• Title/Summary/Keyword: Habitat

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Discrimination of Flaviviruses with High Frequency of Infection in Asian Countries: Epitope Prediction by Bioinformatic Approaches (아시아 국가 내에서 감염빈도가 높은 플라비바이러스의 구별: 생물정보학적 접근을 통한 항원결정기 예측)

  • Choi, Jae-Won;Jo, Byung-Gwan;Kim, Min Jung;Park, Suji;Kim, Hak Yong
    • The Journal of the Korea Contents Association
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    • v.18 no.4
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    • pp.99-113
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    • 2018
  • Recently, global warming has widened the habitat of mosquitoes and infection chances for mosquito-borne diseases are increasing. Flavivirus is a typical mosquito-borne virus. Flaviviruses with a relatively high frequency of infection in Asian countries include Zika, Dengue, and Japanese encephalitis viruses. Although distinctive diagnosis of flaviviruses is required because the symptoms and therapeutic method differ, there is no diagnostic method that can distinguish them accurately yet. In this study, we propose distinctive diagnosis method of flaviviruses using informations and analysis tools constructed in bioinformatic databases. The envelope protein and non-structural protein 1 which are useful protein for the immuno-diagnostics of three flaviviruses were selected. Their homology was analyzed by multiple sequence alignments and epitope candidates consisting of 10-15 amino acids were selected. Finally two epitopes were suggested to be most useful by immunogenicity analysis and 3D structure prediction. These approaches and results are expected to be great value in the distinctive diagnosis of three flaviviruses with a high frequency of infection in Asian countries.

Zooplankton Community in the Front Zone of the East Sea of Korea (the Sea of Japan) : 1. Species List, Distribution of Dominant Taxa, and Species Association (동해 전선역 동물플랑크톤 군집 : 1. 종 목록, 우점종 분포, 종간 유연관계)

  • PARK Chul;CHOI Joong Ki
    • Korean Journal of Fisheries and Aquatic Sciences
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    • v.30 no.2
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    • pp.225-238
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    • 1997
  • Zooplankton distribution in the front zone was investigated in the East Sea of Korea (Sea of Japan). More than 100 taxa appeared in the study area, which was far diverse appearance being compared with those in West (Yellow Sea) and South Sea of Korea. In Nov. 1994, Paracalanus parvus, Oikopleura spp., and Noctiluca scintillans, which preferred warmer environment, predominated at the collection sites in the front zone, especially at warmer surface layer. But in Nov. 1995, when the surface water temperatures were about $2^{\circ}C$ lower than those of the previous year, cold water species of copepod Metridia lucens, immature forms of Calanus and Sagitta, and crustacean eggs dominated in the collection sites in front zone, which were geographically not Identical with those of the previous year. Vertical distributional patterns were not coincide among the taxa. This suggests that zooplankton has different specific habitat characteristics with temperatures. In general, those taxa with preference of warmer environments showed high probability of co-occurrance with low abundances while those that preferring colder environments showed low probability of co-occurrance with high abundances. It seems that warm water contributes to the high diversity of zooplankton in the front zone while cold water does to the high biomass.

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Effects of Stream Modification in the Seomjin River on the Fish Communities of the Dongjin River in Korea (섬진강의 유로변갱이 동진강 어류군집에 미치는 영향)

  • KIM Ik-Soo;LEE Wan-Ok
    • Korean Journal of Fisheries and Aquatic Sciences
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    • v.17 no.6
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    • pp.549-556
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    • 1984
  • Forty-eight fish species belonging to 38 genera and 10 families were collected along the Dongjin River from July 1982 to May 1984. The dominant species of them were Rhinogobius brunneus and Zacco platypus in the main stream and Abbottina springeri, Hemiculter eigenmanni and Moroco oxycephalus in the tributaries respectively. It was remarkable point in the distributional study of freshwater-fishes of Korea that both species of Pelteobagrus nitidus and Lefua costata were observed in the present studied areas for the first time. It was found that 6 species of Hypomesus olidus, Hemiculter eigenmanni, Pseudobagrus sp., Liobagrus mediadiposalis, Cobitis taenia striata, and Lepomis macrochirus inhabiting the seomjin River were unstably incorporated into the fish communities at the upper reaches of the Dongjin River which the Seomjin River flow down for the water power generation. It is suggested that the integradation between two subspecies of C. taenia occurs at the intermediate water areas in the mainstream of the Dongjin River, whereas C. t. striate is remained only at the upper reaches and C. t. lutheri is lived in the lower parts of the river. Population of C. koreensis found in the mainstream was exhibited considerable differences in the color patterns on the body sides of them in comparison with other populations, which was discussed in relation to the habitat variations adapted to the confluent condition of joining the Seomjin stream with the Dongjin River.

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Effects of Photoperiod and Temperature on the Gonadal Activity in Small Filefish, Rudarius ercodes (그물코쥐치, Rudarius ercodes의 생식활동에 미치는 광주기 온도 영향)

  • LEE Taek Yuil;HANYU Isao;FURUKAWA Kiyoshi
    • Korean Journal of Fisheries and Aquatic Sciences
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    • v.17 no.6
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    • pp.523-528
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    • 1984
  • The small filefish, Rudarius ercodes, generally spawning from mid May to early October in the natural habitat, was exposed to various photoperiod and temperature regimes. These environmental effects on the gonad activity, regression and recrudescence were experimentally investigated based on the mechanism of reproductive cycle. Spawning season was initiated in the early spring with the gonad activated by long photoperiod(13L) and stimulated by compensatory temperature rising. Even when the gonad activated readily at the above critical daylength (12L to 13L)was kept back at the below if, it went on maturing. At the end of spawning period (mid September), since the shortening of daylength (12L) resulted in the gonad regression regardless of temperature, the short daylength might be related to the termination of spawning in situ. When the regressive gonad at the post spawning period was treated by the above 13L: $20^{\circ}C$ condition, it could recrudesce and bring forth even spawning. From this fact, the feasible control of annual reproductive cycle of small filefish was recognized. But even in the long daylength, the temperature above $28^{\circ}C$ was preventive of gonad maturation.

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Mosquito Control Efficacy of a BtPlus Insecticide and Its Safety Assessment to Aquatic Environment (비티플러스 살충제의 모기 방제 효과 및 환경생물에 대한 안전성 평가)

  • Park, Youngjin;Ryu, Sungmin;Kwon, Bowon;Park, Chan;Kim, Jin;Kim, Yonggyun
    • The Korean Journal of Pesticide Science
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    • v.20 no.3
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    • pp.181-188
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    • 2016
  • BtPlus is a group of biopesticides that are made of Bacillus thuringiensis and immunosuppressant. A new BtPlus that exhibits high insecticidal activity against mosquito larvae has been investigated in control efficacy in field conditions and its environmental safety against aquatic system. This study assessed the control efficacy of BtPlus against mosquito larvae with two different application methods. In aerial spraying application (100 mL per $3.3m^2$), BtPlus was effective at 50% or above formulation concentrations to control mosquito larvae. For a direct application to aqueous mosquito habitat, a semi-field mimicking paddy rice field was constructed. In this condition, BtPlus showed 80% and 100% control efficacies at 0.1% and 0.2% concentrations, respectively. BtPlus also showed 40% mortality against adults at 0.1% concentration in 10% sugar bait. However, its control efficacies against adults were much less than against larvae. Safety assessment of BtPlus against ecosystem was evaluated using young carp (Cyprinus carpio), a water flea (Daphnia magna), and a honey bee (Apis mellifera). BtPlus did not give any adverse effects on these nontarget organisms. Based on these results, BtPlus can be applied to control mosquitoes by direct aqueous application to paddy rice field.

Improvement of Manila Clam (Ruditapes philippinarum) Habitat Condition by Adding Crushed Oyster (Crassostrea gigas) Shells to the Substratum (굴 패각을 이용한 바지락 양식장 저질개선 효과)

  • Park, Kwang-Jae;Yoon, Sang-Pil;Song, Jae-Hee;Han, Hyun-Seob;O, Hae-Chong
    • The Korean Journal of Malacology
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    • v.27 no.4
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    • pp.291-297
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    • 2011
  • In an attempt to improve the substrate condition for Manila clam (Ruditapes philippinarum) culture, crushed oyster (Crassostrea gigas) shells were spread on the muddy tidal flat of Namseong-ri, Podu-myeon, Goheung-gun, Jeollannam-do in April 2008. To test the suitability of the crushed oyster shell added substrate, seed clams were transplanted from Taehwa river estuary in Ulsan city in June 2008. Over 23 months of sampling, the mean grain size and the sorting in the experimental site containing the crushed oyster shell were significantly higher than the control site. The ignition loss, water content, chemical oxygen demand (COD) and acid-volatile sulfide (AVS) level were also significantly higher in the crushed oyste shell added substratum. Survival of the clams transplanted to the crushed oyster shell added substratum was significantly higher and all the clams transplanted to the normal muddy substratum died in August 2009, 13 months after the transplantation. At the end of the experiment in April 2010, the transplanted clams reached 36.10 mm in shell length and 8.92 g in total weight with survival of 43.5%. Our study suggested than crushed oyster shell added in the mud dominant substratum greatly improved living condition and survivability of clams.

Quantified Analyses of Musk Deer Farming in China: A Tool for Sustainable Musk Production and Ex situ Conservation

  • Meng, Xiuxiang;Gong, Baocao;Ma, Guang;Xiang, Leilei
    • Asian-Australasian Journal of Animal Sciences
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    • v.24 no.10
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    • pp.1473-1482
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    • 2011
  • Adult male musk deer (Moschus spp.) secrete musk, a widely used ingredient in traditional Asian medicine and the international perfume industry. Musk deer are endangered due to historic over-utilization of musk and habitat loss. Musk deer farming, provides an important way of conserving musk deer and ensuring a sustainable musk supply. For over 50 years musk deer farming has been conducted in China with the endangered Alpine musk deer (Moschus sifanicus) the predominant farmed musk deer species. To date, few studies have examined the musk production of captive musk deer. This study analyzed musk-extraction data collected from 1997 to 2009 at Xinglongshan Musk Deer Farm, Gansu, China. The musk-extraction ratio (MER) of captive male musk deer was 90.30% (n = 732), while the annual average musk extraction (AME) per animal was $7.90{\pm}0.17\;g$ with the range from 0.00 g to 34.20 g (n = 732). The origin of the deer had an influence on AME and MER production, with male wild-captured (WC) individuals recording higher values (AME, $8.76{\pm}0.27\;g$, n = 272; MER, 93.75%, n = 272) than those of captive breeding (CB) males (AME: $7.39{\pm}0.22\;g$, n = 460; MER: 88.26%, n = 460). The origin of an individual's parents, however, did not influence AME and MER. Age also influenced musk production with the MER of 1.5-year-old males being 87.5% with an average musk production of $8.27{\pm}0.47\;g$ (n = 96). The peak period for musk production was from 1.5 to 8.5 years of age. The results of our study demonstrate musk deer farming could work as an effective measure to protect musk deer and provide sustainable musk resources, however, the musk production including MER and AME could be improved through optimizing the managing and breeding system in endangered musk deer farming.

Characterization of Termite Inhabitation Environment on Wooden Cultural Heritages (목조문화재 흰개미 서식환경 특성 연구)

  • Seo, Min Seok;Jo, Chang Wook;Kim, Soo Ji;Kim, Young Hee;Hong, Jin Young;Lee, Jeung Min;Jeong, So Young
    • Journal of Conservation Science
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    • v.31 no.4
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    • pp.387-393
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    • 2015
  • Damages of wooden cultural heritages caused by various bio-species have been a trend that is increasing on climate change. The decay and bio-damage caused by microbial organisms or insect species are also known to factors of the shape changes and structural problems of wooden cultural heritages. There are so many phenomenons of damage and weathering in wooden cultural heritage for many years and particularly termite can threaten seriously wooden cultural heritage. We investigated with respect to internal and external environment and termite inhabitation around the wooden cultural heritage in Jeollanam-do, Jeollabuk-do, and Jeju-do. As this investigation results, we confirmed that there were the difference in between resident and non-resident about temperature, humidity, moisture contents of wooden building. Resident building is high temperature but humidity and moisture contents is low and these factors are sources of inhabitation condition change about insects as termites. Now we suggest to carry out in parallel to the target wooden cultural heritage and the surrounding habitat for wooden cultural heritage termite damage investigation. Also with the chemical control methods, we must consider necessary to present eco-friendly control management such as construction of heating facilities, residential status, periodic management.

Actual Vegetation of Dodamsambong (Scenic Site no. 44) and Danyangseokmoon (Scenic Site no. 45) in Danyang-gun (단양군 도담삼봉과 단양석문 일대의 현존식생)

  • Choi, Byoung-Ki
    • Journal of the Korean Institute of Traditional Landscape Architecture
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    • v.32 no.2
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    • pp.116-123
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    • 2014
  • The description of vegetation cover and floral composition was undertaken in terms of phytosociological study in Dodamsambong(scenic site no. 44) and Danyangseokmoon(no. 45). In this study a total of 17 $relev{\acute{e}}s$ containing 144 taxa were collected and analyzed. Eight plant communities are differentiated, grouped into 4 physiognomic types: forest type(Buxus microphylla var. koreana-Thuja orientalis community, Tilia mandshurica-Quercus variabilis community, and Cynanchum wilfordii-Pinus densiflora community), mantle type(Cardamine leucantha-Neillia uekii community), secondary meadow type(Galium kinuta-Spodiopogon sibiricus community, Diarthron linifolium-Zoysia japonica community), and crevice type(Patrinia rupestris-Selaginella stauntoniana community, Hypodematium glandulosopilosum community). The vegetation of Dodamsambong and Danyangseokmoon is characterized by local flora, such as calciphilous plants, geological distribution-limit species, and endemic species. The soil depth, slope, and human impact have been identified as the most important differentiating ecological factors. Buxus microphylla var. koreana-Thuja orientalis community, Tilia mandshurica-Quercus variabilis community, and Patrinia rupestris-Selaginella stauntoniana community were evaluated highly by National Vegetation Naturalness. In order to restore the value of specific landscape for scenic site, we should improve the problems of protected area such as wrong management on habitat, forest fragmentation by facilities and decline in vegetation by lack of growing the next succession.

Effects of Suspended Solid and Cadmium on the Shallow-sea Foodweb Ecosystem -1. Reduction of Growth Rate and Biomass Yield of Coastal Diatom Clones by Cadmium- (천해역 먹이망 생태계에 대한 무기부유입자와 카드뮴의 영향 -I. 연안역 규조류 단종배양체의 성장률과 생체량증가에 대한 카드뮴의 저해효과-)

  • YIH Wonho;YANG Jae Sam;JO Soo-Gun;CHUNG Ee-Yung
    • Korean Journal of Fisheries and Aquatic Sciences
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    • v.27 no.4
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    • pp.373-379
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    • 1994
  • Final biomass yields(cells/ml) and growth rates(divisions/day) of 4 clones of marine diatoms isolated from the Korean coastal waters were measured in media with 6 different levels of added cadmium concentrations. A neritic diatom, GS-12(Chaetoceros sp.), showed no growth at 0.1ppm cadmium, and its $IC_{50}$ for final biomass yield and growth rate was 0.03 and 0.02ppm, respectively. Two clones isolated from tidal pool, NC-37 and NC-29, showed enhanced tolerance to cadmium toxicity. Extremely high tolerance to cadmium addition was found in J-21 from a eutrophicated bay, with its high $IC_{50}$ for biomass yield(1.07ppm) and growth rate(1.92ppm). Present results implied a habitat related pattern of coastal diatom clones in the cadmium tolerances. Except GS-12, the other three diatom clones are considered to be highly tolerant to cadmium stresses.

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