• Title/Summary/Keyword: HABs

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Prediction of cyanobacteria harmful algal blooms in reservoir using machine learning and deep learning (머신러닝과 딥러닝을 이용한 저수지 유해 남조류 발생 예측)

  • Kim, Sang-Hoon;Park, Jun Hyung;Kim, Byunghyun
    • Journal of Korea Water Resources Association
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    • v.54 no.spc1
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    • pp.1167-1181
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    • 2021
  • In relation to the algae bloom, four types of blue-green algae that emit toxic substances are designated and managed as harmful Cyanobacteria, and prediction information using a physical model is being also published. However, as algae are living organisms, it is difficult to predict according to physical dynamics, and not easy to consider the effects of numerous factors such as weather, hydraulic, hydrology, and water quality. Therefore, a lot of researches on algal bloom prediction using machine learning have been recently conducted. In this study, the characteristic importance of water quality factors affecting the occurrence of Cyanobacteria harmful algal blooms (CyanoHABs) were analyzed using the random forest (RF) model for Bohyeonsan Dam and Yeongcheon Dam located in Yeongcheon-si, Gyeongsangbuk-do and also predicted the occurrence of harmful blue-green algae using the machine learning and deep learning models and evaluated their accuracy. The water temperature and total nitrogen (T-N) were found to be high in common, and the occurrence prediction of CyanoHABs using artificial neural network (ANN) also predicted the actual values closely, confirming that it can be used for the reservoirs that require the prediction of harmful cyanobacteria for algal management in the future.

Removal Efficiency of Non-point Source Pollutants through Constructed Wetland: Case Study of Annaecheon Wetland in Daecheong Reservoir (인공습지를 이용한 호소 유입 비점오염물질 제거 효율 평가: 대청호 안내천 습지 사례 분석)

  • Pyeol-Nim Park;Young-Cheol Cho
    • Journal of Environmental Impact Assessment
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    • v.32 no.5
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    • pp.291-304
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    • 2023
  • Harmful algal blooms (HABs) have become an increasing concern in terms of human health risks as well as aesthetic impairment due to their toxicity. The reduction of water pollutants, especially nutrients from non-point sources in a reservoir watershed, is fundamental for HABs prevention. We investigated the pollutant removal efficiencies of a constructed wetland to evaluate its feasibility as a method for controlling non-point sources located in the Annaecheon stream within the Daecheong Reservoir watershed. The overall removal efficiencies of pollutants were as follows: BOD 14.3%, COD 17.9%, SS 50.0%, T-N 19.0%, and T-P 35.4%. These results indicate that constructed wetlands are effective in controlling pollutants from non-point sources. The seasonal variation in removal efficiency depended on the specific pollutants. The removal efficiencies of BOD, COD, and T-N were stable throughout the year, except during winter, which might have been influenced by lower microorganism activity. In contrast, T-P showed a consistent removal efficiency even during the winter season, suggesting that the wetland can reduce external phosphorus loading to the reservoir. Regarding the effects of pollutant loadings on removal efficiency, the effluent concentrations of all pollutants were significantly decreased compared to those in the influent in case of middle and high loadings. This demonstrates that constructed wetlands can handle high pollutant loads, including the initial runoff during rainfall, to prevent reservoir eutrophication. Despite the various strengths of wetland water purification, there are limitations as passive treatment. Therefore, more case studies should be conducted to suggest optimum operational conditions for constructed wetlands, taking into consideration reservoir-specific characteristics.

Application of Image Analysis System for Red Tide Organisms

  • Cho Eun Seob;Kang Yoon Mi;Kim Gwang Hoon
    • Fisheries and Aquatic Sciences
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    • v.2 no.2
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    • pp.172-175
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    • 1999
  • Relative DNA contents in some harmful algae were measured using DAPI staining and image analysis system. This method was useful to identify some morphologically similar species and isolates from harmful algal blooms (HABs). In exponential phase, Prorocentrum micans had higher relative DNA content (RD) of $1.83\pm0.52$ than any other isolates, followed by Cochlodinium polykrikoides $(1.10\pm0.46)$ Alexandrium tamarense $(0.93\pm0.32)$ Gyrodinium impudicum $(0.56\pm0.17)$, Scrippsiella trochoidea $(0.41\pm0.26)$ and P. minimum$(0.05\pm0.01)$. When they were fixed with Lugol's solution, it was difficult to d,iscern C. polykrikoides from G. impudicum under the light microscope, but the DNA contents were quite different in two species. C. polykrikoides contained about twice as much RD as G. impudicum under the same culture conditions and exponential phase. DAPI­stained DNA feature in C. polykrikodes showed concentrated in the peripheral part of the cell, but in G. impudicum showed a compact structure in the central part. Although A. tamarense and S. trochoidea were morphologically similar under the light microscope, nuclear DNA content of A. tamarense was twice as much as that of S. trochoidea.

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Draft Genome Database Construction from Four Strains (NIES-298, FCY-26, -27, and -28) of the Cyanobacterium Microcystis aeruginosa

  • Rhee, Jae-Sung;Choi, Beom-Soon;Han, Jeonghoon;Hwang, Soon-Jin;Choi, Ik-Young;Lee, Jae-Seong
    • Journal of Microbiology and Biotechnology
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    • v.22 no.9
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    • pp.1208-1213
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    • 2012
  • Microcystis aeruginosa is a cyanobacterium that can form harmful algal blooms (HABs) producing toxic secondary metabolites. We provide here draft genome information of four strains of this freshwater cyanobacterium that was obtained by the Next Generation Sequencing approach to provide a better understanding of molecular mechanisms at the physiological and ecological levels. After gene assembly, genes of each strain were identified and annotated, and a genome database and G-browser of M. aeruginosa were subsequently constructed. Such genome information resources will enable us to obtain useful information for molecular ecological studies with a better understanding of modulating mechanisms of environmental factors associated with blooming.

Spatio-temporal Distribution of Dinoflagellate Resting Cysts at the Saemangeum Area (새만금 해역에서 와편모조류 휴면포자의 시공간적 분포)

  • PARK Gi-Hong;KIM Keun-Yong;KIM Chang-Hoon;KIM Hak Gyoon
    • Korean Journal of Fisheries and Aquatic Sciences
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    • v.37 no.3
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    • pp.202-208
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    • 2004
  • The spatio-temporal distribution of dinoflagellate resting cysts was investigated by palynological processing to understand the harmful algal bloom (HAB) potential in the sediment of the Saemangeun area in 2003. In total, thirty-two dinoflagellate species were identified, and their concentrations were in the range of $6-1,618\;cysts{\cdot}g^{-1}$ (dry weight). The concentrations of resting cysts were higher in the spring (26 species, $64-1,101\;cysts{\cdot}g^{-1})$ and summer (30 species, $81-1,618\;cysts{\cdot}g^{-1})$ than in the autumn (32 species, $6-1,150\;cysts{\cdot}g^{-1})$ and winter (24 species, $25-728\;cysts{\cdot}g^{-1}).$ The composition rate of the heterotrophic dinoflagellate species to the total, which is closely related to the eutrophication process, to ranged from 6 to $29\%$ in the study area. The most dominant species was toxic Alexandrium tamarense/catenella $(25\%)$ followed by Gonyaulax scrippsea $(9\%)$ and toxic Protoceratium reticulatum $(5\%).$ Given the high abundance of the toxigenic dinoflagellate species, the Saemangeun area is considered to have the great potential for HABs in the future.

The Rapid Differentiation of Toxic Alexandrium and Pseudo-nitzschia Species Using Fluorescent Lectin Probes

  • Cho, Eun-Seob;Park, Jong-Gyu;Kim, Hak-Gyoon;Kim, Chang-Hoon;Rhodes, Lesley L.;Chung, Chang-Soo
    • Journal of the korean society of oceanography
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    • v.34 no.3
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    • pp.167-171
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    • 1999
  • Since toxic Alexandrium catenella and non-toxic A. fraterculus are morphologically similar, they are difficult to discriminate under the light microscope. However, a novel technology, such as fluorescein isothiocyanate (FITC)-conjugated lectin probes enables easy and rapid differentiation. Toxic A. catenella bound seven different lectins, whereas the non-toxic A. fratercuzus did not bind Arachis hypogaea (PNA) lectin. In addition, Pseudo-nitrschia species in this study were also difficult to identify to species level with light microscope techniques, but it was possible to classify them using fluorescent lectins. Pseudo-nitzschia multistriata, P. subfraudulenta and P. pungens bound Canavalia ensiformis (ConA), whereas P. subpaclfica did not, and P. pungens also bound Ricinus communis (RCA). These results imply that lectin could be used as a critical tool in the differentiation of P. multistriata, P. subfraudulenta and P. pungens. However, P. subpacifica was not differentiated by the lectins tested. Therefore, it isconcluded that lectin probes are useful for discriminating toxic A. catenella from non-toxic A. fraterculus, and for the identification of some Pseudo-nitzschia species. In addition, this method has a great potential to speed and detection between non-toxic and toxic harmful algal blooms (HABs) in Korean biotoxin monitoring systems.

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A Study on the Relationship between Cyanobacteria and Environmental Factors in Yeongcheon Lake (영천호에서 남조류 발생과 환경요인의 관련성 연구)

  • Lee, Hyeon-Mi;Shin, Ra-Young;Lee, Jung-Ho;Park, Jong-geun
    • Journal of Korean Society on Water Environment
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    • v.35 no.4
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    • pp.352-361
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    • 2019
  • The purpose of this study is to analyze the characteristics and correlations of the Yeongcheon Lake in order to reduce the occurrence of harmful cyanobacteria. In this study, we investigated the water quality and phytoplankton of the lake from May to November in 2017. Correlation and data mining analyses were performed to analyze the relationship between the two factors. The water temperature was lowest at the point where the Yeongcheon Lake inflow occurs at Imha Lake. It was highest at the point where the outflow occurs to Angye Lake. The pH was also highest at the outflow point, but in the case of DO, it was highest at the midpoint between the inflow and outflow. The main cyanobacteria that emerged during the study period were Oscillatorialimosa, Microcysti saeruginosa and Aphanizomenon flos-aquae. As a result of correlation analysis, the water temperature, inflow, COD loading, TOC loading at the inflow point of the Yeongcheon Lake were the items that were related to the harmful cyanobacteria. The data mining analysis indicated that the TP loading and harmful cyanobacteria in the inflow point of the Yeongcheon Lake were influential on the detrimental cyanobacteria in the Yeongcheon Lake outflow point. When the TP loading was less than 39.0 kg/day at the inflow site, it was expected that the amount of harmful cyanobacteria could be maintained below 10,000 cells/mL.

Quantification of the ichthyotoxic raphidophyte Chattonella marina complex by applying a droplet digital PCR

  • Juhee, Min;Kwang Young, Kim
    • ALGAE
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    • v.37 no.4
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    • pp.281-291
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    • 2022
  • Quantifying the abundance of Chattonella species is necessary to effectively manage the threats from ichthyotoxic raphidophytes, which can cause large-scale mortality of aquacultured fish in temperate waters. The identification and cell counting of Chattonella species have been conducted primarily on living cells without fixation by light microscopy because routine fixatives do not retain their morphological features. Species belonging to the Chattonella marina complex, including C. marina and C. marina var. ovata, had high genetic similarities and the lack of clear morphological delimitations between the species. To estimate the abundance of C. marina complex in marine plankton samples, we developed a protocol based on the droplet digital polymerase chain reaction (ddPCR) assay, with C. marina complex-specific primers targeting the internal transcribed spacer (ITS) region of the rDNA. Cell abundance of the C. marina complex can be determined using the ITS copy number per cell, ranging from 25 ± 1 for C. marina to 112 ± 7 for C. marina var. ovata. There were no significant differences in ITS copies estimated by the ddPCR assay between environmental DNA samples from various localities spiked with the same number of cells of culture strains. This approach can be employed to improve the monitoring efficiency of various marine protists and to support the implementation of management for harmful algal blooms, which are difficult to analyze using microscopy alone.

Red to Red - the Marine Bacterium Hahella chejuensis and its Product Prodigiosin for Mitigation of Harmful Algal Blooms

  • Kim, Doc-Kyu;Kim, Ji-Hyun F.;Yim, Joung-Han;Kwon, Soon-Kyeong;Lee, Choong-Hwan;Lee, Hong-Kum
    • Journal of Microbiology and Biotechnology
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    • v.18 no.10
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    • pp.1621-1629
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    • 2008
  • Harmful algal blooms (HABs), commonly called red tides, are caused by some toxic phytoplanktons, and have made massive economic losses as well as marine environmental disturbances. As an effective and environment-friendly strategy to control HAB outbreaks, biological methods using marine bacteria capable of killing the harmful algae or algicidal extracellular compounds from them have been given attention. A new member of the $\gamma$-Proteobacteria, Hahella chejuensis KCTC 2396, was originally isolated from the Korean seashore for its ability to secrete industrially useful polysaccharides, and was characterized to produce a red pigment. This pigment later was identified as an alkaloid compound, prodigiosin. During the past several decades, prodigiosin has been extensively studied for its medical potential as immunosuppressants and antitumor agents, owing to its antibiotic and cytotoxic activities. The lytic activity of this marvelous molecule against Cochlodinium polykrikoides cells at very low concentrations ($\sim$l ppb) was serendipitously detected, making H. chejuensis a strong candidate among the biological agents for HAB control. This review provides a brief overview of algicidal marine bacteria and their products, and describes in detail the algicidal characteristics, biosynthetic process, and genetic regulation of prodigiosin as a model among the compounds active against red-tide organisms from the biochemical and genetic viewpoints.

Characteristics of Algicide Produced by Micrococcus luteus SY-13 Inhibiting Cochlodinium polykrikoides and the Effects on Marine Organisms (적조생물 Cochlodinium polykrikoides를 저해하는 Micrococcus luteus SY-13이 생산하는 살조물질의 특성과 해양생물에 미치는 영향)

  • Kim, Min-Ju;Jeong, Seong-Yun;Cha, Mi-Sun;Lee, Sang-Joon
    • Journal of Environmental Science International
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    • v.17 no.4
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    • pp.439-449
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    • 2008
  • Algicidal bacterium was isolated from sea water during the declining period of Cochlodinium polykrikoides blooms and this bacterium had a significant algicidal activity against C. polykrikoides. In this study, algicidal bacterium was identified on the basis of biochemical and chemotaxonomic characteristics, and analysis of 16S rDNA sequences. The algicidal bacterium showed 98.6% homology with Micrococcus luteus ATCC $381^T$. Therefore, this bacterium was designated Micrococcus luteus SY-13. The optimal culture conditions of the algicidal bacterium was $25^{\circ}C$, initial pH 8.0, and 3.0% NaCl concentration. M. luteus SY-13 is assumed to produce secondary metabolites which have algicidal activity. When 10% culture filtrate of this strain was applied to C. polykrikoides ($1.0\;{\times}\;10^4\;cells/ml$) cultures, over 98% of C, polykrikoides cells were destroyed within 6 hours. The culture filtrate of M. luteus SY-13 exhibited similar algicidal activity after heat-treatment at $121^{\circ}C$ for 15 min. While algicidal activity remained in filtrates with pH adjusted to 8.0, loss of algicidal activity occurred when the pHs of filtrates were adjusted to over 9.0 or heat-treated at $121{\times}180^{\circ}C$ for 1 hour. M. luteus SY-13 showed significant algicidal activities against C. polykrikoides (98.9%) and a wide algicidal range against various harmful algal bloom (HAB) species. However, there was no algicidal effect on diatom and marine livefood organisms except Isocrysis galbana. These results suggest that M. luteus SY-13 could be a candidate for use in the control of HABs.