• Asian Pacific Journal of Cancer Prevention
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• v.14 no.8
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• pp.4621-4625
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• 2013

The purpose of this study was to construct a protein-protein interaction (PPI) network related to oral squamous cell carcinoma (OSCC). Each protein was ranked and those most associated with OSCC were mined within the network. First, OSCC-related genes were retrieved from the Online Mendelian Inheritance in Man (OMIM) database. Then they were mapped to their protein identifiers and a seed set of proteins was built. The seed proteins were expanded using the nearest neighbor expansion method to construct a PPI network through the Online Predicated Human Interaction Database (OPHID). The network was verified to be statistically significant, the score of each protein was evaluated by algorithm, then the OSCC-related proteins were ranked. 38 OSCC related seed proteins were expanded to 750 protein pairs. A protein-protein interaction nerwork was then constructed and the 30 top-ranked proteins listed. The four highest-scoring seed proteins were SMAD4, CTNNB1, HRAS, NOTCH1, and four non-seed proteins P53, EP300, SMAD3, SRC were mined using the nearest neighbor expansion method. The methods shown here may facilitate the discovery of important OSCC proteins and guide medical researchers in further pertinent studies.

• Journal of Korean Society of Transportation
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• v.34 no.2
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• pp.158-167
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• 2016

This study evaluates potential sources of errors in k-NN(k-nearest neighbor) algorithm such as procedures, variables, and input data. Previous research has been thoroughly reviewed for understanding fundamentals of k-NN algorithm that has been widely used for short-term traffic states prediction. The framework of this algorithm commonly includes historical data smoothing, pattern database, similarity measure, k-value, and prediction horizon. The outcomes of this study suggests that: i) historical data smoothing is recommended to reduce random noise of measured traffic data; ii) the historical database should contain traffic state information on both normal and event conditions; and iii) trial and error method can improve the prediction accuracy by better searching for the optimum input time series and k-value. The study results also demonstrates that predicted error increases with the duration of prediction horizon and rapidly changing traffic states.

• Journal of the Korea Institute of Information and Communication Engineering
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• v.22 no.4
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• pp.595-601
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• 2018

Recently, as the fine dust level has risen rapidly, there is a great interest. Exposure to fine dust is associated with the development of respiratory and cardiovascular diseases and has been reported to increase death rate. In addition, there exist damage to fine dusts continues at industrial sites. However, exposure to fine dust is inevitable in modern life. Therefore, predicting and minimizing exposure to fine dust is the most efficient way to reduce health and industrial damages. Existing fine dust prediction model is estimated as good, normal, poor, and very bad, depending on the concentration range of the fine dust rather than the concentration value. In this paper, we study and implement to predict the PM10 level by applying the Artificial neural network algorithm and the K-Nearest Neighbor algorithm, which are machine learning algorithms, using the actual weather and air quality data.

• Spatial Information Research
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• v.20 no.4
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• pp.83-92
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• 2012

Location-based services (LBS) are increasingly popular due to the improvement of geo-positioning capabilities and wireless communication technology. However, in order to enjoy LBS services, a user requesting a query must send his/her exact location to the LBS provider. Therefore, it is a key challenge to preserve user's privacy while providing LBS. To solve this problem, the existing method employs a 2PASS cloaking framework that not only hides the actual user location but also reduces bandwidth consumption. However, 2PASS does not fully guarantee the actual user privacy because it does not take the real user distribution into account. Hence, in this paper, we propose a nearest neighbor query processing algorithm that supports K-anonymity property based on the weighted adjacency graph(WAG). Our algorithm not only preserves the location of a user by guaranteeing k-anonymity in a query region, but also improves a bandwidth usage by reducing unnecessary search for a query result. We demonstrate from experimental results that our algorithm outperforms the existing one in terms of query processing time and bandwidth usage.

• KIISE Transactions on Computing Practices
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• v.23 no.2
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• pp.110-115
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• 2017

We propose a new indoor positioning algorithm named Cut-off algorithm. This algorithm cuts off candidates of beacons and reference points in advance, before looking for K neighbor reference points which are guessed to be closest to the user's actual location. The algorithm consists of two phases: off-line phase, and on-line phase. In the off-line phase, RSSI and UUID data from beacons are gathered at reference points placed in the indoor environment, and construct a fingerprint map of the data. In the on-line phase, the map is reduced to a smaller one according to the RSSI data of beacons received from the user's device. The nearest K reference points are selected using the reduced map, which are used for estimating user's location. In both phases, relative ranks of the peak signals received from each beacon are used, which smoothen the fluctuations of the signals. The algorithm is shown to be more efficient in terms of accuracy and estimating time.

• Journal of the Korea Society for Simulation
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• v.20 no.2
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• pp.77-85
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• 2011

It is believed that the anomalies or diseases of human organs are identified by the analysis of the patterns. This paper proposes a new classification technique for the identification of cancer disease using the proteome patterns obtained from two-dimensional polyacrylamide gel electrophoresis(2-D PAGE). In the new classification method, three different classification methods such as support vector machine(SVM), multi-layer perceptron(MLP) and k-nearest neighbor(k-NN) are extended by multi-boosting method in an array of subclassifiers and the results of each subclassifier are merged by ensemble method. Genetic algorithm was applied to obtain optimal feature set in each subclassifier. We applied our method to empirical data set from cancer research and the method showed the better accuracy and more stable performance than single classifier.

• Journal of the Korea Institute of Information and Communication Engineering
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• v.18 no.12
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• pp.2919-2925
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• 2014

Because of the rapid growth of mobile communication and wireless communication, Location-based services are handled in many applications. So, the management and analysis of spatio-temporal data are a hot issue in database research. Index structure and query processing of such contents are very important for these applications. This paper addressees algorithms that make index structure by using Douglas-Peucker Algorithm and process nearest neighbor search query efficiently on moving objects trajectories. We compare and analyze our algorithms by experiments. Our algorithms make small size of index structure and process the query more efficiently.

• ETRI Journal
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• v.44 no.5
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• pp.769-779
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• 2022

Spectral clustering has become a typical and efficient clustering method used in a variety of applications. The critical step of spectral clustering is the similarity measurement, which largely determines the performance of the spectral clustering method. In this paper, we propose a novel spectral clustering algorithm based on the local similarity measure of shared neighbors. This similarity measurement exploits the local density information between data points based on the weight of the shared neighbors in a directed k-nearest neighbor graph with only one parameter k, that is, the number of nearest neighbors. Numerical experiments on synthetic and real-world datasets demonstrate that our proposed algorithm outperforms other existing spectral clustering algorithms in terms of the clustering performance measured via the normalized mutual information, clustering accuracy, and F-measure. As an example, the proposed method can provide an improvement of 15.82% in the clustering performance for the Soybean dataset.

• IEIE Transactions on Smart Processing and Computing
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• v.6 no.3
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• pp.183-192
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• 2017

k-nearest neighbor (K-NN) is a well-known classification algorithm, being feature space-based on nearest-neighbor training examples in machine learning. However, K-NN, as we know, is a lazy learning method. Therefore, if a K-NN-based system very much depends on a huge amount of history data to achieve an accurate prediction result for a particular task, it gradually faces a processing-time performance-degradation problem. We have noticed that many researchers usually contemplate only classification accuracy. But estimation speed also plays an essential role in real-time prediction systems. To compensate for this weakness, this paper proposes correlation coefficient-based clustering (CCC) aimed at upgrading the performance of K-NN by leveraging processing-time speed and plurality rule-based density (PRD) to improve estimation accuracy. For experiments, we used real datasets (on breast cancer, breast tissue, heart, and the iris) from the University of California, Irvine (UCI) machine learning repository. Moreover, real traffic data collected from Ojana Junction, Route 58, Okinawa, Japan, was also utilized to lay bare the efficiency of this method. By using these datasets, we proved better processing-time performance with the new approach by comparing it with classical K-NN. Besides, via experiments on real-world datasets, we compared the prediction accuracy of our approach with density peaks clustering based on K-NN and principal component analysis (DPC-KNN-PCA).

• Journal of Korea Spatial Information System Society
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• v.11 no.1
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• pp.105-114
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• 2009

Recently, location-based services which provides k nearest POIs, e.g., gas stations, restaurants and banks, are essential such applications as telematics, ITS(Intelligent Transport Systems) and kiosk. For this, the Voronoi Diagram k-NN(Nearest Neighbor) search algorithm has been proposed. It retrieves k-NNs by using a file storing pre-computed network distances of POIs in Voronoi diagram. However, this algorithm causes the cost problem when expanding a Voronoi diagram. Therefore, in this paper, we propose an algorithm which generates a matrix of the shortest distance between border points of a Voronoi diagram. The shortest distance is measured each border point to all of the rest border points of a Voronoi Diagram. To retrieve desired k nearest POIs, we also propose a k-NN search algorithm using the matrix of the shortest distance. The proposed algorithms can m inim ize the cost of expanding the Voronoi diagram by accessing the pre-computed matrix of the shortest distances between border points. In addition, we show that the proposed algorithm has better performance in terms of retrieval time, compared with existing works.