• ALGAE
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• v.26 no.4
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• pp.333-342
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• 2011

Macroalgae are important primary producers in marine ecosystem. They don't only play an important role as bioindicators but also provide economic resources for humans. Seasonal and vertical variations in seaweed species composition and biomass were examined to determine the ecological status of seaweed beds around Udo, near Jeju Island. We obtained samples at two sites in the high-intertidal to subtidal zones using the quadrat method between June 2010 and May 2011. A total of 262 species were collected, including 31 green, 61 brown, and 170 red algae. The composition of algal species revealed a decrease in species growing in cold water in comparison with the list 20 years ago. The macroalgal mean biomass (g wet wt $m^{-2}$) was 3,476 g and 2,393 g from the two sites, respectively. Ecklonia cava had the greatest biomass at both sites. The seasonal dominant species by biomass at site 1 from the low-intertidal to 1-3 m depth of the subtidal zone was mostly comprised of thick-leathery form, such as Sargassum hemiphyllum, S. coreanum, and Ecklonia cava, whereas site 2 was comprised of the turf form, such as Chondrophycus intermedius, Chondracanthus intermedius, Dictyopteris prolifera, and Gelidium elegans. The current ecological status of the seaweed community in Udo is stable based on diversity and dominance indices.

• Journal of Microbiology and Biotechnology
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• v.26 no.12
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• pp.2127-2137
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• 2016

A mangrove microbial community was analyzed at the gene and protein levels using metagenomic and proteomic methods with the green macroalgae Enteromorpha prolifera as the substrate. Total DNA was sequenced on the Illumina HiSeq 2000 PE-100 platform. Two-dimensional gel electrophoresis in combination with liquid chromatography tandem mass spectrometry was used for proteomic analysis. The metagenomic data revealed that the orders Pseudomonadales, Rhizobiales, and Sphingomonadales were the most prevalent in the mangrove microbial community. By monitoring changes at the functional level, proteomic analyses detected ATP synthase and transporter proteins, which were expressed mainly by members of the phyla Proteobacteria and Bacteroidetes. Members of the phylum Proteobacteria expressed a high number of sugar transporters and demonstrated specialized and efficient digestion of various glycans. A few glycoside hydrolases were detected in members of the phylum Firmicutes, which appeared to be the main cellulose-degrading bacteria. This is the first report of multiple "omics" analysis of E. prolifera degradation. These results support the fact that key enzymes of glycoside hydrolase family were expressed in large quantities, indicating the high metabolic activity of the community.

• ALGAE
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• v.34 no.2
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• pp.91-97
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• 2019

Chilean species of marine macroalgae with amphitropical distributions oftentimes result from introductions out of the Northern Hemisphere. This possibility was investigated using haplotype data in an amphitropical red macroalgae present in Chile, Callophyllis variegata. Published sequence records from Canada and the United States were supplemented with new collections from Chile (April 2014-November 2015). Specimens of C. variegata were amplified for the 5′ end of the cytochrome c oxidase subunit I gene (COI-5P) and the full length nuclear internal transcribed spacer region. Haplotype networks and biogeographic distributions were used to infer whether C. variegata was introduced between hemispheres, and several population parameters were estimated using IMa2 analyses. C. variegata displayed a natural amphitropical distribution, with an isolation time of approximately 938 ka between hemispheres. It is hypothesized that contemporary populations of C. variegata were established from a refugial population during the late Pleistocene, and may have crossed the tropics via rafting on buoyant species of kelp or along deep-water refugia coincident with global cooling, representing a rare case of a non-human mediated amphitropical distribution.

• Ocean and Polar Research
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• v.32 no.4
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• pp.351-359
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• 2010

This study examined extensive patches of floating green macroalgal (Ulva prolifera) mats in the northern East China Sea (ECS) using satellite images from mid May through July 2008 and field observation made during early August 2008 cruise. It was previously reported that the massive macroalgal blooms occurred in the coastal areas of Qingdao in China. During our field survey, researchers noticed widely distributed floating patches of macroalgal mats ranging in size from tens of centimeters to a few hundred meters in diameter. Meteorological data in the northern ECS showed high irradiance, high air-temperature, and predominant southerly winds in summer. In the study area during the survey period, surface waters were characterized by the Changjiang Diluted Water (CDW) mass, which contained high concentrations of nitrate and phosphate. The internal transcribed spacer (ITS) sequence of U. prolifera found in the northern ECS was the same as those of U. prolifera sampled from Qingdao blooms, suggesting a possibility that U. prolifera found in two regions would be derived from the same origin. We suggest that U. prolifera in the nearshore Jiangsu Province drifted into the northern ECS and proliferated under favorable meteorological and oceanographic conditions during the summer of 2008.

• Microbiology and Biotechnology Letters
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• v.41 no.1
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• pp.8-16
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• 2013

An agar-hydrolyzing marine bacterium, strain GNUM08120, was isolated from Sargassum fulvellum collected from Yeongil bay of East Sea of Korea. The isolate was Gram-negative, aerobic, motile with single polar flagellum, and grew at 1-10% NaCl, pH 5.0-8.0, and $15-37^{\circ}C$. G+C content and the predominant respiratory quinone were 46.13 mol% and Q-8, respectively. The major cellular fatty acids were Summed feature 3 (24.5%), $C_{16:0}$ (21.7%), and $C_{18:1}{\omega}7c$ (12.5%). Based on 16S rRNA gene sequence similarity and DNA-DNA hybridization analyses, strain GNUM08120 was identified as a novel subspecies of Alteromonas macleodii, designated Alteromonas macleodii subsp. GNUM08120. Production of agarase by strain GNUM08120 was likely repressed by the effect of carbon catabolite repression caused by glucose. The crude agarase prepared from 12-h culture broth of strain GNUM08120 exhibited an optimum pH and temperature for agarase activity at 7.0 and $40^{\circ}C$, respectively. The crude enzyme produced (neo)agarobiose, (neo)agarotetraose, and (neo)agarohexaose as the hydrolyzed product of agarose.

• ALGAE
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• v.21 no.2
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• pp.261-266
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• 2006

The innate soluble polysaccharides and phenolic compounds of marine macroalgae are serious contaminants which interfere with experimental procedures such as restriction enzyme digestion, polymerase chain reaction (PCR) and other enzymatic reactions using extracted DNA samples. The viscous polysaccharides are co-precipitated with DNA samples by isopropanol or ethanol precipitation in conventional experiment. To overcome the problem, a method for the isolation of high molecular weight DNA from Porphyra tenera is developed with the application of diatomaceous earth column. The isolated DNAs by this method were about 50-100 kb in size and could be digested well with restriction enzymes. The nuclease activity seemed to be minimal, and high reproducibility in the arbitrary primed PCR for RAPD analyses was a distinctive feature. These results suggest that this method is very efficient in isolating nucleic acid from macroalgae including Porphyra.

• Ocean and Polar Research
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• v.22 no.1
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• pp.37-43
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• 2000

Epiphytic communities on marine plants of Seychelles (Indian Ocean Island group associated with East Africa) were investigated in January - March of 1989 during the $15^{th}$ biological voyage of the research vessel cademic Alexander Nesmeyanov. A seagrass species, Thalassodendron ciliatum, and macroalgae (Sargassum spp. and Halimeda spp.) were tested for host substrates and biomass of their dominant epiphytes were assessed. Also, in order to understand the effect of shading and nutrient filtering by epiphytes, two series of photosynthetic rates were compared for Th. ciliatum host leaves having 10% and no epiphytes. Total of 84 species of algae and main taxons of benthic animals were identified from three different host plants. An average biomass of the epiphytes on Th. cihiatum was $184.6g\;kg^{-1}$ and dominant species were green alga Halimeda opuntia, red algae Dictyurus occidentalis and Gelidiella myrioclada. These dominant species and their biomass were remarkably varied with depth increment. On Sargassum spp., an average biomass of the epiphytes was $0.18g\;kg^{-1}$ and the maximum biomass was never exceeded $0.16g\;kg^{-1}$. In the case of Halimeda spp. an average biomass of the epiphytes was $8.0g\;kg^{-1}$, and dominant species were Peyssonnelia dubyi, sponges and decapods. Photosynthetic rates of Th. ciliatum were significantly reduced in the leaves having 10% epiphytes (1.72 times lower, t=6.718, p<0.001).

• Journal of Marine Bioscience and Biotechnology
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• v.2 no.2
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• pp.77-80
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• 2007

Macroalgal tissues can be used as indicating materials for environmental assessment using several algal biotechnology techniques. As bioassay test organisms, macroalgal tissues are required as an axenic state for suitable biological indicators. Callus formation and blade regeneration under suitable culture conditions are also useful for the tests. Quantitative method using tetrazolium chloride or $alamarBlue^{TM}$ is devised on a rapid assessment of the seaweed viability. The use of RT-PCR especially differential display technique should provide the means for the detection and isolation of the responding genes induced by the environmental stress. Seaweed thriving in more environmental changes might contain more diverse biologically active substances.

• Journal of Ecology and Environment
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• v.36 no.4
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• pp.347-370
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• 2013

A study on the presence of benthic dinoflagellates in the intertidal zone along the coasts of Jeju Island, Korea was conducted during 2011 and 2012. Identification and taxonomic observations were made of the benthic dinoflagellate samples using light and epifluorescence microscopy. Thirty-seven dinoflagellate taxa belong to five orders, nine families, 18 genera and 30 species, which are new records for Korean waters, were detected in this study. The detailed nomenclature, references, distribution, and illustrations are presented here. The commonly occurring genera were Amphidinium, Coolia, Ostreopsis, Prorocentrum, and Thecadinium. Among the recorded species, 26 were found only in sand sediment, seven in macroalgal samples, and four were found in both sand and macroalgal samples. Of the 37 species, nine were potentially toxic. These results suggest that diversified benthic dinoflagellates including several potentially toxic species occur in sand sediment and macroalgae in the intertidal zone along the coasts of Jeju Island. The morphological features of the identified species were more or less similar to observations made by previous studies in Korea and elsewhere. The presence of known toxic species may indicate a potential risk of toxicity in the marine ecosystem of Jeju Island. The present study can be helpful for further detailed taxonomic, toxicological, molecular phylogenetic studies and may help in the management and conservation of Jeju Island's marine ecosystem.

• Journal of Marine Bioscience and Biotechnology
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• v.12 no.1
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• pp.50-58
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• 2020

Sphacelaria is a filamentous brown algal genus that can be epibiotic on macroalgae, marine plants, and sea turtles. Its important role in benthic ecosystems, exposure to different stressors (e.g., grazing), and use as a model organism make Sphacelaria ideal for assessing physiological responses of organisms to environmental inputs. Single-cell RNA sequencing is a powerful new probe for understanding environmental responses of organisms at the molecular (transcriptome) level, capable of delineating gene regulation in different cell types. In the case of plants, this technique requires protoplasts ("naked" plant cells). The existing protoplast isolation protocols for Sphacelaria use non-commercial enzymes and are low-yielding. This study is the first to report the production of protoplasts from Sphacelaria fusca (Hudson) S.F. Gray, using a combination of commercial enzymes, chelation, and osmolarity treatment. A simple combination of commercial enzymes (cellulase Onozuka RS, alginate lyase, and driselase) with chelation pretreatment and an increased osmolarity (2512 mOsm/L H₂O) gave a protoplast yield of 15.08 ± 5.31 × 10⁴ protoplasts/g fresh weight, with all the Sphacelaria cell types represented. Driselase had no crucial effect on the protoplast isolation. However, the increased osmolarity had a highly significant and positive effect on the protoplast isolation, and chelation pretreatment was essential for optimal protoplast yield. The protocol represents a significant step forward for studies on Sphacelaria by efficiently generating protoplasts suitable for cellular studies, including single-cell RNA sequencing and expression profiling.