• Asian-Australasian Journal of Animal Sciences
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• 제30권11호
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• pp.1540-1549
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• 2017

Objective: Increasing food safety demands in the animal product market have created a need for a system to trace the food distribution process, from the manufacturer to the retailer, and genetic traceability is an effective method to trace the origin of animal products. In this study, we successfully achieved the farm tracing of 6,018 multi-breed pigs, using single nucleotide polymorphism (SNP) markers strictly selected through least absolute shrinkage and selection operator (LASSO) feature selection. Methods: We performed farm tracing of domesticated pig (Sus scrofa) from SNP markers and selected the most relevant features for accurate prediction. Considering multi-breed composition of our data, we performed feature selection using LASSO penalization on 4,002 SNPs that are shared between breeds, which also includes 179 SNPs with small between-breed difference. The 100 highest-scored features were extracted from iterative simulations and then evaluated using machine-leaning based classifiers. Results: We selected 1,341 SNPs from over 45,000 SNPs through iterative LASSO feature selection, to minimize between-breed differences. We subsequently selected 100 highest-scored SNPs from iterative scoring, and observed high statistical measures in classification of breeding farms by cross-validation only using these SNPs. Conclusion: The study represents a successful application of LASSO feature selection on multi-breed pig SNP data to trace the farm information, which provides a valuable method and possibility for further researches on genetic traceability.

• International Journal of Computer Science & Network Security
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• 제23권5호
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• pp.148-162
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• 2023

Classification systems can significantly assist the medical sector by allowing for the precise and quick diagnosis of diseases. As a result, both doctors and patients will save time. A possible way for identifying risk variables is to use machine learning algorithms. Non-surgical technologies, such as machine learning, are trustworthy and effective in categorizing healthy and heart-disease patients, and they save time and effort. The goal of this study is to create a medical intelligent decision support system based on machine learning for the diagnosis of heart disease. We have used a mixed feature creation (MFC) technique to generate new features from the UCI Cleveland Cardiology dataset. We select the most suitable features by using Least Absolute Shrinkage and Selection Operator (LASSO), Recursive Feature Elimination with Random Forest feature selection (RFE-RF) and the best features of both LASSO RFE-RF (BLR) techniques. Cross-validated and grid-search methods are used to optimize the parameters of the estimator used in applying these algorithms. and classifier performance assessment metrics including classification accuracy, specificity, sensitivity, precision, and F1-Score, of each classification model, along with execution time and RMSE the results are presented independently for comparison. Our proposed work finds the best potential outcome across all available prediction models and improves the system's performance, allowing physicians to diagnose heart patients more accurately.

• 정보과학회 컴퓨팅의 실제 논문지
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• 제23권9호
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• pp.557-563
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• 2017

많은 수의 유전자 데이터를 이용해서 Lasso 회귀 분석을 할 때, 유전자 발현량 값들 사이의 높은 상관성으로 인하여 회귀 계수의 추정값이 회귀 분석의 반복 시행마다 달라질 수 있다. L1 정규화에 의해 축소되는 회귀 계수의 불안정성은 변수 선택을 어렵게 하는 요인이 된다. 본 연구에서는 이러한 문제를 해결하기 위하여 부트스트랩 단계를 반복 시행하여 높은 빈도로 선택된 유전자들을 이용한 회귀 모형들을 만들고, 각 모형들에서 안정적으로 선택되는 특징 유전자들을 찾고, 그 유전자들이 위양성 결과가 아님을 입증하였다. 또한, 회귀모형 별 예측지수의 정확도를 실제지수와의 상관관계를 이용해 측정하였는데, 선택된 특징 유전자들의 회귀계수 부호의 분포가 정확도와 관련성을 보임을 확인하였다.

• 응용통계연구
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• 제34권2호
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• pp.153-166
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• 2021

약물유전체학 연구의 주요 목표는 고차원의 유전 변수를 기반으로 개인의 약물 반응성을 예측하는 것이다. 변수의 개수가 많기 때문에 변수의 개수를 줄이기 위해서는 변수 선택이 필요하며, 선택된 변수들은 머신러닝 알고리즘을 사용하여 예측 모델을 구축하는데 사용된다. 본 연구에서는 400명의 뇌전증 환자의 차세대 염기서열 분석 데이터에 로지스틱 회귀, ReliefF, TurF, 랜덤 포레스트, LASSO의 조합과 같은 여러 가지 혼합 변수 선택 방법을 적용하였다. 선택된 변수들에 랜덤포레스트, 그래디언트 부스팅, 서포트벡터머신을 포함한 머신러닝 방법들을 적용했고 스태킹을 통해 앙상블 모형을 구축하였다. 본 연구의 결과는 랜덤포레스트와 ReliefF의 혼합 변수 선택 방법을 이용한 스태킹 모형이 다른 모형보다 더 좋은 성능을 보인다는 것을 보여주었다. 5-폴드 교차 검증을 기반으로 하여 적합한 최적 모형의 평균 검증 정확도는 0.727이고 평균 검증 AUC 값은 0.761로 나타났다. 또한, 동일한 변수를 사용할 때 스태킹 모델이 단일 머신러닝 예측 모델보다 성능이 우수한 것으로 나타났다.

• IEIE Transactions on Smart Processing and Computing
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• 제5권1호
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• pp.17-21
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• 2016

This paper investigates the importance of the computational overhead when machine learning methods, such as SVM, LASSO, AdaBoosting and AdaBagging, are used for automatic security classification.

• 대한의용생체공학회:의공학회지
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• 제44권1호
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• pp.25-32
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• 2023

Recognizing the size and location of prostate cancer is critical for prostate cancer diagnosis, treatment, and predicting prognosis. This paper proposes a model to classify the tumor region and normal tissue with cross-sectional visual images of prostatectomy tissue. We used specimen images of 44 prostate cancer patients who received prostatectomy at Gachon University Gil Hospital. A total of 289 prostate slice images consist of 200 slices including tumor region and 89 slices not including tumor region. Images were divided based on the presence or absence of tumor, and a total of 93 features from each slice image were extracted using Radiomics: 18 first order, 24 GLCM, 16 GLRLM, 16 GLSZM, 5 NGTDM, and 14 GLDM. We compared feature selection techniques such as LASSO, ANOVA, SFS, Ridge and RF, LR, SVM classifiers for the model's high performances. We evaluated the model's performance with AUC of the ROC curve. The results showed that the combination of feature selection techniques LASSO, Ridge, and classifier RF could be best with an AUC of 0.99±0.005.

• 한국멀티미디어학회논문지
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• 제24권12호
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• pp.1614-1623
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• 2021

In this paper, the purpose is evaluation of the effect of using fractal feature in machine learning based pancreatic tumor classification. We used the data that Pancreas CT series 469 case including 1995 slice of benign and 1772 slice of malignant. Feature selection is implemented from 109 feature to 7 feature by Lasso regularization. In Fractal feature, fractal dimension is obtained by box-counting method, and hurst coefficient is calculated range data of pixel value in ROI. As a result, there were significant differences in both benign and malignancies tumor. Additionally, we compared the classification performance between model without fractal feature and model with fractal feature by using support vector machine. The train model with fractal feature showed statistically significant performance in comparison with train model without fractal feature.

• 대한의용생체공학회:의공학회지
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• 제42권6호
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• pp.268-276
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• 2021

Functional near-infrared spectroscopy-based brain-computer interface (fNIRS-based BCI) has been receiving much attention. However, we are practically constrained to obtain a lot of fNIRS data by inherent hemodynamic delay. For this reason, when employing machine learning techniques, a problem due to the high-dimensional feature vector may be encountered, such as deteriorated classification accuracy. In this study, we employ an elastic net-based feature selection which is one of the embedded methods and demonstrate the utility of which by analyzing the results. Using the fNIRS dataset obtained from 18 participants for classifying brain activation induced by mental arithmetic and idle state, we calculated classification accuracies after performing feature selection while changing the parameter α (weight of lasso vs. ridge regularization). Grand averages of classification accuracy are 80.0 ± 9.4%, 79.3 ± 9.6%, 79.0 ± 9.2%, 79.7 ± 10.1%, 77.6 ± 10.3%, 79.2 ± 8.9%, and 80.0 ± 7.8% for the various values of α = 0.001, 0.005, 0.01, 0.05, 0.1, 0.2, and 0.5, respectively, and are not statistically different from the grand average of classification accuracy estimated with all features (80.1 ± 9.5%). As a result, no difference in classification accuracy is revealed for all considered parameter α values. Especially for α = 0.5, we are able to achieve the statistically same level of classification accuracy with even 16.4% features of the total features. Since elastic net-based feature selection can be easily applied to other cases without complicated initialization and parameter fine-tuning, we can be looking forward to seeing that the elastic-based feature selection can be actively applied to fNIRS data.

• 산업경영시스템학회지
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• 제43권2호
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• pp.33-38
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• 2020

Anomaly detection of Machine Learning such as PCA anomaly detection and CNN image classification has been focused on cross-sectional data. In this paper, two approaches has been suggested to apply ML techniques for identifying the failure time of big time series data. PCA anomaly detection to identify time rows as normal or abnormal was suggested by converting subjects identification problem to time domain. CNN image classification was suggested to identify the failure time by re-structuring of time series data, which computed the correlation matrix of one minute data and converted to tiff image format. Also, LASSO, one of feature selection methods, was applied to select the most affecting variables which could identify the failure status. For the empirical study, time series data was collected in seconds from a power generator of 214 components for 25 minutes including 20 minutes before the failure time. The failure time was predicted and detected 9 minutes 17 seconds before the failure time by PCA anomaly detection, but was not detected by the combination of LASSO and PCA because the target variable was binary variable which was assigned on the base of the failure time. CNN image classification with the train data of 10 normal status image and 5 failure status images detected just one minute before.

• International Journal of Computer Science & Network Security
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• 제23권12호
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• pp.101-106
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• 2023

Chronic illnesses are among the most common serious problems affecting human health. Early diagnosis of chronic diseases can assist to avoid or mitigate their consequences, potentially decreasing mortality rates. Using machine learning algorithms to identify risk factors is an exciting strategy. The issue with existing feature selection approaches is that each method provides a distinct set of properties that affect model correctness, and present methods cannot perform well on huge multidimensional datasets. We would like to introduce a novel model that contains a feature selection approach that selects optimal characteristics from big multidimensional data sets to provide reliable predictions of chronic illnesses without sacrificing data uniqueness.[1] To ensure the success of our proposed model, we employed balanced classes by employing hybrid balanced class sampling methods on the original dataset, as well as methods for data pre-processing and data transformation, to provide credible data for the training model. We ran and assessed our model on datasets with binary and multivalued classifications. We have used multiple datasets (Parkinson, arrythmia, breast cancer, kidney, diabetes). Suitable features are selected by using the Hybrid feature model consists of Lassocv, decision tree, random forest, gradient boosting,Adaboost, stochastic gradient descent and done voting of attributes which are common output from these methods.Accuracy of original dataset before applying framework is recorded and evaluated against reduced data set of attributes accuracy. The results are shown separately to provide comparisons. Based on the result analysis, we can conclude that our proposed model produced the highest accuracy on multi valued class datasets than on binary class attributes.[1]