• Journal of Microbiology and Biotechnology
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• v.26 no.1
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• pp.66-71
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• 2016

PikD is a widely known pathway-specific regulator for controlling pikromycin production in Streptomyces venezuelae ATCC 15439, which is a representative of the large ATP-binding regulator of the LuxR family (LAL) in Streptomyces sp. RapH and FkbN also belong to the LAL family of transcriptional regulators, which show greatest homology with the ATP-binding motif and helix-turn-helix DNA-binding motif of PikD. Overexpression of pikD and heterologous expression of rapH and fkbN led to enhanced production of pikromycin by approximately 1.8-, 1.6-, and 1.6-fold in S. venezuelae, respectively. Cross-complementation of rapH and fkbN in the pikD deletion mutant (ΔpikD) restored pikromycin and derived macrolactone production. Overall, these results show that heterologous expression of rapH and fkbN leads to the overproduction of pikromycin and its congeners from the pikromycin biosynthetic pathway in S. venezuelae, and they have the same functionality as the pathwayspecific transcriptional activator for the pikromycin biosynthetic pathway in the ΔpikD strain. These results also show extensive "cross-communication" between pathway-specific regulators of streptomycetes and suggest revision of the current paradigm for pathwayspecific versus global regulation of secondary metabolism in Streptomyces species.

• Parasites, Hosts and Diseases
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• v.56 no.6
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• pp.583-588
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• 2018

Although widely studied, the natural diversity of the hard tick is not well known. In this study, we collected 194 sequences from 67 species, covering 7 genera of hard tick. The 5' region of the mitochondrial cytochrome c oxidase subunit 1 region (586 bp) has been used to investigate intra- and inter-species variation and the phylogenetic tree of neighbor joining method has been used for assessment. As a result, by comparing the K2P-distance of intra- and interspecies, 30 samples (15.2%) shown that interspecies distance was larger than the minimum interspecfic distance. From the phylogenetic analysis, 86.8% (49) of the species were identified correctly at the genus level. On deeper analysis on these species suggested the possibility of presence cryptic species. Therefore, further work is required to delineate species boundaries and to develop a more complete understanding of hard tick diversity over larger scale.

• Animal Bioscience
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• v.37 no.2_spc
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• pp.323-336
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• 2024

Molecular hydrogen (H₂) and formate (HCOO^-) are metabolic end products of many primary fermenters in the rumen ecosystem. Both play a vital role in fermentation where they are electron sinks for individual microbes in an anaerobic environment that lacks external electron acceptors. If H₂ and/or formate accumulate within the rumen, the ability of primary fermenters to regenerate electron carriers may be inhibited and microbial metabolism and growth disrupted. Consequently, H₂- and/or formate-consuming microbes such as methanogens and possibly homoacetogens play a key role in maintaining the metabolic efficiency of primary fermenters. There is increasing interest in identifying approaches to manipulate the rumen ecosystem for the benefit of the host and the environment. As H₂ and formate are important mediators of interspecies interactions, an understanding of their production and utilization could be a significant starting point for the development of successful interventions aimed at redirecting electron flow and reducing methane emissions. We conclude by discussing in brief ruminant methane mitigation approaches as a model to help understand the fate of H₂ and formate in the rumen ecosystem.

• Korean Journal of Environment and Ecology
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• v.35 no.2
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• pp.164-180
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• 2021

Plants Social Network(PSN) analysis combines the plant sociological method and the social network analysis to understand plant society focusing on environmental-to-plant and plant-to-plant relationships. PSN is at an early stage of research and require comparing plant society analyses in various environments and existing interspecies binding analysis. This study conducted a vegetation structural analysis of Mudeungsan National Park and compared the existing interspecies connection analysis with the PSN. A total of 60 plots were established for a survey on the Old Trail. The TWINSPAN and DCA analysis showed that the 60 survey plots were divided into the Quercus serrata-Pinus densiflora community (Community I) and the Quercus mongolica community (Community II) based on an altitude of 800 meters. We performed the interspecies correlation with more than 30% emergence frequency and the DCA analysis and compared the results with a focus on the major species in each colony. The results showed that Quercus serrata had a correlation of -0.450^** and -0.375^** with Pinus densiflora and Quercus mongolica, respectively. The DCA analysis also confirmed that Quercus serrata was located close to Pinus densiflora and far from Quercus mongolica along one axis. For the PSN analysis of PSN, 40 survey plots were added to investigate the species appearing in a total of 100 survey plots. The network structural analysis showed 378 links and a species having an average of 6 interspecies bindings. The density was 0.097, the diameter was 7, and the average path distance was 2.788, similar to the PSN analysis results of the Busan Metropolitan City. The plant social network analysis showed similar results to the existing interspecies combination analysis, enabling analyzing more data than the existing methods and observing the structure of plant society.

• Reproductive and Developmental Biology
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• v.28 no.1
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• pp.21-27
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• 2004

This study was conducted to investigate the developmental ability of caprine embryos after somatic cell interspecies nuclear transfer. Recipient bovine and porcine oocytes were obtained from slaughterhouse and were matured in vitro according to established protocols. Donor cells were obtained from an ear-skin biopsy of a caprine, digested with 0.25% trypsin-EDTA in PBS and primary fibroblast cultures were established in TCM-199 with 10% FBS. The matured oocytes were dipped in D-PBS plus 10% FBS ＋ 7.5 $\mu$ g/ml cytochalasin B and 0.05M sucrose. Enucleation were accomplished by aspirating the first polar body and partial cytoplasm which containing metaphase II chromosomes using a micropipette with an out diameter of 20∼30 $\mu$m. A Single donor cell was individually transferred into the perivitelline space of each enucleated oocyte. The reconstructed oocytes were electric fusion with 0.3M mannitol fusion medium. After the electrofusion, embryos were activated by electric stimulation. Interspecies nuclear transfer embryos with bovine cytoplasts were cultured in TCM-199 medium supplemented with 10% FBS including bovine oviduct epithelial cells for 7∼9 day. And porcine cytoplasts were cultured in NCSU-23 medium supplemented with 10% FBS for 6 ∼8 day at $39^{\circ}C, 5% CO_2 $in air. Interspecies nuclear transfer by recipient bovine oocytes were fused with electric length 1.95 kv/cm and 2.10 kv/cm. There was no significant difference between two electric length in fusion rate(47.7 and 44.6%) and in cleavage rate(41.9 and 54.5%). Using electric length 1.95 kv/cm and 2.10 kv/cm in caprine-porcine NT oocytes, there was also no significant difference between two treatments in fusion rate(51.3 and 46.1%) and in cleavage rate(75.0 and 84.9%). The caprine-bovine NT oocytes fusion rate was lower(P＜0.05) in 1 pulse for 60 $\mu$sec(19.3%), than those from 1 pulse for 30 $\mu$sec(50.8%) and 2 pulse for 30 $\mu$sec(31.0%). The cleavage rate was higher(P＜0.05) in 1 pulse for 30 $\mu$sec(53.3%) and 2 pulse for 30 $\mu$sec(50.0%), than in 1 pulse for 60 $\mu$sec(18.2%). The caprine-porcine NT oocytes fusion rate was 48.1% in 1 pulse for 30 $\mu$sec, 45.2% in 2 pulse for 30 $\mu$sec and 48.6% in 1 pulse for 60 $\mu$sec. The cleavage rate was higher(P＜0.05) in 1 pulse for 30 $\mu$sec(78.4%) and 1 pulse for 60 $\mu$sec(79.4%), than in 2 pulse for 30 $\mu$sec(53.6%). In caprine-bovine NT embryos, the developmental rate of morula and blastocyst stage embryos were 22.6% in interspecies nuclear transfer and 30.6% in parthenotes, which was no significant differed. The developmental rate of morula and blastocyst stage embryos with caprine-porcine NT embryos were lower(P＜0.05) in interspecies nuclear transfer(5.1%) than parthenotes(37.4%).

• Journal of Food Hygiene and Safety
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• v.33 no.1
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• pp.65-70
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• 2018

Monitoring of Listeria monocytogenes, the causative agent of listeriosis, in food is inportant for public health. The Korean Food Standards Codex has adopted a 'zero-tolerance' policy for L. monocytogenes. The standard detection method of L. monocytogenes is based on enrichment. Thus, proper enrichment methods need to be instituted to ensure quality control of the detection procedures. In this study, the growth of L. monocytogenes and Listeria innocua as a mixed culture in Listeria enrichment broth (LEB) was monitored during artificial contamination of enrichment culture. We confirmed competitive growth or interspecies inhibitory activity of L. monocytogenes and L. innocua. Interspecies growth differences and the inhibitory activity of different inoculation and mixtures L. innocua against L. monocytogenes were examined. The concentration of L. monocytogenes must be 2.0 log CFU/mL or more than L. innocua to grow better than L. innocua. It is known that Listeria spp. and L. monocytogenes show growth difference during LEB, resulting in the risk of false-negative results. The inhibition of L. monocytogenes by L. innocua was always observed when present at lower concentrations. However, it was confirmed that L. innocua suppressed when L. monocytogenes was present at a higher concentration. Therefore if a mixture of Listeria spp. is present, detecting L. monocytogenes is difficult. Thus, a new enrichment broth to improve the detection rate of L. monocytogenes is needed.

• Korean Journal of Environment and Ecology
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• v.37 no.5
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• pp.392-402
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• 2023

This study was conducted to understand the characteristics of the plant society in Cheongwansan Provincial Park, which lacks research on plants, and to establish basic data necessary for sustainable vegetation management and provincial park research. This study set up 126 quadrats were installed in Cheongwansan Provincial Park to investigate the species that emerged, and interspecies association analysis was conducted focusing on species excluding rare species. The results were written in a sociogram using the Gephi 0.10 program, modular analysis was conducted to distribute groups between adjacent nodes, and network centrality and structure analysis were conducted. As a result of the analysis, the Smilax china showed the highest frequency of appearance in the survey area. Next, it was found to be high in the order of Quercus serrata, Eurya japonica, Styrax japonicus, and Sasa borealis. Interspecies association analysis was conducted on 69 species excluding rare species, and plant social networks were visualized based on benign binding. The Plant Social Network consists of 69 nodes and 396 connecting lines, and one species formed interspecies bonds with an average of about 17.9 species, connecting each other in 2.3 steps. 69 species were divided into three groups through modular analysis, and the first group consisted mainly of evergreen broad-leaved and trees that appeared in warm-temperate region, and the second group consisted mainly of deciduous broad-leaved. The three groups were mainly divided into trees that grow well in sunny and dry sunlight.

• Bulletin of the Korean Mathematical Society
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• v.49 no.6
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• pp.1255-1262
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• 2012

A type of delayed Lotka-Volterra competition reaction-diffusion system is considered. By constructing a new Lyapunov function, we prove that the unique positive steady-state solution is globally asymptotically stable when interspecies competition is weaker than intraspecies competition. Moreover, we show that the stability property does not depend on the diffusion coefficients and time delays.

• Proceedings of the Korean Society of Embryo Transfer Conference
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• 2003.10a
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• pp.109-109
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• 2003

• The Korean Journal of Malacology
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• v.9 no.2
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• pp.44-56
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• 1993

These studies were conducted to compare the external morphologies of 15 species of land snails in 8 genera of family Bradybaenidae in Korea. Principal component analyses of 15 species can be divided into five groups based on the morphological characters and the result of cluster analyses were in accord with the principal component analyses. The morphological intraspecific similarity of Nesiohelix samarangae of Mitan and Cheju population(S=0.999) proved to be highest. The degree of interspecific similarity between Aegista(Plectotropis)divesa and Aegista(plectotropis)quelpartensis(S=0.970)were more similar than the other interspecies.