• Title/Summary/Keyword: MaxENT

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Selection of Optimal Models for Predicting the Distribution of Invasive Alien Plants Species (IAPS) in Forest Genetic Resource Reserves (산림생태계 보호구역에서 외래식물 분포 예측을 위한 최적 모형의 선발)

  • Lim, Chi-hong;Jung, Song-hie;Jung, Su-young;Kim, Nam-shin;Cho, Yong-chan
    • Korean Journal of Environment and Ecology
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    • v.34 no.6
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    • pp.589-600
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    • 2020
  • Effective conservation and management of protected areas require monitoring the settlement of invasive alien species and reducing their dispersion capacity. We simulated the potential distribution of invasive alien plant species (IAPS) using three representative species distribution models (Bioclim, GLM, and MaxEnt) based on the IAPS distribution in the forest genetic resource reserve (2,274ha) in Uljin-gun, Korea. We then selected the realistic and suitable species distribution model that reflects the local region and ecological management characteristics based on the simulation results. The simulation predicted the tendency of the IAPS distributed along the linear landscape elements, such as roads, and including some forest harvested area. The statistical comparison of the prediction and accuracy of each model tested in this study showed that the GLM and MaxEnt models generally had high performance and accuracy compared to the Bioclim model. The Bioclim model calculated the largest potential distribution area, followed by GLM and MaxEnt in that order. The Phenomenological review of the simulation results showed that the sample size more significantly affected the GLM and Bioclim models, while the MaxEnt model was the most consistent regardless of the sample size. The optimal model overall for predicting the distribution of IAPS among the three models was the MaxEnt model. The model selection approach based on detailed flora distribution data presented in this study is expected to be useful for efficiently managing the conservation areas and identifying the realistic and precise species distribution model reflecting local characteristics.

Prediction of Potential Habitat and Damage Amount of Rare·Endemic Plants (Sophora Koreensis Nakai) Using NBR and MaxEnt Model Analysis - For the Forest Fire Area of Bibongsan (Mt.) in Yanggu - (NBR과 MaxEnt 모델 분석을 활용한 희귀특산식물(개느삼) 분포 및 피해량 예측 - 양구 비봉산 산불피해지를 대상으로-)

  • Yun, Ho-Geun;Lee, Jong-Won;An, Jong-Bin;Yu, Seung-Bong;Bak, Gi-Ppeum;Shin, Hyun-Tak;Park, Wan-Geun;Kim, Sang-Jun
    • Korean Journal of Plant Resources
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    • v.35 no.2
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    • pp.169-182
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    • 2022
  • This study was conducted to predict the distribution of rare·endemic plants (Sophora koreensis Nakai) in the border forests where wildfire damage occurred and to quantify the damage. For this purpose, we tried to derive more accurate results through forest area damage (NBR) according to the Burn severity of wildfires, damage by tree species type (Vegetation map), and MaxEnt model. For Burn severity analysis, satellite imagery (Landsat-8) was used to analyze Burn severity (ΔNBR2016-2015) and to derive the extent of damage. To prepare the Vegetation map, the land cover map prepared by the Ministry of Environment, the Vegetation map prepared by the Korea Forest Service, and the vegetation survey conducted by itself were conducted to prepare the clinical map before and after the forest fire. Lastly, for MaxEnt model analysis, the AUC value was derived by using the habitat coordinates of Sophora koreensis Nakai based on the related literature and self-report data. As a result of combining the Maxent model analysis data with the Burn severity data, it was confirmed that 45.9% of the 44,760 m2 of habitat (predicted) area of Sophora koreensis Nakai in the wildfire damaged area or 20,552 m2, was damaged.

New record of a blood-feeding terrestrial leech, Haemadipsa rjukjuana Oka, 1910 (Haemadipsidae, Arhynchobdellida) on Heuksando Island and possible habitat estimation in the current and future Korean Peninsula using a Maxent model

  • Tae-Yeong Eom;Hyeon-Soo Kim;Yeong-Seok Jo
    • Journal of Species Research
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    • v.12 no.1
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    • pp.109-113
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    • 2023
  • To build a distribution model for Haemadipsa rjukjuana, we collected current occurrences of the species on Heuksando with adjacent islands. Based on current locations and 19 climate variables with DEM (digital elevation model), we built the MaxEnt (maximum entropy) species distribution model for H. rjukjuana in the islands. Then, we applied the MaxEnt model to the mainland of Korea with the current climate condition and topology. In addition to the current distribution scenario, we predicted the future distribution scenarios in Korea by Coupled Model Intercomparison Project Phase 6 (CMIP6) global climate models. Shared Socioeconomic Pathway (SSP) 585 of two CMIP6 models(GISS-E2-1 and INM-CM4-8) from 2040 to 2100 were used for the future projection.

Predicting Potential Habitat for Hanabusaya Asiatica in the North and South Korean Border Region Using MaxEnt (MaxEnt 모형 분석을 통한 남북한 접경지역의 금강초롱꽃 자생가능지 예측)

  • Sung, Chan Yong;Shin, Hyun-Tak;Choi, Song-Hyun;Song, Hong-Seon
    • Korean Journal of Environment and Ecology
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    • v.32 no.5
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    • pp.469-477
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    • 2018
  • Hanabusaya asiatica is an endemic species whose distribution is limited in the mid-eastern part of the Korean peninsula. Due to its narrow range and small population, it is necessary to protect its habitats by identifying it as Key Biodiversity Areas (KBAs) adopted by the International Union for Conservation of Nature (IUCN). In this paper, we estimated potential natural habitats for H. asiatica using maximum entropy model (MaxEnt) and identified candidate sites for KBA based on the model results. MaxEnt is a machine learning algorithm that can predict habitats for species of interest unbiasedly with presence-only data. This property is particularly useful for the study area where data collection via a field survey is unavailable. We trained MaxEnt using 38 locations of H. asiatica and 11 environmental variables that measured climate, topography, and vegetation status of the study area which encompassed all locations of the border region between South and North Korea. Results showed that the potential habitats where the occurrence probabilities of H. asiatica exceeded 0.5 were $778km^2$, and the KBA candidate area identified by taking into account existing protected areas was $1,321km^2$. Of 11 environmental variables, elevation, annual average precipitation, average precipitation in growing seasons, and the average temperature in the coldest month had impacts on habitat selection, indicating that H. asiatica prefers cool regions at a relatively high elevation. These results can be used not only for identifying KBAs but also for the reference to a protection plan for H. asiatica in preparation of Korean reunification and climate change.

Predicting the Potential Habitat and Risk Assessment of Amaranthus patulus using MaxEnt (Maxent를 활용한 가는털비름(Amaranthus patulus)의 잠재서식지 예측 및 위험도 평가)

  • Lee, Yong Ho;Na, Chea Sun;Hong, Sun Hea;Sohn, Soo In;Kim, Chang Suk;Lee, In Yong;Oh, Young Ju
    • Korean Journal of Environmental Biology
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    • v.36 no.4
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    • pp.672-679
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    • 2018
  • This study was conducted to predict the potential distribution and risk of invasive alien plant, Amaranthus patulus, in an agricultural area of South Korea. We collected 254 presence localities of A. patulus using field survey and literature search and stimulated the potential distribution area of A. patulus using maximum entropy modeling (MaxEnt) with six climatic variables. Two different kinds of agricultural risk index, raster risk index and regional risk index, were estimated. The 'raster risk index' was calculated by multiplying the potential distribution by the field area in $1{\times}1km$ and 'regional risk index' was calculated by multiplying the potential distribution by field area proportion in the total field of South Korea. The predicted potential distribution of A. patulus was almost matched with actual presence data. The annual mean temperature had the highest contribution for distribution modeling of A. patulus. Area under curve (AUC) value of the model was 0.711. The highest regions were Gwangju for potential distribution, Jeju for 'raster risk index' and Gyeongbuk for 'regional risk index'. This different ranks among the index showed the importance about the development of various risk index for evaluating invasive plant risk.

Analysis and estimation of species distribution of Mythimna seperata and Cnaphalocrocis medinalis with land-cover data under climate change scenario using MaxEnt (MaxEnt를 활용한 기후변화와 토지 피복 변화에 따른 멸강나방 및 혹명나방의 한국 내 분포 변화 분석과 예측)

  • Taechul Park;Hojung Jang;SoEun Eom;Kimoon Son;Jung-Joon Park
    • Korean Journal of Environmental Biology
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    • v.40 no.2
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    • pp.214-223
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    • 2022
  • Among migratory insect pests, Mythimna seperata and Cnaphalocrocis medinalis are invasive pests introduced into South Korea through westerlies from southern China. M. seperata and C. medinalis are insect pests that use rice as a host. They injure rice leaves and inhibit rice growth. To understand the distribution of M. seperata and C. medinalis, it is important to understand environmental factors such as temperature and humidity of their habitat. This study predicted current and future habitat suitability models for understanding the distribution of M. seperata and C. medinalis. Occurrence data, SSPs (Shared Socio-economic Pathways) scenario, and RCP (Representative Concentration Pathway) were applied to MaxEnt (Maximum Entropy), a machine learning model among SDM (Species Distribution Model). As a result, M. seperata and C. medinalis are aggregated on the west and south coasts where they have a host after migration from China. As a result of MaxEnt analysis, the contribution was high in the order of Land-cover data and DEM (Digital Elevation Model). In bioclimatic variables, BIO_4 (Temperature seasonality) was high in M. seperata and BIO_2 (Mean Diurnal Range) was found in C. medinalis. The habitat suitability model predicted that M. seperata and C. medinalis could inhabit most rice paddies.

Study of the Derive of Core Habitats for Kirengeshoma koreana Nakai Using HSI and MaxEnt (HSI와 MaxEnt를 통한 나도승마 핵심서식지 발굴 연구)

  • Sun-Ryoung Kim;Rae-Ha Jang;Jae-Hwa Tho;Min-Han Kim;Seung-Woon Choi;Young-Jun Yoon
    • Korean Journal of Environment and Ecology
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    • v.37 no.6
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    • pp.450-463
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    • 2023
  • The objective of this study is to derive the core habitat of the Kirengeshoma koreana Nakai utilizing Habitat Suitability Index (HSI) and Maximum Entropy (MaxEnt) models. Expert-based models have been criticized for their subjective criteria, while statistical models face difficulties in on-site validation and integration of expert opinions. To address these limitations, both models were employed, and their outcomes were overlaid to derive the core habitat. Five variables were identified through a comprehensive literature review and spatial analysis based on appearance coordinates. The environmental variables encompass vegetation zone, forest type, crown density, annual precipitation, and effective soil depth. Through surveys involving six experts, importance rankings and SI (Suitability Index) scores were established for each variable, subsequently facilitating the creation of an HSI map. Using the same variables, the MaxEnt model was also executed, resulting in a corresponding map, which was merged to construct the definitive core habitat map. Out of 16 observed locations of K. koreana, 15 were situated within the identified core habitat. Furthermore, an area historically known to host K. koreana but not verified in the present, Mt. Yeongchwi, was found to lack a core habitat. These findings suggest that the developed models exhibit a high degree of accuracy and effectively reflect the current ecological landscape.

Prediction of Changes in Potential Distribution of Warm-Temperate and Subtropical Trees, Myrica rubra and Syzygium buxifolium in South Korea (남한에서 기후변화에 따른 난아열대 목본식물, Myrica rubra와 Syzygium buxifolium의 잠재분포 변화 예측)

  • Eun-Young, Yim;Hyun-kyu, Won;Jong-Seo, Won;Dana, Kim;Hyungjin, Cho
    • Ecology and Resilient Infrastructure
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    • v.9 no.4
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    • pp.282-289
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    • 2022
  • Analyzing the impact of climate change on the Korean Peninsula on the forest ecosystem is important for the management of subtropical forest bioresources. In this study, we collected location data and bioclimatic variables of the warm-temperate woody plant species, Myrica rubra and Cyzygium buxifolium, and applied the MaxEnt model based on the collected data to estimate the potential distribution area. Precipitation and temperature seasonality in the warmest quarter were the main environmental factors that determined the distribution of M. rubra, and the main environmental factors for S. buxifolium were precipitation in the warmest quarter and precipitation in the wettest quarter. The results of the MaxEnt model by administrative district, the M. rubra showed an area increase rate of 4.6 - 17.7% in the SSP2-4.5 climate change scenario and 13.8 - 30.5% in the SSP5-8.5 climate change scenario. S. buxifolium showed area increase rates of 4.8 - 32.2% in the SSP2-4.5 climate change scenario and 12.9 - 48.6% in the SSP5-8.5 climate change scenario. This study is meaningful in establishing a database and identifying future potential distribution areas of warm and subtropical plants by applying climate change scenarios.

Real-time Acquisition of Three Dimensional NMR Spectra by Non-uniform Sampling and Maximum Entropy Processing

  • Jee, Jun-Goo
    • Bulletin of the Korean Chemical Society
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    • v.29 no.10
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    • pp.2017-2022
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    • 2008
  • Of the experiments to shorten NMR measuring time by sparse sampling, non-uniform sampling (NUS) is advantageous. NUS miminizes systematic errors which arise due to the lack of samplings by randomization. In this study, I report the real-time acquisition of 3D NMR data using NUS and maximum-entropy (MaxEnt) data processing. The real-time acquisition combined with NUS can reduce NMR measuring time much more. Compared with multidimensional decomposition (MDD) method, which was originally suggested by Jaravine and Orekhov (JACS 2006, 13421-13426), MaxEnt is faster at least several times and more suitable for the realtime acquisition. The designed sampling schedule of current study makes all the spectra during acquisition have the comparable resulting resolutions by MaxEnt. Therefore, one can judge the quality of spectra easily by examining the intensities of peaks. I report two cases of 3D experiments as examples with the simulated subdataset from experimental data. In both cases, the spectra having good qualitie for data analysis could be obtained only with 3% of original data. Its corresponding NMR measuring time was 8 minutes for 3D HNCO of ubiquitin.