• Title/Summary/Keyword: Intregration of Biological Information Sources

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An XML Query System in a Wrapper System for Integrating Heterogeneous Biological Databases (이질의 생물 정보원 통합을 위한 랩퍼 시스템에서의 XML 질의 처리 시스템)

  • Park Eun-Koung;Kang Dong-Wan;Jung Chai-Young;Kim Hyun-Ju;Bae Jong-Min
    • The KIPS Transactions:PartD
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    • v.12D no.4 s.100
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    • pp.553-568
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    • 2005
  • In order to integrate distributed biological information sources physically or virtually, it is necessary to overcome the heterogeneity of information sources and support a superior generality and adaptation in order to satisfy user's various demands. In this paper, we present a flexible and general XML query engine of a wrapper system in designing the middleware system to integrate data as well as application programs. Since this query engine applies user-defined XML view, it is possible to composite flexible integrated query. The query processing in a wrapper requires view composition, query translation into local sources, and generation of XML documents from local query results. We present a query processing model based on the view tree, where the n views and the XML queries are represented by the view tree. Moreover, to confirm the generality of our query processing model, we present a methodology of query processing for relational databases, web sources, and application programs whose return types of query results are relational tuples or XML documents.