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Application and perspectives of proteomics in crop science fields (작물학 분야 프로테오믹스의 응용과 전망)

  • Woo Sun-Hee
    • Proceedings of the Korean Society of Crop Science Conference
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    • 2004.04a
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    • pp.12-27
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    • 2004
  • Thanks to spectacular advances in the techniques for identifying proteins separated by two-dimensional electrophoresis and in methods for large-scale analysis of proteome variations, proteomics is becoming an essential methodology in various fields of plant sciences. Plant proteomics would be most useful when combined with other functional genomics tools and approaches. A combination of microarray and proteomics analysis will indicate whether gene regulation is controlled at the level of transcription or translation and protein accumulation. In this review, we described the catalogues of the rice proteome which were constructed in our program, and functional characterization of some of these proteins was discussed. Mass-spectrometry is a most prevalent technique to identify rapidly a large of proteins in proteome analysis. However, the conventional Western blotting/sequencing technique us still used in many laboratories. As a first step to efficiently construct protein data-file in proteome analysis of major cereals, we have analyzed the N-terminal sequences of 100 rice embryo proteins and 70 wheat spike proteins separated by two-dimensional electrophoresis. Edman degradation revealed the N-terminal peptide sequences of only 31 rice proteins and 47 wheat proteins, suggesting that the rest of separated protein spots are N-terminally blocked. To efficiently determine the internal sequence of blocked proteins, we have developed a modified Cleveland peptide mapping method. Using this above method, the internal sequences of all blocked rice proteins (i. e., 69 proteins) were determined. Among these 100 rice proteins, thirty were proteins for which homologous sequence in the rice genome database could be identified. However, the rest of the proteins lacked homologous proteins. This appears to be consistent with the fact that about 30% of total rice cDNA have been deposited in the database. Also, the major proteins involved in the growth and development of rice can be identified using the proteome approach. Some of these proteins, including a calcium-binding protein that fumed out to be calreticulin, gibberellin-binding protein, which is ribulose-1,5-bisphosphate carboxylase/oxygenase activate in rice, and leginsulin-binding protein in soybean have functions in the signal transduction pathway. Proteomics is well suited not only to determine interaction between pairs of proteins, but also to identify multisubunit complexes. Currently, a protein-protein interaction database for plant proteins (http://genome .c .kanazawa-u.ac.jp/Y2H)could be a very useful tool for the plant research community. Recently, we are separated proteins from grain filling and seed maturation in rice to perform ESI-Q-TOF/MS and MALDI-TOF/MS. This experiment shows a possibility to easily and rapidly identify a number of 2-DE separated proteins of rice by ESI-Q-TOF/MS and MALDI-TOF/MS. Therefore, the Information thus obtained from the plant proteome would be helpful in predicting the function of the unknown proteins and would be useful in the plant molecular breeding. Also, information from our study could provide a venue to plant breeder and molecular biologist to design their research strategies precisely.

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3D Generic Vertebra Model for Computer Aided Diagnosis (컴퓨터를 이용한 의료 진단용 3차원 척추 제네릭 모델)

  • Lee, Ju-Sung;Baek, Seung-Yeob;Lee, Kun-Woo
    • Korean Journal of Computational Design and Engineering
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    • v.15 no.4
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    • pp.297-305
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    • 2010
  • Medical image acquisition techniques such as CT and MRI have disadvantages in that the numerous time and efforts are needed. Furthermore, a great amount of radiation exposure is an inherent proberty of the CT imaging technique, a number of side-effects are expected from such method. To improve such conventional methods, a number of novel methods that can obtain 3D medical images from a few X-ray images, such as algebraic reconstruction technique (ART), have been developed. Such methods deform a generic model of the internal body part and fit them into the X-ray images to obtain the 3D model; the initial shape, therefore, affects the entire fitting process in a great deal. From this fact, we propose a novel method that can generate a 3D vertebraic generic model based on the statistical database of CT scans in this study. Moreover, we also discuss a method to generate patient-tailored generic model using the facts obtained from the statistical analysis. To do so, the mesh topologies of CT-scanned 3D vertebra models are modified to be identical to each other, and the database is constructed based on them. Furthermore, from the results of a statistical analysis on the database, the tendency of shape distribution is characterized, and the modeling parameters are extracted. By using these modeling parameters for generating the patient-tailored generic model, the computational speed and accuracy of ART can greatly be improved. Furthermore, although this study only includes an application to the C1 (Atlas) vertebra, the entire framework of our method can be applied to other body parts generally. Therefore, it is expected that the proposed method can benefit the various medical imaging applications.

Materialize the Checklist through Type of Classification analysis for the Regulatory Compliance and Database Encryption, Access Control (데이터베이스 규제 준수, 암호화, 접근제어 유형 분류에 따른 체크리스트 구현)

  • Lee, Byoung-Yup;Park, Jun-Ho;Kim, Mi-Kyoung;Yoo, Jae-Soo
    • The Journal of the Korea Contents Association
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    • v.11 no.2
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    • pp.61-68
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    • 2011
  • Due to the rapid development of the Internet, many companies in a variety of applications to users open an unspecified number of the current business environment, security of personal information about recent issues are often mentioned in terms of its importance may be the company's top priority. The government recently on personal information strengthening measures on information communications network law enacted into law which is applicable to various industries. Companies to protect the personal information of various measures to comply with these regulations, and arrange your personal information for internal management to enhance security fast security solution has been introduced. The number of used data is stored in the DBMS in terms of compliance with these regulations at the same time effectively to ensure data security and encryption measures, access control, audit, each separated by an implementation of the solution and how it compares with the best Database security plan allows you to explore as a this paper's security checklist.

Development of a PC-Based Water Supply Facilities Information System (개인용 컴퓨터를 이용한 상수도 시설물 관리 정보체계 개발)

  • 황국웅;이규석
    • Journal of the Korean Society of Surveying, Geodesy, Photogrammetry and Cartography
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    • v.12 no.2
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    • pp.187-197
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    • 1994
  • The purpose of this study is to develop a PC-based water supply facilities information system. This system will be a major stepping-stone for developing Geographic Information Systems(GIS) in Korea, which is constructed by integrating the technologies related to Automated Mapping(AM) systems and Facilities Management(FM) system. And the results of this study are as follows: (1) After the user needs assessment, it was decided that information management of the water supply facilities including distribution pipes, valves, and leaking management are the most urgent tasks. So, the system was developed focusing on these tasks. (2) After the system design and development, the water supply facilities information system consists of graphic database management system, attribute database management system, internal interface that links graphic data and attribute data, and graphic user interface for user-friendliness. (3) The graphic data and the attribute data including distribution pipes, leading-pipes, valves, and parcels at the study area, Non-Hyun Dong Kang-Nam Gu in Seoul, were used in this system, and the water supply facilities database was established. It was applied to test these facilities, and proved that the system developed in this study is efficient to manage information within the scope of this study. (4) The function using the parcel identification number was efficient to locate the address concerned.

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Design and Implementation of Dynamic Web Server Page Builder on Web (웹 기반의 동적 웹 서버 페이지 생성기 설계 및 구현)

  • Shin, Yong-Min;Kim, Byung-Ki
    • The KIPS Transactions:PartD
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    • v.15D no.1
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    • pp.147-154
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    • 2008
  • Along with the trend of internet use, various web application developments have been performed to provide information that was managed in the internal database on the web by making a web server page. However, in most cases, a direct program was made without a systematic developmental methodology or with the application of a huge developmental methodology that is inappropriate and decreased the efficiency of the development. A web application that fails to follow a systematic developmental methodology and uses a script language can decrease the productivity of the program development, maintenance, and reuse. In this thesis, the auto writing tool for a dynamic web server page was designed and established by using a database for web application development based on a fast and effective script. It suggests a regularized script model and makes a standardized script for the data bound control tag creator by analyzing a dynamic web server page pattern with the database in order to contribute to productivity by being used in the web application development and maintenance.

Search Performance Improvement of Column-oriented Flash Storages using Segmented Compression Index (분할된 압축 인덱스를 이용한 컬럼-지향 플래시 스토리지의 검색 성능 개선)

  • Byun, Siwoo
    • Journal of the Korea Academia-Industrial cooperation Society
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    • v.14 no.1
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    • pp.393-401
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    • 2013
  • Most traditional databases exploit record-oriented storage model where the attributes of a record are placed contiguously in hard disk to achieve high performance writes. However, for search-mostly datawarehouse systems, column-oriented storage has become a proper model because of its superior read performance. Today, flash memory is largely recognized as the preferred storage media for high-speed database systems. In this paper, we introduce fast column-oriented database model and then propose a new column-aware index management scheme for the high-speed column-oriented datawarehouse system. Our index management scheme which is based on enhanced $B^+$-Tree achieves high search performance by embedded flash index and unused space compression in internal and leaf nodes. Based on the results of the performance evaluation, we conclude that our index management scheme outperforms the traditional scheme in the respect of the search throughput and response time.

Network Analysis Using the Established Database (K-herb Network) on Herbal Medicines Used in Clinical Research on Heart Failure (심부전의 한약 임상연구에 활용된 한약재에 대한 기구축 DB(K-HERB NETWORK)를 활용한 네트워크 분석)

  • Subin Park;Ye-ji Kim;Gi-Sang Bae;Cheol-Hyun Kim;Inae Youn;Jungtae Leem;Hongmin Chu
    • The Journal of Internal Korean Medicine
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    • v.44 no.3
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    • pp.313-353
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    • 2023
  • Objectives: Heart failure is a chronic disease with increasing prevalence rates despite advancements in medical technology. Korean medicine utilizes herbal prescriptions to treat heart failure, but little is known about the specific herbal medicines comprising the network of herbal prescriptions for heart failure. This study proposes a novel methodology that can efficiently develop prescriptions and facilitate experimental research on heart failure by utilizing existing databases. Methods: Herbal medicine prescriptions for heart failure were identified through a PubMed search and compiled into a Google Sheet database. NetMiner 4 was used for network analysis, and the individual networks were classified according to the herbal medicine classification system to identify trends. K-HERB NETWORK was utilized to derive related prescriptions. Results: Network analysis of heart failure prescriptions and herbal medicines using NetMiner 4 produced 16 individual networks. Uhwangcheongsim-won (牛黃淸心元), Gamiondam-tang (加味溫膽湯), Bangpungtongseong-san (防風通聖散), and Bunsimgi-eum (分心氣飮) were identified as prescriptions with high similarity in the entire network. A total of 16 individual networks utilized K-HERB NETWORK to present prescriptions that were most similar to existing prescriptions. The results provide 1) an indication of existing prescriptions with potential for use to treat heart failure and 2) a basis for developing new prescriptions for heart failure treatment. Conclusion: The proposed methodology presents an efficient approach to developing new heart failure prescriptions and facilitating experimental research. This study highlights the potential of network pharmacology methodology and its possible applications in other diseases. Further studies on network pharmacology methodology are recommended.

Technology Licensing Agreements from an Organizational Learning Perspective

  • Lee, JongKuk;Song, Sangyoung
    • Asia Marketing Journal
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    • v.15 no.3
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    • pp.79-95
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    • 2013
  • New product innovation is a process of embodying new knowledge in a product and technology licensing is getting popular as a means to innovations and introduction of new product to the market in today's competitive global market environment. Incumbents often rely on technology licensing to access new product opportunities created by other firms. Prior research has examined various aspects of technology licensing agreements such as specific contract terms of licensing agreements, e.g., distribution of control rights, exclusivity of licensing agreements, cross-licensing, and the scope of licensing agreements. This study aims to provide answers to an important, but under-researched question: why do some incumbents initiate more licensing agreement for exploratory learning while others do it for exploitative learning along the innovation process? We attempt to extend our knowledge of licensing agreements from an organizational learning perspective. Technology licensing as a specific form of interfirm linkages can be initiated with different learning objectives along the process of new product innovation. The exploratory stages of the innovation process such as discovery or research stages involve extensive searches to create new knowledge or capabilities, whereas the exploitative stages of the innovation process such as application or test stages near the commercialization are more focused on developing specific applications or improving their efficiency or reliability. Thus, different stages of the innovation process generate different types of learning and the resulting technological resources. We examine when incumbents as licensees initiate more licensing agreements for exploratory learning objectives and when more for exploitative learning objectives, focusing on two factors that may influence a firm's formation of exploratory and exploitative licensing agreements: 1) its past radical and incremental innovation experience and 2) its internal investments in R&D and marketing. We develop and test our hypotheses regarding the relationship between a firm's radical and incremental new product experience, R&D investment intensity and marketing investment intensity, and the likelihood of engaging in exploratory and exploitive licensing agreements. Using data collected from various secondary sources (Recap database, Compustat database, and FDA website), we analyzed technology licensing agreements initiated in the biotechnology and pharmaceutical industries from 1988 to 2011. The results of this study show that incumbents initiate exploratory rather than exploitative licensing agreements when they have more radical innovation experience and when they invest in R&D activities more intensively; in contrast, they initiate exploitative rather than exploratory licensing agreements when they have more incremental innovation experience and when they invest in marketing activities more intensively. The findings of this study contribute to the licensing and interfirm cooperation studies. First, this study lays a foundation to understand the organizational learning aspect of technology licensing agreements. Second, this study sheds lights on how a firm's internal investments in R&D and marketing are linked to its tendency to initiate licensing agreements along the innovation process. Finally, the findings of this study provide important insight to managers regarding which technologies to gain via licensing agreements. This study suggests that firms need to consider their internal investments in R&D and marketing as well as their past innovation experiences when they initiate licensing agreements along the process of new product innovation.

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Literature Review on clinical studies for cold hypersensitivity of hands and feet -Focusing on journals published in Korea (수족냉증의 임상연구에 관한 문헌적 고찰 - 국내에 출판된 논문을 중심으로 -)

  • Lee, Hye-Sol;Han, In-Sik;Sun, Seung-Ho;Kim, Geun-yeob;Go, Ho-Yeon;Kim, Tae-Hoon;Lee, Jin-Moo;Jang, Jun-Bok;Song, Yun-Kyung;Ko, Seong-Gyu;Choi, You-Kyung;Jeong, Jong-Jin;Ko, Youme;Jeong, Keum Ran;Jeon, Chan-Yong
    • Journal of Society of Preventive Korean Medicine
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    • v.21 no.1
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    • pp.83-93
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    • 2017
  • Objectives : This study's aim is to investigate clinical studies of cold hypersensitivity of hands and feet (CHHF) published in Korea and to explore the direct of future research. Methods : We searched clinical studies of CHHF using the database, such as DBpia(http://www.dbpia.co.kr/), NDSL(www.ndsl.kr), OASIS(http://oasis.kiom.re.kr), and RISS(www.riss.kr). The search words were 'cold hypersensitivity(冷症)' and 'syncope(厥證)'. Inclusion criteria were randomized controlled trials (RCTs), non RCTs, Before and after clinical study (B&A) about CHHF. Selection journals and data extraction were conducted by HS Lee and SH Sun independently. Results : Total twenty-one articles were selected finally. RCTs, non-RCTs, and B&A were 3, 12, and 6, respectively. The topics for CHHF were classified into three categories: effect of treatment (n=2) characteristics (n=11), and diagnosis (n=8). Conclusions : This results showed that RCT about CHHF and treatment effect of cold hypersensitivity of hands and feet were small in number. Further systemic and larger studies about CHHF will be needed.

Herbal Medicine for the Treatment of Viral Hepatitis B and C: A Systematic Review of Randomized Controlled Trials (B형 및 C형 간염에 대한 한약 치료의 효과 - 체계적 고찰 연구)

  • Kim, Seung-mo;Lee, Yu-ri;Cho, Na-kyung;Choi, Hong-sik;Kim, Kyung-soon
    • The Journal of Internal Korean Medicine
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    • v.42 no.4
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    • pp.455-474
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    • 2021
  • The aim of this study was to perform a systematic review and meta-analysis of randomized controlled trials (RCTs) that applied herbal medicine to treat viral hepatitis B and C in order to determine the therapeutic efficacy of herbal medicine. EMBASE, Pubmed, NDSL, KMBASE, KISS, KISTI, Koreamed, Koreantk, and Oasis databases were searched to identify RCTs. The selected studies were assessed by the Cochrane group's risk of bias tool. A total of 15 RCTs were selected, and the hepatitis B virus (HBV) DNA reduction was significantly higher in patients treated with herbal medicine combined with Western medicine than in patients treated with herbal medicine. Herbal medicine combined with Western medicine was also superior to Western medicine alone in achieving hepatitis B e-antigen (HBeAg) and alanine aminotransferase [ALT] reduction. Only herbal medicine alone was not superior to Western medicine treatments in achieving HBV DNA, HBeAg, and ALT reduction.