• 제목/요약/키워드: ITS rDNA

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국내 젖소에서 Theileria buffeli 주요 표면 단백질 유전자의 다양성 분석 (The polymorphism of Theileria buffeli major surface protein associate with their clinical signs in holstein in Korea)

  • 유도현;이영화;채준석;박진호
    • 대한수의학회지
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    • 제51권2호
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    • pp.107-115
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    • 2011
  • Theileria (T.) buffeli (formerly T. sergenti/T. orientalis) is the major hemo-protozoan distributed in the Far East Asian countries such as Korea, China and Japan. It is responsible for the clinical symptoms of anorexia, ateliosis, anemia, fever and icterus. It also causes abortion and sudden death under severe cases, resulting in economic losses for many livestock farms. The objective of this study was to analyze the genetic diversity of the major surface protein (Msp) gene in T. buffeli in Holstein in Korea, and we characterized the association of the diversification of the Msp gene and its relationship with the pathogenicity of Theileria. For this, complete blood counts and Theileria PCR sequence analysis were performed from 57 Holstein in Jeju Island. A total of 26 PCR positive Holstein (16 anemic and 10 non-anemic) were then randomly selected based on 18s rRNA sequence typing of the Theileria Msp gene. The DNA sequence of the T. buffeli Msp gene in Holstein showed 99.0%, 99.2%, 99.9%, 99.5%, 98.7%, 98.4% and 98.4% homology with T. sergenti, Theileria spp., T. sergenti, Theileria spp., Theileria spp., Theileria spp. and Theileria spp., respectively. The result showed a genetic variation of 57.7% (type I), 3.8% (type II), 15.4% (type III), 7.7% (type IV), 13.5% (type V) and 1.9% (type VI). Type I is the most frequent type in both anemic and non-anemic Holstein while type II was found in only non-anemic Holstein. This results of our study help confirm the diversity of Msp gene types and demonstrate that the gene type distribution of Msp genes varies among Theileria-infected Holstein in Jeju Island.

Molecular Mechanism of Runx2-Dependent Bone Development

  • Komori, Toshihisa
    • Molecules and Cells
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    • 제43권2호
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    • pp.168-175
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    • 2020
  • Runx2 is an essential transcription factor for skeletal development. It is expressed in multipotent mesenchymal cells, osteoblast-lineage cells, and chondrocytes. Runx2 plays a major role in chondrocyte maturation, and Runx3 is partly involved. Runx2 regulates chondrocyte proliferation by directly regulating Ihh expression. It also determines whether chondrocytes become those that form transient cartilage or permanent cartilage, and functions in the pathogenesis of osteoarthritis. Runx2 is essential for osteoblast differentiation and is required for the proliferation of osteoprogenitors. Ihh is required for Runx2 expression in osteoprogenitors, and hedgehog signaling and Runx2 induce the differentiation of osteoprogenitors to preosteoblasts in endochondral bone. Runx2 induces Sp7 expression, and Runx2, Sp7, and canonical Wnt signaling are required for the differentiation of preosteoblasts to immature osteoblasts. It also induces the proliferation of osteoprogenitors by directly regulating the expression of Fgfr2 and Fgfr3. Furthermore, Runx2 induces the proliferation of mesenchymal cells and their commitment into osteoblast-lineage cells through the induction of hedgehog (Gli1, Ptch1, Ihh), Fgf (Fgfr2, Fgfr3), Wnt (Tcf7, Wnt10b), and Pthlh (Pth1r) signaling pathway gene expression in calvaria, and more than a half-dosage of Runx2 is required for their expression. This is a major cause of cleidocranial dysplasia, which is caused by heterozygous mutation of RUNX2. Cbfb, which is a co-transcription factor that forms a heterodimer with Runx2, enhances DNA binding of Runx2 and stabilizes Runx2 protein by inhibiting its ubiquitination. Thus, Runx2/Cbfb regulates the proliferation and differentiation of chondrocytes and osteoblast-lineage cells by activating multiple signaling pathways and via their reciprocal regulation.

Mineral Phosphate Solubilization by Wild Type and Radiation Induced Mutants of Pantoea dispersa and Pantoea terrae

  • Murugesan, Senthilkumar;Lee, Young-Keun;Kim, Jung Hun
    • 방사선산업학회지
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    • 제3권1호
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    • pp.39-45
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    • 2009
  • Three mineral phosphate solubilizing (MPS) bacteria where isolated from rhizosphere soil samples of common bean and weed plants. 16S rDNA analysis indicated that the isolate P2 and P3 are closely related to Pantoea dispersa while isolate P4 is closely related to Pantoea terrae. Isolates P2 and P3 recorded $381.60{\mu}g\;ml^{-1}$ and $356.27{\mu}g\;ml^{-1}$ of tricalcium phosphate (TCP) solubilization respectively on 3 days incubation. Isolate P4 recorded the TCP solubilization of $215.85{\mu}g\;ml^{-1}$ and the pH was dropped to 4.44 on 24 h incubation. Further incubation of P4 sharply decreased the available phosphorous to $28.94{\mu}g\;ml^{-1}$ and pH level was raised to 6.32. Gamma radiation induced mutagenesis was carried out at $LD_{99}$ dose of the wild type strains. The total of 14 mutant clones with enhanced MPS activity and 4 clones with decreased activity were selected based on solubilization index (SI) and phosphate solubilization assay. Mutant P2-M1 recorded the highest P-solubilizing potential among any other wild or mutant clones by releasing $504.21{\mu}g\;ml^{-1}$ of phosphorous i.e. 35% higher than its wild type by the end of day 5. A comparative evaluation of TCP solubilization by wild type isolates of Pantoea and their mutants, led to select three MPS mutant clones such as P2-M1, P3-M2 and P3-M4 with a potential to release >$471.67{\mu}g\;ml^{-1}$ of phosphorous from TCP. These over expressing mutant clones are considered as suitable candidates for biofertilization.

고도에 따른 한라산 구상나무와 주목의 외생균근균 다양성 비교 (Ectomycorrhizal Fungal Diversity on Abies korea and Taxus cuspidata at Two Altitudes in Mt. Halla)

  • 이지은;엄안흠
    • 한국균학회지
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    • 제47권3호
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    • pp.199-208
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    • 2019
  • 한라산 상부와 하부에 서식하는 구상나무와 주목의 뿌리에서 각각 외생균근균의 군집 구조를 분석하였다. 형태적 특징과 분자적 분석을 통해 구상나무에서는 하부에서 6속 8종, 상부에서 7속 10종의 외생균근균을 확인하였다. 주목에서는 하부에서 4속 8종, 상부에서 6속 10종의 외생균근균을 확인하였다. 외생균근균의 종 다양성 지수, 종 균등도, 종 수는 숙주식물과 관계없이 상부에서 높게 나타난 반면, 균투 수는 하부에서 높게 나타났다. 하부와 상부에서 구상나무와 주목 뿌리의 외생균근균 군집 간의 유사도를 분석한 결과, 고도에 관계없이 구상나무의 뿌리에서 발견된 외생균근균 군집 간의 유사도가 주목 뿌리의 외생균근균 군집 간 유사도나 구상나무 뿌리의 외생균근균 군집과 주목의 뿌리 외생균근균 군집 간의 유사도에 비해 더 높게 나타났다. 이는 구상나무가 주목과는 다른 특이한 외생균근균 군집 구조를 이루고 있으며, 기온 상승으로 멸종 위기에 처한 구상나무의 보전과 자생지 관리에 도움을 줄 수 있을 것으로 판단된다.

A Rare Stinkhorn Fungus Itajahya rosea Attract Drosophila by Producing Chemical Attractants

  • Borde, Mahesh;Kshirsagar, Yogesh;Jadhav, Reshma;Baghela, Abhishek
    • Mycobiology
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    • 제49권3호
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    • pp.223-234
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    • 2021
  • Itajahya rosea was found growing in association with Leucaena leucocephala plants at Savitribai Phule Pune University campus in India. The species identity was confirmed by phylogenetic analysis based on ITS and LSU regions of rDNA, wherein, our fugus was placed along with I. rosea in phylogenetic tree. It represents first record of I. rosea from India. Frequent visitation by Drosophila species on I. rosea fruiting body particularly on gleba was observed. The Drosophila got attracted to the detached gleba under the laboratory conditions and even sometimes, they prefer to sit over the gleba as compare to their food banana. It suggested that I. rosea gleba or pseudostipe produces some compounds for attraction and feeding behavior of Drosophila species. Therefore, we characterized the volatile attractants produced by gleba and pseudostipe of I. rosea by GC-MS analysis. Nineteen compounds were identified from gleba while nine compounds were recovered from the pseudostipe. Out of them, blends of three abundant odor producing volatile compounds were reported namely, Hexadecane, Pentadecane and Nonadecane, which are responsible for attraction of Drosophila toward the gleba. Three fatty acids namely 9,12-octadecadienoic acid (Z,Z), hexadecanoic acid and benzoic acid ethyl ester produced are served as an appetitive signal through olfactory response of Drosophila, so the flies were feed on the gleba. Two pheromones' compounds, heneicosane and (+)-(5S,9S)-5,9-dimethylpentadecane, were also reported in pseudostipe and gleba, respectively, which play a role in Drosophila for breeding. Our study highlights an intriguing chemical ecology of fungus-Drosophila interaction.

담수생태계로부터 분리된 Filosporella 3종의 국내 최초보고 (First report of three Filosporella species isolated from freshwater ecosystem in Korea)

  • 문혜연;오유선;고재덕;정남일
    • 한국균학회지
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    • 제47권2호
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    • pp.165-172
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    • 2019
  • 담수생태계에 서식하는 균류의 다양성을 조사하기 위해 연못과 하천에서 담수퇴적토, 수변식물, 담수침전식물체를 채집하였다. NNIBRFG1552와 NNIBRFG3013은 2016년 제주 남생이못에서 채집한 담수퇴적토와 수변식물에서 각각 분리되었고, NNIBRFG5472는 2018년 충북 보은의 보청천에서 채집한 담수침전식물체에서 분리되었다. 이들 3균주의 형태적 및 분자계통학적 특징을 바탕으로 동정한 결과 NNIBRFG1552, NNIBRFG3013, NNIBRFG5472는 각각Filoporella exilis (100%, KC834046), F. fistucella (99.8%, KC834047), F. cf. annelidica (100%, KC834044)로 확인되었다. 또한, 이들 3개 균주의 배양 및 형태학적 특성이 분자계통학적 분류와 일치되는 것을 확인하였다. Filosporella 속은 국내에서는 보고된 바 없으며 본 보고가 국내 최초이다.

Taxonomy of Arthrinium minutisporum sp. nov., Pezicula neosporulosa, and Acrocalymma pterocarpi: New Records from Soil in Korea

  • Das, Kallol;Lee, Seung-Yeol;Choi, Hyo-Won;Eom, Ahn-Heum;Cho, Young-Je;Jung, Hee-Young
    • Mycobiology
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    • 제48권6호
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    • pp.450-463
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    • 2020
  • The strains 17E-042, 17E-039, and NC13-171 belong to Ascomycota and were isolated from soil collected from Sancheong-gun and Yeongam-gun, Korea. The strain 17E-042 produced white mycelial colonies that developed a sienna color with a round margin on potato dextrose agar (PDA), and the reverse side developed a light sienna color. Morphologically, this strain was similar to the strains of Arthrinium phragmites and A. hydei, but the shorter conidial size of the newly identified strain (17E-042) was distinct. The strain 17E-039 produced macroconidia that were pale yellow to orange-brown, elongated-ellipsoid to oblong, round at both ends, primarily straight but sometimes slightly curved, 0-septate, thin-walled, and filled with numerous droplets, having diameters of 20.4-34.3 × 8.0-12.0 ㎛. And the strain NC13-171 formed hyaline to light brown chlamydospores, solitary or in a chain. Multigene phylogenetic analyses were conducted using sequence data obtained from internal transcribed spacer (ITS) regions, 28S rDNA large subunit (LSU), β-tubulin (TUB2), translation elongation factor 1-alpha (TEF1-α), and RNA polymerase II large subunit (RPB2) genes. The results of molecular phylogeny, the detailed descriptions and illustrations of each species strongly support our proposal that these strains from soil in Korea be designated as Arthrinium minutisporum sp. nov. and two new records of Pezicula neosporulosa and Acrocalymma pterocarpi.

Isolation and Cytotoxic Potency of Endophytic Fungi Associated with Dysosma difformis, a Study for the Novel Resources of Podophyllotoxin

  • Hoa Thi Tran;Giang Thu Nguyen;Hong Ha Thi Nguyen;Huyen Thi Tran;Quang Hong Tran;Quang Ho Tran;Ngoc Thi Ninh;Phat Tien Do;Ha Hoang Chu;Ngoc Bich Pham
    • Mycobiology
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    • 제50권5호
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    • pp.389-398
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    • 2022
  • Endophytic fungi are promising sources for the production of podophyllotoxin-an important anticancer compound, replacing depleted medical plants. In this study, the endophytes associated with Dysosma difformis-an ethnomedicinal plant species were isolated to explore novel sources of podophyllotoxin. Fifty-three endophytic fungi were isolated and identified by morphological observation and ITS-based rDNA sequencing, assigning them to 27 genera in 3 divisions. Fusarium was found the most prevalent genus with a colonization frequency of 11.11%, followed by Trametes (9.26%) and Penicillium (7.41%). Phylogenetic trees were constructed for the endophytic fungi community in two collection sites, Ha Giang and Lai Chau, revealing the adaptation of the species to the specific tissues and habitats. Cytotoxic activity of endophytic fungal extracts was investigated on cancer cell lines such as SK-LU-1, HL-60, and HepG2, demonstrating strong anti-cancer activity of six isolates belonging to Penicillium, Trametes, Purpureocillium, Aspergillus, and Ganoderma with IC50 value of lower than 10 ㎍/mL. The presence of podophyllotoxin was indicated in Penicillium, Trametes, Aspergillus and for the first time in Purpureocillium and Ganoderma via high-performance liquid chromatography, which implied them as a potential source of this anticancer compound.

Phylogeny, Morphology and Pathogenicity of Biscogniauxia mediterranea Causing Charcoal Canker Disease on Quercus brantii in Southern Iran

  • Samaneh, Ahmadi;Fariba, Ghaderi;Habiballah, Charehgani;Soraya, Karami;Dariush, Safaee
    • 식물병연구
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    • 제28권4호
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    • pp.209-220
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    • 2022
  • Charcoal canker of oak, which has recently increased in southern Iran, could pose a serious threat to the entire forest ecosystem in the near future. In addition, it seems that climate change and its consequences, such as drought in the southern regions of Iran, have exacerbated this phenomenon. Consequently, the objective of this study was to identify the fungal pathogens that could cause charcoal canker disease in the oak forests of South Zagros. It was also sought to find associations between changes in the occurrence/exacerbation of charcoal canker disease under non and intense drought stress in non-inoculated or inoculated Quercus brantii seedlings. In total, 120 isolates were obtained from eight oak forests located in the Zagros Mountains of Southern Iran, Kohgiluyeh & Boyer-Ahmad and Fars provinces, which were classified as Biscogniauxia mediterranea based on morphological assessment. Subsequently, molecular assay confirmed the result by phylogenetic inference of internal transcribed spacer-rDNA regions, α-actin, and β-tubulin genes. The results of the pathogenicity test showed that the response of isolates of B. mediterranea (Iran-G1 and Iran-M70) was varied in different environments for the measured necrotic lesion length. In comparison with the control moisture treatments (non-stress), the necrotic lesion length in inoculated treatments increased under intense drought stress. In general, inoculated oak seedlings' exposure to water-deficient stress by the pathogen of B. mediterranea could affect the spread/severity of the charcoal canker disease.

독도 왕호장근 근권 토양에서 분리된 미기록 균류 (Unrecorded Fungi Isolated from Rhizosphere Soil of Fallopia sachalinensis in Dokdo Islands)

  • 유영현;성한중;Manh Ha Nguyen;박종명;홍지원;지원재;김보미;김대호
    • 한국균학회지
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    • 제51권3호
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    • pp.251-257
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    • 2023
  • 독도에 자생하는 식물인 왕호장근(Fallopia sachalinensis)의 근권 토양에서 다양한 균류를 분리하였다. 분리균들의 형태적 특징과 rDNA-ITS와 LSU 또는 beta-tubulin 영역 분석을 통한 분자적 특징을 확인하였다. 그 결과 기존에 국내에 보고되지 않은 Penicillium striatisporum, Gongronella sichuanensis 종들이 분리되어 이를 보고하고자 한다. 미기록 종들의 형태적 특징과 분자적특징을 본문에 기술하였다.