• Title/Summary/Keyword: Layer-specific

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PROMOTER METHYLATION OF THE CDH-13 GENE IN THE ORAL SQUAMOUS CELL CARCINOMA (구강 편평상피암종에서 CDH-13 유전자의 promoter methylation에 대한 연구)

  • Lee, Moon-Joo;Han, Se-Jin;Kim, Kyung-Wook
    • Journal of the Korean Association of Oral and Maxillofacial Surgeons
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    • v.34 no.5
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    • pp.525-531
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    • 2008
  • CDH-13(T-cadherin), which is one of a kind among the 20 cadherins, can be found mainly in wall of aorta, neuron, spleen, blood vessel etc. It is also called H-cadherin. This structural difference can explain that CDH-13 is thought to play a key role in maintaining mutual relation between extra and intra-cellular environment rather than in cell adhesion. The main function of CDH-13 is to participate in blood vessel function. Additionally, it is known to regulate cell growth and cell contact inhibition. When cells are proliferating, cell surface perceives other cells so that substance such as CDH-13 can inhibit their growth or proliferation resulting in homeostasis without endless proliferation or invasion of connective tissue boundaries. However, tumor cell itself appears to be different from normal cells' growth, invasion or transmission. Therefore, it can be diagnosed that these characteristics are closely related to expression of CDH-13 in tumor cells. This study is to investigate expression of CDH-13 in SCC and its correlation with promoter methylation. 20 of tissue species for the study are excised and gathered from 20 patients who are diagnosed as SCC in department of OMS, dental hospital, dankook university. To find development of CDH-13 in each tissue samples, immunohistochemical staining, RT-PCR gene analysis and methylation specific PCR are processed. The results are as follows. 1.Immunohistochemical staining: In normal oral squamous epithelial tissue, strong expression of CDH-13 was found in cell plasma membrane of basal cell layer. On the other hand, in case of low-differentiated oral SCC, development of CDH-13 was hardly seen. 2.The development of CDH-13 gene: In 9 of samples, expression of CDH-13 gene could be seen and 2 of them showed low expression compared to the others. And rest of the 11 samples showed no expression of CDH-13 gene. 3.Methylation of CDH-13 gene: Among 9 samples which expressed CDH-13 gene, 7 of them showed unmethylation. In addition, among 11 samples without CDH-13 gene expression, 10 showed methylation. According to the results stated above, promoter methylation were found in 13 samples(65%) among 20 of oral SCC samples. In low-differentiated SCC, suppression of gene expression could be seen accompanying promoter methylation. These phenomenon of gene expression was proved by immunohistochemical investigation. Finally, for development of oral SCC, conclusions can be made that suppression of CDH-13 played a main role and suppression of gene expression was originated from promoter methylation. Considering this, it is expected that suppression of CDH-13 from promoter methylation to be utilized as a good diagnostic marker of oral SCC.

Epidemiological Studies of Avian Paramyxovirus Type 4 and 6 in Commercial Chicken Flocks in Korea

  • Lee, Hae Rim;Koo, Bon-Sang;Jeon, Eun-Ok;Han, Moo-Sung;Min, Kyung-Cheol;Lee, Seung Baek;Bae, Yeonji;Choi, Kang-Seuk;Shin, Jeong-Hwa;Mo, In-Pil
    • Korean Journal of Poultry Science
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    • v.40 no.4
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    • pp.379-388
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    • 2013
  • Avian paramyxovirus (APMV) type 4 and 6 were isolated during an avian influenza (AI) surveillance program of wild birds. This study also conducted experimental infection of wild-bird-origin APMV type 4 and 6 in specific pathogen free (SPF) chickens to study pathogenicity and transmission within domestic flocks. In addition, serological prevalence data of APMV type 4 and 6 in domestic fowls was conducted with chicken sera collected from 2007 to 2009 in order to understand infection status. The results of the animal experiment showed that APMV type 4 and 6 had the ability to infect chickens with sero-conversion and to transmit the virus from infected birds to contacted birds, but showed low pathogenicity. Serological tests revealed that APMV type 4 was widespread in the poultry industry, especially in layer flocks, but the positive rate for APMV type 6 was very low. This study concluded that wild bird-origin APMV type 4 and 6 could infect the chickens by inter-species transmission and the seroprevalence of APMV type 4 was quite high in Korean poultry. However, since almost all the chicken flocks had a high level of antibody titer against APMV type 1, there was possibility of cross reaction between APMV type 1 and 4, which made the interpretations more complicated. In order to understand infection status in the natural environment, additional study is necessary regarding the seroprevalence of APMV type 4 and 6 in the wild bird population.

A Numerical Study on the Effects of Buildings and Topography on the Spatial Distributions of Air Pollutants in a Building-Congested District (건물 밀집 지역에서 대기오염물질 분포에 미치는 건물과 지형의 영향에 관한 수치 연구)

  • Kang, Geon;Kim, Jae-Jin;Lee, Jae-Bum
    • Korean Journal of Remote Sensing
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    • v.36 no.2_1
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    • pp.139-153
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    • 2020
  • Using a computationalfluid dynamics(CFD) model, thisstudy evaluated the representativeness of an air quality monitoring system (AQMS) in an urban area and presented a methodology to determine the suitable AQMS locations for specific purposes. For this, we selected a 1.6 km × 1.6 km area around the Eunpyeong-gu AQMS (AQMS 111181) as a target area. We conducted simulationsfor two emission scenarios (scenario one: air pollutants transported from inflow boundaries, scenario two: air pollutants emitted from roads). Urban airflows were markedly influenced by mountainous terrain located in the northeast and southeast of the target area, and complicated airflow patterns occurred around the buildings. The distributions of air pollutants were dependent on the terrain (mountain) in scenario one, but the road location and building height in scenario 2. We evaluated whether the AQMS could represent the air quality in the target area based on the simulations for two scenarios. The concentrations simulated at the AQMS were similar in magnitude to the layer mean concentrations, which indicated good representativeness for the air quality in the target area. We also suggested which locations were suitable for different measurement purposes (hot spots, clean zones, average zones, shelter zones, equi-background zones).

Using Google Earth for a Dynamic Display of Future Climate Change and Its Potential Impacts in the Korean Peninsula (한반도 기후변화의 시각적 표현을 위한 Google Earth 활용)

  • Yoon, Kyung-Dahm;Chung, U-Ran;Yun, Jin-I.
    • Korean Journal of Agricultural and Forest Meteorology
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    • v.8 no.4
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    • pp.275-278
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    • 2006
  • Google Earth enables people to easily find information linked to geographical locations. Google Earth consists of a collection of zoomable satellite images laid over a 3-D Earth model and any geographically referenced information can be uploaded to the Web and then downloaded directly into Google Earth. This can be achieved by encoding in Google's open file format, KML (Keyhole Markup Language), where it is visible as a new layer superimposed on the satellite images. We used KML to create and share fine resolution gridded temperature data projected to 3 climatological normal years between 2011-2100 to visualize the site-specific warming and the resultant earlier blooming of spring flowers over the Korean Peninsula. Gridded temperature and phonology data were initially prepared in ArcGIS GRID format and converted to image files (.png), which can be loaded as new layers on Google Earth. We used a high resolution LCD monitor with a 2,560 by 1,600 resolution driven by a dual link DVI card to facilitate visual effects during the demonstration.

Research Trends of Forest Liming and the Effects of Liming on Forest Ecosystems (산림 대상 석회 시용의 연구 경향과 산림생태계에 미치는 영향)

  • Kim, Jusub;Chang, Hanna;Roh, Yujin;Han, Seung Hyun;Son, Yowhan
    • Korean Journal of Environmental Biology
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    • v.36 no.1
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    • pp.50-61
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    • 2018
  • The current study aimed to review the research trends on forest liming by age, country, and research topics, and seeks to summarize the effects of forest liming on soil, vegetation and water system in forest ecosystems. The recent goals of forest liming have been changed in response to changes in the acid deposition, and related studies have been mainly carried out in Europe and North America, where there is noted a massive forest decline, which was subsequently caused by acid rain. Most forest liming studies are noted to have focused on soil responses, however, the number of studies on the responses of vegetation and water system according to a literature review on the subject were relatively small. Meanwhile, forest liming influenced whole forest ecosystems through interaction between the soil, vegetation and water system as associated with the relevant regions. The changes in soil pH, base saturation, and cation exchange capacity by forest liming were noted as different depending on the soil layer and elapsed time after liming. The responses of vegetation to forest liming were shown in above- and below-ground plant growth and plant nutrient concentration, and also were noted to have varied depending on the available regional plant species and noted specific soil conditions. The chemical properties of the water system were changed similarly to those in the soil, leading to notable changes as seen in the planktons and available fish species in the region. Finally, these results could be used to plan further studies on forest liming, which would significantly benefit regional studies to promote the preservation of the species noted for protection in the region.

Engineering Properties of Sewage Sludge Landfill Ground in Nanji-Do (난지도 하수슬러지 매립지반의 공학적 특성)

  • Song, Young-Suk;Yun, Jung-Mann
    • The Journal of Engineering Geology
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    • v.17 no.1 s.50
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    • pp.125-133
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    • 2007
  • The environmental and geotechnical properties are investigated to the 8th landfill area made of only sewage sludge in Nanji-Do. To do this, the soils are sampled in this area, and leaching tests, heavy metal content tests, and so on are performed to research the environmental properties. As the result of heavy metal content tests, Pb, Zn, Cu, Ni, Cd and Cr were leached from the sewage sludge. Because the leaching concentration of Cu is more than the standard value of California state, Cu content have to bring down during the recycling of the sewage sludge. Meanwhile, a series of tests concerning specific gravity, liquid and plastic limits, compaction, permeability and shear strength is performed to research the geotechnical properties. The sewage sludge is consisted of sand, silt and clay, and is classified into non-organic silt or organic clay with 42.3% of plastic index. As the result of compaction test, it is expected that the compaction effect according to variation of water contents is low relatively because the dry unit weight is low and the curve of compaction forms flatness. Also, as the result of direct shear tests, the cohesion is $0.058kg/cm^2$, and the internal friction angle is $14^{\circ}$. Taking everything into consideration, the various problems are happening in case of recycling the sludge like the cover layer of landfill and so on because the compaction is bad, and the shear strength is low. Also, it is expected that the ground water pollution caused by leaching the heavy metal into the sludge. To do recycling the sewage sludge in this site, supplementary and treatment programs should be prepared.

Interactions between Soil Moisture and Weather Prediction in Rainfall-Runoff Application : Korea Land Data Assimilation System(KLDAS) (수리 모형을 이용한 Korea Land Data Assimilation System (KLDAS) 자료의 수문자료에 대한 영향력 분석)

  • Jung, Yong;Choi, Minha
    • 한국방재학회:학술대회논문집
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    • 2011.02a
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    • pp.172-172
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    • 2011
  • The interaction between land surface and atmosphere is essentially affected by hydrometeorological variables including soil moisture. Accurate estimation of soil moisture at spatial and temporal scales is crucial to better understand its roles to the weather systems. The KLDAS(Korea Land Data Assimilation System) is a regional, specifically Korea peninsula land surface information systems. As other prior land data assimilation systems, this can provide initial soil field information which can be used in atmospheric simulations. For this study, as an enabling high-resolution tool, weather research and forecasting(WRF-ARW) model is applied to produce precipitation data using GFS(Global Forecast System) with GFS embedded and KLDAS soil moisture information as initialization data. WRF-ARW generates precipitation data for a specific region using different parameters in physics options. The produced precipitation data will be employed for simulations of Hydrological Models such as HEC(Hydrologic Engineering Center) - HMS(Hydrologic Modeling System) as predefined input data for selected regional water responses. The purpose of this study is to show the impact of a hydrometeorological variable such as soil moisture in KLDAS on hydrological consequences in Korea peninsula. The study region, Chongmi River Basin, is located in the center of Korea Peninsular. This has 60.8Km river length and 17.01% slope. This region mostly consists of farming field however the chosen study area placed in mountainous area. The length of river basin perimeter is 185Km and the average width of river is 9.53 meter with 676 meter highest elevation in this region. We have four different observation locations : Sulsung, Taepyung, Samjook, and Sangkeug observatoriesn, This watershed is selected as a tentative research location and continuously studied for getting hydrological effects from land surface information. Simulations for a real regional storm case(June 17~ June 25, 2006) are executed. WRF-ARW for this case study used WSM6 as a micro physics, Kain-Fritcsch Scheme for cumulus scheme, and YSU scheme for planetary boundary layer. The results of WRF simulations generate excellent precipitation data in terms of peak precipitation and date, and the pattern of daily precipitation for four locations. For Sankeug observatory, WRF overestimated precipitation approximately 100 mm/day on July 17, 2006. Taepyung and Samjook display that WRF produced either with KLDAS or with GFS embedded initial soil moisture data higher precipitation amounts compared to observation. Results and discussions in detail on accuracy of prediction using formerly mentioned manners are going to be presented in 2011 Annual Conference of the Korean Society of Hazard Mitigation.

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Conversion of Ginseng Saponin with the Enzyme Produced by Rhizopus sp. (Part 1) Confirmation of Conversion of Ginsenoside- Rb$_1$to Ginsenoside-Rd (Rhizopus sp.가 생산하는 효소에 의한 인삼 Saponin의 전환 (제1보) Ginsenoside-Rb$_1$에서 Ginsenoside-Rd로의 전환확인)

  • 김상달;서정훈
    • Microbiology and Biotechnology Letters
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    • v.10 no.4
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    • pp.267-273
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    • 1982
  • Among 12 kinds of ginsenosides in ginseng saponin, ginsenoside-Rb$_1$was contained the most abundantly. But ginsenoside-Rd which is similar to ginsenoside-Rb$_1$in structure, was known to be superior to ginsenoside-Rb$_1$pharmaceutically. In order to convert ginsenoside-Rb$_1$into ginsenoside-Rd by microbial enzyme treatment, a Rhizopus sp. was selected among various strais of molds found in rotten ginseng roots. Enzyme was prepared from the extract of wheat bran koji culture by ammonium sulfate precipitation (1.0 sat'd) and succeeding ammonium sulfate fractionation method (0.6-0.9 sat'd). For the purpose of use as substrate, saponins were purified by the several purification steps from alcohol extract of red ginseng roots. We obtained the total saponin which was composed of 36.5% of ginsenoside Rb$_1$, 12.2% of ginsenoside-Rd and other ginsenosides. For increase of ginsenoside-Rb$_1$ component ratio, we also obtained further purified ginsenoside-Rb group saponin containing 54.5% of ginsenoside-Rb$_1$, 1.1% of ginsenoside- Rd and other ginsenosides from purified the total saponin. In the enzymatic reaction system including the total saponin or the ginsenoside-Rb group saponin, we confirmed the specific conversion of ginsenoside-Rb$_1$to ginsenoside-Rd proportionally and no change of any other ginsenoside patterns by thin layer chromatography and high performance liquid chromatography.

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Zooplankton Community in the Front Zone of the East Sea of Korea (the Sea of Japan) : 1. Species List, Distribution of Dominant Taxa, and Species Association (동해 전선역 동물플랑크톤 군집 : 1. 종 목록, 우점종 분포, 종간 유연관계)

  • PARK Chul;CHOI Joong Ki
    • Korean Journal of Fisheries and Aquatic Sciences
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    • v.30 no.2
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    • pp.225-238
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    • 1997
  • Zooplankton distribution in the front zone was investigated in the East Sea of Korea (Sea of Japan). More than 100 taxa appeared in the study area, which was far diverse appearance being compared with those in West (Yellow Sea) and South Sea of Korea. In Nov. 1994, Paracalanus parvus, Oikopleura spp., and Noctiluca scintillans, which preferred warmer environment, predominated at the collection sites in the front zone, especially at warmer surface layer. But in Nov. 1995, when the surface water temperatures were about $2^{\circ}C$ lower than those of the previous year, cold water species of copepod Metridia lucens, immature forms of Calanus and Sagitta, and crustacean eggs dominated in the collection sites in front zone, which were geographically not Identical with those of the previous year. Vertical distributional patterns were not coincide among the taxa. This suggests that zooplankton has different specific habitat characteristics with temperatures. In general, those taxa with preference of warmer environments showed high probability of co-occurrance with low abundances while those that preferring colder environments showed low probability of co-occurrance with high abundances. It seems that warm water contributes to the high diversity of zooplankton in the front zone while cold water does to the high biomass.

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Studies on the Engineering Characteristics of Alluvial Clayey Deposits in the Bay Area of Asan (II) (아산만지역 충적점토의 토질특성에 관한 연구(II))

  • 유능환;유연택
    • Magazine of the Korean Society of Agricultural Engineers
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    • v.30 no.2
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    • pp.55-66
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    • 1988
  • This study was conducted to investigate the various engineering properties and correlationshops among the soil constants of alluvial clayey deposits distributed in the bay of Asan and their results are summarized as follows : 1. Grain size distribution of soil was consisted of 12 % of clay, 46-73 % of silt, 2-23 % of sand, and as for the consistency characteristics, 26-36 % of liquid limit, 18-21 % of plastic limit and 6-16 % of plastic index, and so the soil belonging to as a lower plastic nonorganic clay, it's specific gravity was 2,66-2.70, and the location on the plastic chart was approximately above the A-line. Z The natural moisture content and unit weight were 30-43 % and 1.76-1.87 g I cm$_3$, respectively, and according to increment of natural moisture content, the unit weight was decreased, and the initial void ratio and degree of saturation were shown of 0,87-1119 and 92- 100 %, most of saturated. 3. Cone resistance value which was shown 2.4 - 6.5 kg / $cm^2$ was a little lower and it was increased with the depth of layer and shown the formular $q_c=0.7_z+1.32$. 4. Unconfined compression strength was about 0.18-0.43kg /$cm^2$, cu, 0.1-0.22kg / $\psi$, $2-6^{\circ}$ under uu-test condition of triaxial, and CCU, 0.08-0.3 kg/cm , $\psi$, $12-18^{\circ}$ under the condition of cu-test. 5. Pre-consolidation load of characteristics of consolidation was 0.4-0.8 kg / $cm^2$, compression index, about 0.17-0.33. 6. Liquid limit and plastic index were incresased with the increment of clay content but most of alluvial clay was appeared as a normal through non-activity clay soil shown more natural moisture content than liquid limit, and their relationship as follows : LL=0.38( cy+54.8), PI=0.836(LL -17.8), PI =0.468(LL -0.48) 7. The initial void ratio presented correlationship of positive among clay content, natural moisture content and liquid limit, and that of reverse with unit weight, and their results as follws : $e_o=0.024(w_n+0.2)$, $e_o=e_o=0.0003c_y+0.0005 LL+0.0151 W_n+\frac{3.58}{r-t}-1.52$ 8. It was shown that the compression index has correlationship of postive among the clay content, liquid limit, plastic index, natural moisture content and initial void ratio, and their relationships as follows ; $c_c=0.44(e_o-0.47)$, $c_c=0.001$

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