshwater bacterioplankton community. Aquat. Microb. Ecol. 10: 255-263
DOI
ScienceOn
|
26 |
Beaver, J. R. and T. L. Crisman. 1982. The trophic response of ciliated protozoans in freshwater lakes. Limnol. Oceanogr. 27: 246-253
DOI
ScienceOn
|
27 |
Jezbera, J., K. Hor ak, and K. Simek. 2006. Prey selectivity of bacterivorous protists in different size fractions of reservoir water amended with nutrients. Environ. Microbiol. 8: 1330- 1339
DOI
ScienceOn
|
28 |
Pernthaler, J., F.-O. Gl ckner, W. Schonhuber, and R. Amann. 2001. Fluorescence in situ hybridization with rRNA-targeted oligonucleotide probes. Methods Microbiol. 30: 207-226
DOI
|
29 |
Chrost, R. J. and H. Rai. 1994. Bacterial secondary production, pp. 92-117. In J. Overbeck and R. J. Chrost (eds.), Microbial Ecology of Lake Plu see. Springer Verlag
|
30 |
Domaizon, I., S. Viboud, and D. Fontvieille. 2003. Taxon-specific and seasonal variations in flagellates grazing on heterotrophic bacteria in the oligotrophic Lake Annecy - importance of mixotrophy. FEMS Microbiol. Ecol. 46: 317-329
DOI
ScienceOn
|
31 |
Weisse, T. 1991. The annual cycle of heterotrophic freshwater nanoflagellates: Role of bottom-up versus top-down control. J. Plankton Res. 13: 167-185
DOI
|
32 |
B rsheim, K. Y. and G. Bratbak. 1987. Cell volume to cell carbon conversion factors for a bacterivorous Monas sp. enriched from sea water. Mar. Ecol. Prog. Ser. 36: 171-175
DOI
|
33 |
Porter, K. G., E. B. Sherr, B. F. Sherr, M. Pace, and R. W. Sanders. 1985. Protozoa in planktonic food webs. J. Protozool. 32: 409-415
|
34 |
Jardillier, L., M. Basset, I. Domaizon, A. Belan, C. Amblard, M. Richardot, and D. Debroas. 2004. Bottom-up and top-down control of bacterial community composition in the euphotic zone of a reservoir. Aquat. Microb. Ecol. 35: 259-273
DOI
ScienceOn
|
35 |
Jezbera, J., K. Hor ak, and K. Simek. 2005. Food selection by bacterivorous protists: Insight from the analysis of the food vacuole content by means of fluorescence in situ hybridization. FEMS Microbiol. Ecol. 52: 351-363
DOI
ScienceOn
|
36 |
Lee, S. and J. A. Fuhrman. 1987. Relationships between biovolume and biomass of naturally derived marine bacterioplankton. Appl. Environ. Microbiol. 53: 1298-1303
PUBMED
ScienceOn
|
37 |
Pernthaler, J., E. Zollner, F. Warnecke, and K. Jürgens. 2005. Bloom of filamentous bacteria in a mesotrophic lake: Identity and potential controlling mechanism. Appl. Environ. Microbiol. 70: 6272-6281
DOI
ScienceOn
|
38 |
Lebaron, P., P. Servais, M. Troussellier, C. Courties, G. Muyzer, L. Bernard, et al. 2001. Microbial community dynamics in Mediterranean nutrient-enriched seawater mesocosms: Changes in abundances, activity and composition. FEMS Microbiol. Ecol. 34: 255-266
DOI
ScienceOn
|
39 |
del Giorgio, P. A., J. M. Gasol, D. Vaqu, P. Mura, S. Agusti, and C. M. Duarte. 1996. Bacterioplankton community structure: Protists control net production and the proportion of active bacteria in a coastal marine community. Limnol. Oceanogr. 41: 1169-1179
DOI
ScienceOn
|
40 |
Sanders, R. W., D. A. Caron, and U. G. Berninger. 1992. Relationships between bacteria and heterotrophic nanoplankton in marine and fresh waters: An inter-ecosystem comparison. Mar. Ecol. Prog. Ser. 86: 1-14
DOI
ScienceOn
|
41 |
Sanders, R. W., K. G. Porter, S. J. Bennett, and A. E. Debiase. 1989. Seasonal patterns of bacterivory by flagellates, ciliates, rotifers, and cladocerans in freshwater planktonic community. Limnol. Oceanogr. 34: 673-687
DOI
ScienceOn
|
42 |
Lindstrom, E. S. 2000. Bacterioplankton community composition in five lakes differing in trophic status and humic content. Microb. Ecol. 40: 104-113
PUBMED
ScienceOn
|
43 |
Auer, B. and H. Arndt. 2001. Taxonomic composition and biomass of heterotrophic flagellates in relation to lake trophy and season. Freshwater Biol. 46: 959-972
DOI
ScienceOn
|
44 |
Chr st, R. J. and M. A. Faust. 1999. Consequences of solar radiation on bacterial secondary production and growth rates in subtropical coastal water (Atlantic Coral Reef off Belize, Central America). Aquat. Microb. Ecol. 20: 39-48
DOI
ScienceOn
|
45 |
Goldman, J. C., D. A. Caron, O. K. Andersen, and M. R. Dennet. 1985. Nutrient cycling in a microflagellate food chain: I. Nitrogen dynamics. Mar. Ecol. Prog. Ser. 24: 231-242
DOI
|
46 |
Arrar, E. J. and G. B. Collins. 1997. Method 445.0. In vitro determination of chlorophyll a and phenophytin a in marine and freshwater algae by fluorescence. National Exposure Research Laboratory. Office of Research and Development. U.S. Environmental Protection Agency
|
47 |
Chrost, R. J. and W. Siuda. 2006. Microbial production, utilization, and enzymatic degradation of organic matter in the upper trophogenic layer in the pelagial zone of lakes along a eutrophication gradient. Limnol. Oceanogr. 51: 749-762
DOI
ScienceOn
|
48 |
Foissner, W., H. Berger, and J. Schaumburg. 1999. Identification and ecology of limnetic plankton ciliates. Bayerisches. Landesamt f r Wasserwirtschaft, M nchen
|
49 |
Jurgens, K., J. Pernthaler, S. Schalla, and R. Amann. 1999. Morphological and compositional changes in planktonic bacterial community in response to enhanced protozoan grazing. Appl. Environ. Microbiol. 65: 1241-1250
PUBMED
|
50 |
Pace, M. L. 1986. An empiricial analysis of zooplankton community structure across lake trophic gradients. Limnol. Oceanogr. 31: 45-55
DOI
ScienceOn
|
51 |
Hahn, M. W., E. R. B. Moore, and M. G. Höfle. 1999. Bacterial filament formation, a defense mechanism against flagellate grazing, is growth rate-controlled in bacteria of different phyla. Appl. Environ. Microbiol. 65: 25-35
PUBMED
ScienceOn
|
52 |
Wallner, G., R. Amann, and W. Beisker. 1993. Optimizing fluorescent in situ hybridization with rRNA-targeted oligonucleotide probes for flow cytometric identification of microorganisms. Cytometry 14: 136-143
DOI
ScienceOn
|
53 |
Hahn, M. W. and M. G. Hofle. 2001. Grazing of protozoa and its effect on populations of aquatic bacteria. FEMS Microbiol. Ecol. 35: 113-121
DOI
ScienceOn
|
54 |
Jurgens, K. and G. Stolpe. 1995. Seasonal dynamics of crustacean zooplankton, heterotrophic nanoflagellates and bacteria in a shallow, eutrophic lake. Freshwater Biol. 33: 27-38
DOI
ScienceOn
|
55 |
Skowro ska, A. 2007. Distribution of microbial-selected populations in Lake North Mamry by fluorescent in situ hybridization. Pol. J. Environ. Stud. 16: 123-128
|
56 |
Koton-Czarnecka, M. and R. J. Chrost. 2003. Protozoans prefer large and metabolically active bacteria. Pol. J. Environ. Stud. 12: 325-334
|
57 |
Simek, K., J. Bobkova, M. Macek, J. Nedoma, and R. Psenner. 1995. Ciliate grazing on picoplankton in eutrophic reservoir during summer phytoplankton maximum: A study at the species and community level. Limnol. Oceanogr. 40: 1077-1090
DOI
ScienceOn
|
58 |
Pernthaler, A., C. M. Prestom, J. Pernthaler, E. F. Delong, and
R. Amann. 2002. A comparison of fluorescently labeled
oligonucleotide and polynucleotide probes for detection of
pelagic marine bacteria and Archaea. Appl. Environ. Microbiol.
68: 661-667
DOI
ScienceOn
|
59 |
Psenner, R. 1993. Determination of size and morphology of aquatic bacteria by automated image analysis. pp. 339-345. In P. F. Kemp, B. F. Sherr, E. B. Sherr, and J. J. Cole (eds.),
Handbook of Methods in Aquatic Microbial Ecology. Lewis Publishers, Boca Raton, FL
|
60 |
Gonzalez, J. M., E. B. Sherr, and B. F. Sherr. 1993. Differential feeding by marine flagellates on growing versus starving and on motile versus nonmotile bacterial prey. Mar. Ecol. Prog. Ser. 102: 257-267
DOI
|