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Phylogenetic Relationship in Different Commercial Strains of Pleurotus nebrodensis Based on ITS Sequence and RAPD

  • Alam, Nuhu;Shim, Mi-Ja;Lee, Min-Woong;Shin, Pyeong-Gyun;Yoo, Young-Bok;Lee, Tae-Soo
    • Mycobiology
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    • v.37 no.3
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    • pp.183-188
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    • 2009
  • The molecular phylogeny in nine different commercial cultivated strains of Pleurotus nebrodensis was studied based on their internal transcribed spacer (ITS) region and RAPD. In the sequence of ITS region of selected strains, it was revealed that the total length ranged from 592 to 614 bp. The size of ITS1 and ITS2 regions varied among the strains from 219 to 228 bp and 211 to 229 bp, respectively. The sequence of ITS2 was more variable than ITS1 and the region of 5.8S sequences were identical. Phylogenetic tree of the ITS region sequences indicated that selected strains were classified into five clusters. The reciprocal homologies of the ITS region sequences ranged from 99 to 100%. The strains were also analyzed by RAPD with 20 arbitrary primers. Twelve primers were efficient to applying amplification of the genomic DNA. The sizes of the polymorphic fragments obtained were in the range of 200 to 2000 bp. RAPD and ITS analysis techniques were able to detect genetic variation among the tested strains. Experimental results suggested that IUM-1381, IUM-3914, IUM-1495 and AY-581431 strains were genetically very similar. Therefore, all IUM and NCBI gene bank strains of P. nebrodensis were genetically same with some variations.

PCR-RFLP and Sequence Analysis of the rDNA ITS Region in the Fusarium spp.

  • Min, Byung-Re;Lee, Young-Mi;Choi, Yong-Keel
    • Journal of Microbiology
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    • v.38 no.2
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    • pp.66-73
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    • 2000
  • To investigate the genetic relationship among 12 species belonging to the Fusarium section Martiella, Dlaminia, Gibbosum, Arthrosporiella, Liseola and Elegans, the internal transcribed spacer(ITS) regions of ribosomal DNA (rDNA) were amplified with primer pITS1 and pITS4 using the polymerase chain reaction(PCR). After the amplified products were digested with 7 restriction enzymes, restriction fragment length polymorphism (RFLP) patterns were analyzed. The partial nucleotide sequences of the ITS region were determined and compared. Little variation was observed in the size of the amplified product having sizes of 550bp or 570bp. Based on the RFLP analysis, the 12 species studied were divided into 5 RFLP types. In particular, strains belonging to the section Martiella were separated into three RFLP types. Interestingly, the RFLP type of F. solani f. sp. piperis was identical with that of isolates belonging to the section Elegans. In the dendrogram derived from RFLP analysis of the ITS region, the Fusarium spp. examined were divided into two major groups. In general, section Martiella excluding F. solani f. sp. piperis showed relatively low similarity with the other section. The dendrogram based on the sequencing analysis of the ITS2 region also gave the same results as that of the RFLP analysis. As expected, 5.8S, a coding region, was highly conserved, whereas the ITS2 region was more variable and informative. The difference in the ITS2 region between the length of F. solani and its formae speciales excluding F. solani f. sp. piperis and that of other species was caused by the insertion/deletion of nucleotides in positions 143-148 and 179-192.

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Phylogenetic Analysis of the Entomopathogenic Fungal Species and Taxonomical Positions of Their Commercial Products (동충하초의 계통분류 및 시판동충하초의 분류학적 위치)

  • 김순한;이영자;김인복;김미경;한정아;홍무기;이순호;이재동
    • Journal of Life Science
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    • v.13 no.4
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    • pp.400-411
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    • 2003
  • This study was carried out to identify the phylogenetic relationship and to know the distribution of the entomopathogenic fungi by comparing the DNA sequences of internal transcribed spacer regions (ITS1 and ITS2) and 5.8S ribosomal DNA (rDNA) repeat unit. The entomopathogenic fungi had their specific sequences in ITS1 and 2 regions depending on species. The comparison of the ITS sequences of standard strains indicated that the sequences ITS1 were more variable than those of ITS2. It seems that Paecilomyces tenuipes, Isaria japonicus and P. japonicus are the same species but called as different names because of very similar sequences, and unidentified Paecilomyces sp. KACC 40220 and KACC 40656 showed identical sequences to P. tenuipes. Thirty six strains of the commercial products of entomopathogenic fungi used in this study were divided into four groups by the phylogenetic analysis based on 5.85 rDNA and ITS regions. We found twenty-three strains were P. tenuipes / japonica, eleven strains were C. militaris, and other two strains were Beauveria bassiana and C. multiaxialis, respectively.

Variation of nuclear ribosomal ITS sequences of Polygonum section Persicaria (Polygonaceae) in Korea (한국산 여뀌속 Persicaria절(마디풀과)의 핵 리보오솜 ITS 염기서열 변이)

  • Kwak, Myounghai;Kim, Min-Ha;Won, Hyosig;Park, Chong-Wook
    • Korean Journal of Plant Taxonomy
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    • v.36 no.1
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    • pp.21-40
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    • 2006
  • We examined nrDNA ITS sequences from 16 taxa of Polygonum sect. Persicaria(Polygonaceae) in Korea to infer relationships among the taxa within the section. A neighbor-joining tree obtained from the analysis of the ITS sequences suggest that the ITS region was useful inferring the phylogenetic relationships among the taxa. The neighbor-joining tree indicates that P.amphibium is clearly separated from the other Korean taxa. The tree also reveals the presence of five major groups in the Korean taxa of the section; 1) P. lapathifolium var. lapathifolium, 2) P. persicaria and P. viscoferum, 3) P. orientale and P. viscosum, 4) P. japonicum and 5) a group including the remaining taxa. these relationships depicted on the ITS tree are largely congruent with those inferred from morphological and anatomical characters.

Phylogenetic Analyses of Nuclear rDNA ITS Sequences of Korean Allium L. Subgenus Rhizirideum(Alliaceae)

  • Lee, Nam-Sook
    • Animal cells and systems
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    • v.5 no.4
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    • pp.283-290
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    • 2001
  • Phylogenetic relationships among the Korean taxa of the genus Allium subgenus Rhizirideum and some related taxa were assessed on the basis of in sequences of nuclear ribosomal DNA. Twenty-eight accessions of the genus Allium L. consisting of subgenera Rhizirideum (19 taxa), Allium (5 taxa) and Amerallium (one taxon) were analyzed. The variation in the ITS region was informative at the levels of section except for sect. Reticulato- bulbosa which is known to be of multiple origin. The ITS 2 region was longer than the ITS 1 region, and all of the investigated Allium taxa were the same in length in the 5.8S region except for A. monanthum. Allium cyaneum var. cyaneum was the shortest (635 bp) and A. victorialis the longest (646 bp) among the investigated Korean taxa. The three morphologically similar taxa, A. thunbergii, A. sacculiferum that has been included in A. thunbergii, and A. deltoid- fistulosum, had the same ITS lengths of 641 bp, but were clearly distinguished in the phylogenetic analysis of their ITS sequences.

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ITS System Architecture based upon Object-oriented Methodology (객체지향 기반의 ITS 시스템 아키텍쳐 구축방안)

  • Yoon, Byoungjo
    • Journal of the Society of Disaster Information
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    • v.12 no.1
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    • pp.105-115
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    • 2016
  • The purpose of this study is to present in-vehicle dynamic route guidance systems based upon object-oriented ITS LSA. We expect to apply efficiently for connection and expansion of systems what is more to present systems based upon object-oriented of the other ITS LSA.

Development of Live-line Insulator Tester and Its Application to 154kV Power Lines - Part 1 : Tester Development (활선애자점검기의 개발 및 154kV 선로에의 적용 - 제1부 : 점검기 개발)

  • Lee, Jae-Kyung;Park, Joon-Young;Cho, Byung-Hak;Oh, Ki-Yong
    • The Transactions of the Korean Institute of Electrical Engineers P
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    • v.59 no.1
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    • pp.83-88
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    • 2010
  • A new live-line insulator tester was developed to detect faulty insulators in 154kV power transmission lines. This paper is the first part of the two-part paper and deals with its tester development. The developed tester has the following characteristics. First, it automates parts of the insulator inspection process by using a sensor and an actuator, and secondly, it sustains its weight by itself, not by a lineman. Finally, it measures the insulation resistance of an insulator together with its distribution voltage to provide more information for its analysis and diagnosis. These leads to the improvement of its operation efficiency, measurement reliability and usability. Its effectiveness was validated by live-line field tests in actual power lines.

The taxonomic status of Angelica purpuraefolia and its allies in Korea : Inferences based on ITS molecular phylogenetic analyses

  • Lee, Byoung Yoon;Kwak, Myounghai;Han, Jeong Eun;Kim, Se-Jung
    • Korean Journal of Plant Taxonomy
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    • v.41 no.3
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    • pp.209-214
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    • 2011
  • The taxonomy of the umbelliferous species Angelica amurensis and its allies was reviewed on the basis of molecular phylogenies derived from sequences of nuclear ribosomal DNA internal transcribed spacer (ITS) regions. Strict consensus of six minimal length 119-step trees derived from equally weighted maximum parsimony analysis of combined nuclear rDNA ITS1 and ITS2 sequences from 29 accessions of Angelica and outgroups indicated that Angelica purpuraefolia, known to be endemic to Korea, is the same species as A. amurensis. Comparisons of sequence pairs across both spacer regions revealed identity or 1-2 bp differences between A. purpuraefolia and A. amurensis. These results indicated that the two taxa are not distinguished taxonomically. Also, nuclear rDNA ITS regions are discussed as potential barcoding loci for identifying Korean Angelica.

On the Development of Alibaba.com

  • Wang, Guo-an
    • International Commerce and Information Review
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    • v.4 no.2
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    • pp.223-231
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    • 2002
  • Alibaba.com has developed very fast and created a miracle in the international e-business community since it was established just three years ago. The paper at first introduces its rapid development from its establishment, the construction of its websites and its e-products and e-services, its mode of operation and corporate culture. Secondly it analyses the reasons why it has not only survived, but also developed very fast and begun to make profits despite the cut-throat competition in the e-business community in the tough e-environment in China. Then it displays and analyzes its competitive edges and the challenges it is confronted with. Finally it predicts its promising future.

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Does the SED of a galaxy constrain its merger history?

  • Lee, Jae-Hyun;Yi, Suk-Young
    • The Bulletin of The Korean Astronomical Society
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    • v.36 no.2
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    • pp.76.2-76.2
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    • 2011
  • It is widely accepted that the SED of a galaxy relates to its morphology. In addition, the SED of the galaxy is closely connected to its star formation history, and its morphological properties are affected by the merger history, interactions with its environment, and the gravitational instability of its dynamical system. Thus, it is likely that star formation history correlates to the elements that determine morphological properties. Among the elements, this study investigates how much the merger histories of galaxies influence their star formation histories. By using simple merger trees and semi-analytic models, which disregard feedback processes to exclusively identify merger effects on star formation histories, we examine the relation between various merger histories and SEDs of galaxies. From the results, we discuss whether the SED of a galaxy can represent and constrain its merger history.

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