• 제목/요약/키워드: Internal transcribed spacer(ITS)

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감자난초 뿌리에서 분리한 내생균의 동정 (Notes on Endophytic Fungi Isolated from Roots of Oreorchis patens in Korea)

  • 이봉형;김동여;박혁;엄안흠
    • 한국균학회지
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    • 제44권3호
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    • pp.184-187
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    • 2016
  • 본 연구에서는 강원도 함백산에서 감자난초(Oreorchis patens)의 뿌리를 채집하여 내생균을 순수분리하였고, 분리된 균주의 형태학적 특징 및 분생포자 등을 관찰하였다. 또한 진균 특이적 primer인 ITS1F와 ITS4를 이용하여 internal transcribed spacer rDNA 영역의 염기서열을 분석하고, primer LR0R과 LR16을 이용하여 large subunit rDNA 영역의 염기서열 분석하여 분자적으로 균을 동정하였다. 그 결과 Thelonectria veuillotiana, Phialocephala humicola 등의 2종의 국내 미기록 내생균을 동정하였고, 이를 보고하고자 한다.

Phylogenetic Analysis of the Genus Dendronephthya (Nephtheidae, Alcyonacea) Based on Internal Transcribed Spacer Sequences of Nuclear rDNA

  • Lee, Young-Ja;Song, Jun-Im
    • Animal cells and systems
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    • 제4권4호
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    • pp.319-324
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    • 2000
  • Species boundaries among the Alcyonacean soft coral, the genus Dendronephthya, are often obscured by inter- and intraspecific morphological variations. In the present study, we attempted to infer the genetic relationships of eight dendronephthians based on their molecular characters, the internal transcribed spacer (ITS) regions of ribosomal DNA, and then compared this result together with the random amplified polymorphic DNA (RAPD) data from our previous investigation. Dendronephthya. putteri and D. suensoni formed a divaricate form - VI grade specific clade, whereas D. castanea, D. gigantea, D. aurea and D. spinifera, formed a umbellate and glomerate form - IV and III grade specific clade. Therefore, we confirmed that the main characters the growth form and the anthocodial grade and formula, are important in identification of the species in dendronephthians despite some problems. Also, the relationships of the growth form are clarified as the glomerate form is much closer to the umbellate form than to the divaricate form based on two sets of independent molecular data. However, we cannot determine the molecular markers which limit the species boundaries among this genus with ITS sequences.

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PCR-DGGE and PCR-RFLP Analyses of the Internal Trascribed Spacer(ITS) of Ribosomal DNA in the Genus Rhizopus

  • Park, You-jung;Park, Young-Keel;Min, Byung-Re
    • Journal of Microbiology
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    • 제41권2호
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    • pp.157-160
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    • 2003
  • To estimate genetic relationships within the genus Rhizopus, genetic variations in 20 strains were investigated by DGGE and PCR-RFLP of rDNA ITS region (ITSI, ITS2,5.8S). The size of the amplified products showed the interspecific polymorphisms, 650 bp,700 bp, and 900 bp. The DGGE approach allowed the separation of PCR amplicons of the same length according to their sequence variations. When the rDNA ITS region was digested with six restriction enzymes, 20 strains were classified into five RFLP haplotypes. The range of similarity between the 20 strains by PCR-RFLP was 42.3-100%. Based on the results of DGGE aud PCR-RFLP, the 20 strains were divided into four groups, R. oryzae, R. stolonifer, R. microsporus and R. homothallicus. Further study of R. homothallicus is required.

Taxonomy of $Ganoderma$ $lucidum$ from Korea Based on rDNA and Partial ${\beta}$-Tubulin Gene Sequence Analysis

  • Park, Young-Jin;Kwon, O-Chul;Son, Eun-Suk;Yoon, Dae-Eun;Han, Woo-Ri-Ja-Rang;Yoo, Young-Bok;Lee, Chang-Soo
    • Mycobiology
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    • 제40권1호
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    • pp.71-75
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    • 2012
  • In the present study, a phylogenetic analysis was undertaken based on the internal transcribed spacer (ITS) rDNA and partial ${\beta}$-tubulin gene sequence of the $Ganoderma$ species. The size of the ITS rDNA regions from different $Ganoderma$ species varied from 625 to 673 bp, and those of the partial ${\beta}$-tubulin gene sequence were 419 bp. Based on the results, a phylogenetic tree was prepared which revealed that Korean $Ganoderma$ $lucidum$ strains belong in a single group along with a $G.$ $lucidum$ strain from Bangladesh.

PCR-based Identification of Microorganisms in a Kefir Grain

  • Koo, Won Hoe;Seo, Min-Gook;Ahn, Jung Hoon
    • 한국해양바이오학회지
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    • 제2권4호
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    • pp.238-244
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    • 2007
  • Nowadays many people are concerned about being healthy, and many dairy products are taken as health supplementary foods. Among dairy products, kefir, also called as Tibet mushroom, is a yogurt fermented by kefir grain, which is a mixture of lactic acid bacteria and yeasts. Although there are many empirical evidences that kefir is very influential for human body, the exact reason is not definitively discovered. Therefore, it would be useful to understand characteristics of a kefir grain and to categorize bacteria in a kefir grain. In this paper, molecular biological apparatus such as PCR, electrophoresis, PCR purification, DNA sequencing were used to identify and classify the species of lactic acid bacteria and yeast in a kefir grain. We used PCR-based identification method using 16S rRNA primer and Internal Transcribed Spacer (ITS) primer. We identified 6 different species which were selected on different medium. In addition, observation with scanning electron microscope (SEM) enabled us to grasp an external shape of the kefir grain. Although we found a limited number of microbial species, more intensive research are needed for extensive identification of microorganism species in Korean kefir grain.

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참당귀에서 분리된 내생균의 다양성과 병원균 억제 효과 (Species Diversity and Antifungal Activity of Endophytic Fungi Isolated from Angelica gigas Nakai)

  • 박혁;정충렬;엄안흠
    • 한국균학회지
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    • 제49권4호
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    • pp.497-505
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    • 2021
  • 다양한 지역에서 채취한 참당귀(Angelica gigas Nakai)의 잎, 줄기, 뿌리에서 내생균을 분리하였다. 내생균 균주는 형태적특징과 ITS (internal transcribed spacer) 지역의 염기서열을 이용하여 동정하였다. 총 35종의 내생균이 동정되었다. 내생균의 다양성은 참당귀의 조직에 따라 다르게 나타났다. 분리된 내생균은 참당귀 점무늬병균 Phoma sp. Y11 균주와 대치배양하여 항균활성을 측정하였다. 총 14종의내생균이균주 Y11에대해억제효과를나타내었다. 본 연구는 참당귀에서 분리한 내생균이 참당귀의 점무늬병에 대한 생물학적 방제제로 사용될 수 있다는 것을 제시하고 있다.

Fourteen Unrecorded Species of Agaricales Underw. (Agaricomycetes, Basidiomycota) from the Republic of Korea

  • Shinnam Yoo;Yoonhee Cho;Ji Seon Kim;Minkyeong Kim;Young Woon Lim
    • Mycobiology
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    • 제50권4호
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    • pp.219-230
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    • 2022
  • Agaricales species form pileate-stipitate fruiting bodies and play important roles in maintaining the terrestrial ecosystem as decomposers, symbionts, and pathogens. Approximately 23,000 Agaricales species have been known worldwide, and 937 species have been recorded in the Republic of Korea. However, most of them were identified solely based on morphological characteristics that often led to misidentifications. The specimens collected from 2018 to 2020 in the Republic of Korea were identified based on phylogenetic analysis of the internal transcribed spacer (ITS) sequences. Their identities were confirmed by microscopic characteristics. As a result, 14 Agaricales species were discovered for the first time in the Republic of Korea. They belonged to nine genera: Agaricus, Calocybe, Cortinarius, Hygrocybe, Inocybe, Lepista, Leucoagaricus, Marasmius, and Psathyrella. Detailed macroscopic and microscopic descriptions were provided to help distinguish these species. The morphological and molecular data provided in this study will serve as reliable references for the identification of Agaricales species.

진딧물의 전 ribosomal RNA 염기배열 (Nucleotide Sequences of an Aphid ribosomal RNA Unit)

  • 권태영;안승락;송철;박종균;김영섭;황재삼;권오유
    • 생명과학회지
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    • 제8권1호
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    • pp.32-39
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    • 1998
  • 진딧물이 하나의 ribosomal RNA 유전자(rDNA)단위는 총 길이가 13,061bp이며 총 G/C비율은 59%이다. 그것을 구성하고 있는 각 영역의 길이와 G/C비율은 다음과 같다. 5’ETS는 G/C비율이 69%이고 843bp이다 . 18S rRNA 는 2,469bp이며 G/C비율은 59%이다. ITS I길이는 229bp이며 70%의 G/C비율이다. 5.8S rRNA는 160bp이며 63%의 G/C비율이다. ITS II는 325bp이며 70%dml G/C비율이다. 28S rRNA는 4, 147bp이고 60%의 G/C비율이다. IGS는 4,888bp로 55%의 G/C비율이다.

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