Mining Proteins Associated with Oral Squamous Cell Carcinoma in Complex Networks |
Liu, Ying
(State Key Laboratory of Oral Diseases, West China Hospital of Stomatology, Sichuan University)
Liu, Chuan-Xia (State Key Laboratory of Oral Diseases, West China Hospital of Stomatology, Sichuan University) Wu, Zhong-Ting (State Key Laboratory of Oral Diseases, West China Hospital of Stomatology, Sichuan University) Ge, Lin (State Key Laboratory of Oral Diseases, West China Hospital of Stomatology, Sichuan University) Zhou, Hong-Mei (Department of Oral Medicine, West China School of Stomatology, Sichuan University) |
1 | Chen JY, Shen C, Sivachenko AY (2006). Mining alzheimer disease relevant proteins from integrated protein interactome data. Pac Symp Biocomput, 11, 367-78. |
2 | Cheng SJ, Kok SH, Lee JJ (2011). Significant association of SRC protein expression with the progression, recurrence, and prognosis of oral squamous cell carcinoma in taiwan. Head Neck, 34, 1340-5. |
3 | Choi S, Myers JN (2008). Molecular pathogenesis of oral squamous cell carcinoma: implications for therapy. J Dent Res, 87, 14-32. DOI ScienceOn |
4 | Duan L, Yao J, Wu XX, Fan MW (2006). Growth suppression induced by Notch1 activation involves Wnt--catenin down-regulation in human tongue carcinoma cells. Biol Cell, 98, 479-90. DOI |
5 | Gayther SA, Batley SJ, Linger L, et al (2000). Mutations truncating the EP300 acetylase in human cancers. Nat Genet, 24, 300-3. DOI ScienceOn |
6 | Han GW, Wan XJ (2011). Roles of TGFb signaling smads in squamous cell carcinoma. Cell Biosci, 2011, 41, 1-8. |
7 | Jayaraman B, Valiathan GM, Jayakumar K, et al (2012). Lack of mutation in p53 and H-ras genes in phenytoin induced gingival overgrowth suggests its non cancerous nature. Asian Pac J Cancer Prev, 13, 5535-8. DOI ScienceOn |
8 | Lee1 CH, Hung HW, Hung PH, Shieh YS (2010). Epidermal growth factor receptor regulates b-catenin location, stability, and transcriptional activity in oral cancer. Mol Cancer, 9, 1-12. DOI ScienceOn |
9 | Maslov S, Sneppen K (2002). Specificity and stability in topology of protein networks. Science, 296, 910-3. DOI ScienceOn |
10 | Mroz EA, Rocco JW (2010). Functional P53 status as a biomarker for chemotherapy response in oral-cavity cancer. J Clin Oncol, 28, 715-7. DOI ScienceOn |
11 | Murugan AK, Hong NT, Cuc TT, et al (2009). Detection of two novel mutations and relatively high incidence of H-RAS mutations in vietnamese oral cancer. Oral Oncol, 45, 161-6. DOI ScienceOn |
12 | Batagelj V, Mrvar A (2011). Pajek program for analysis and visualization of large networks. Reference Manual, University of Ljubljana, Slovenia. |
13 | Bonetta L (2010). Protein-protein interactions: interactome under construction. Nature, 468, 851-4. DOI ScienceOn |
14 | Ning K, Ng HK, Srihari S, et al (2010). Examination of the relationship between essential genes in PPI network and hub proteins in reverse nearest neighbor topology. BMC Bioinformatics, 11, 1-14. DOI ScienceOn |
15 | Oti M, Ballouz S, Wouters MA (2011). Web tools for the prioritization of candidate disease genes. Methods Mol Biol, 760, 189-206. DOI ScienceOn |
16 | Pasini FS, Maistro S, Snitcovsky I (2012). Four-gene expression model predictive of lymph node metastases in oral squamous cell carcinoma. Acta Oncol, 51, 77-85. DOI ScienceOn |
17 | Ravindran G, Devaraj H (2012). Aberrant expression of -catenin and its association with Np63, Notch-1, and clinicopathological factors in oral squamous cell carcinoma. Clin Oral Investig, 16, 1275-88. DOI ScienceOn |
18 | Seal RL, Gordon SM, Lush MJ, et al (2011). Genenames Org: The HGNC resources in 2011. Nucleic Acids Res, 39, 514-9. DOI |
19 | Wagner A, Fell DA (2001). The small world inside large metabolic networks. Proceedings of the royal society of London. Int J Biol Sci, 268, 1803-10. |
20 | Xia RH, Song XM, Wang XJ, et al (2013). The combination of SMAD4 expression and histological grade of dysplasia is a better predictor for the malignant transformation of oral leukoplakia. PLoS One, 8, 1-6. |
21 | Yang G, Yang X (2010). Smad4-mediated TGF- signaling in tumorigenesis. Int J Biol Sci, 6, 1-8. |
22 | Zhang L, Hu K, Tang Y (2010). Predicting disease-related genes by topological similarity in human protein-protein interaction network. Cent Eur J Phys, 8 , 672-82. DOI ScienceOn |