• Title/Summary/Keyword: Genus identification

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Molecular Identification of Korean Mountain Ginseng Using an Amplification Refractory Mutation System (ARMS)

  • In, Jun-Gyo;Kim, Min-Kyeoung;Lee, Ok-Ran;Kim, Yu-Jin;Lee, Beom-Soo;Kim, Se-Young;Kwon, Woo-Seang;Yang, Deok-Chun
    • Journal of Ginseng Research
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    • v.34 no.1
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    • pp.41-46
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    • 2010
  • Expensive herbs such as ginseng are always a possible target for fraudulent labeling. New mountain ginseng strains have occasionally been found deep within mountain areas and commercially traded at exorbitant prices. However, until now, no scientific basis has existed to distinguish such ginseng from commonly cultivated ginseng species other than by virtue of being found within deep mountain areas. Polymerase chain reaction (PCR) analysis of the internal transcribed spacer has been shown to be an appropriate method for the identification of the most popular species (Panax ginseng) in the Panax ginseng genus. A single nucleotide polymorphism (SNP) has been identified between three newly found mountain ginseng (KGD4, KGD5, and KW1) and already established Panax species. Specific PCR primers were designed from this SNP site within the sequence data and used to detect the mountain ginseng strains via multiplex PCR. The established multiplex-PCR method for the simultaneous detection of newly found mountain ginseng strains, Korean ginseng, and foreign ginseng in a single reaction was determined to be effective. This study is the first report of scientific discrimination of "mountain ginsengs" and describes an effective method of identification for fraud prevention and for uncovering the possible presence of other, cheaper ginseng species on the market.

Re-identification of Colletotrichum acutatum Species Complex in Korea and Their Host Plants

  • Le Dinh Thao;Hyorim Choi;Yunhee Choi;Anbazhagan Mageswari;Daseul Lee;Seung-Beom Hong
    • The Plant Pathology Journal
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    • v.39 no.4
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    • pp.384-396
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    • 2023
  • Colletotrichum acutatum species complex is one of the most important groups in the genus Colletotrichum with a high species diversity and a wide range of host plants. C. acutatum and related species have been collected from different plants and locations in Korea and deposited into the Korean Agricultural Culture Collection (KACC), National Institute of Agricultural Sciences since the 1990s. These fungal isolates were previously identified based mainly on morphological characteristics, and a limitation of molecular data was provided. To confirm the identification of species, 64 C. acutatum species complex isolates in KACC were used in this study for DNA sequence analyses of six loci: nuclear ribosomal internal transcribed spacers (ITS), betatubulin 2 (TUB2), histone-3 (HIS3), glyceraldehyde3-phosphate dehydrogenase (GAPDH), chitin synthase 1 (CHS-1), and actin (ACT). The molecular analysis revealed that they were identified in six different species of C. fioriniae (24 isolates), C. nymphaeae (21 isolates), C. scovillei (12 isolates), C. chrysanthemi (three isolates), C. lupini (two isolates), and C. godetiae (one isolate), and a novel species candidate. We compared the hosts of KACC isolates with "The List of Plant Diseases in Korea", previous reports in Korea and global reports and found that 23 combinations between hosts and pathogens could be newly reported in Korea after pathogenicity tests, and 12 of these have not been recorded in the world.

Molecular Analysis of Pathogenic Molds Isolated from Clinical Specimen (임상검체에서 분리된 병원성 사상균의 분자생물학적 분석)

  • Lee, Jang Ho;Kwon, Kye Chul;Koo, Sun Hoe
    • Korean Journal of Clinical Laboratory Science
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    • v.52 no.3
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    • pp.229-236
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    • 2020
  • Sixty-five molds isolated from clinical specimens were included in this study. All the isolates were molds that could be identified morphologically, strains that are difficult to identify because of morphological similarities, and strains that require species-level identification. PCR and direct sequencing were performed to target the internal transcribed spacer (ITS) region, the D1/D2 region, and the β-tubulin gene. Comparative sequence analysis using the GenBank database was performed using the basic local alignment search tool (BLAST) algorithm. The fungi identified morphologically to the genus level were 67%. Sequencing analysis was performed on 62 genera and species level of the 65 strains. Discrepancies were 14 (21.5%) of the 65 strains between the results of phenotypic and molecular identification. B. dermatitidis, T. marneffei, and G. argillacea were identified for the first time in Korea using the DNA sequencing method. Morphological identification is a very useful method in terms of the reporting time and costs in cases of frequently isolated and rapid growth, such as Aspergillus. When molecular methods are employed, the cost and clinical significance should be considered. On the other hand, the molecular identification of molds can provide fast and accurate results.

Selection and Identification of a Strain KT-10 Producing the Cathepsin B Inhibitor

  • Han, Kil-Hwan;Do, Jae-Ho;Kim, Sang-Dal
    • Journal of Microbiology and Biotechnology
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    • v.7 no.5
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    • pp.333-340
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    • 1997
  • An actinomycetes, KT-10 isolated from ginseng field in Kyongpook, Korea was selected based on its ability to produce a lysosomal cathepsin B inhibitor. The inhibitor purified from the culture supernatant of the isolate KT-10 showed strong inhibitory effects against cathepsin B as well as against papain when the activities were measured using synthetic substrate, ${\alpha}$-N-benzyloxycarbonyl-L-Iysine p-nitrophenyl ester (CLN) or ${\alpha}$-N-benzoyl-D,L-arginine 2-naphthylamide (BANA). The isolate KT-10 was identified as a species of Streptomyces based on its morphological characteristics and chemotaxonomic data. The TAXON program of Ward was used to identify Streptomyces sp. KT-10 as a strain of Streptomyces luteogriseus belong to cluster 18 of the genus Streptomyces with a Willcox probability 0.999388. The cathepsin B inhibitor was presumed to a novel material composed of a polyhydroxylamine.

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Rapid Multiplex PCR Assay for the Simultaneous Detection of the Brucella Genus, B. abortus, B. melitensis, and B. suis

  • Kumar, Sanjay;Tuteja, Urmil;Sarika, Kumari;Singh, Dhirendra Kumar;Kumar, Ashok;Kumar, Om
    • Journal of Microbiology and Biotechnology
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    • v.21 no.1
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    • pp.89-92
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    • 2011
  • The routine identification and differentiation of Brucella species is a time-consuming and labor-intensive process, which frequently places personnel at risk of laboratory-acquired infection. Here, we describe the development of a rapid multiplex PCR assay for the confirmation of presumptive Brucella isolates. The assay was able to identify and differentiate major human pathogens, namely B. abortus, B. melitensis, and B. suis, in a single test of less than an hour and a half.

A Taxonomic Review of the Genus Laccophilus Leach (Coleoptera: Dytiscidae: Laccophilinae) in Korea (한국산 깨알물방개속(딱정벌레목 : 물방개과 : 깨알물방개아과)의 분류학적 재검토)

  • LEE, Dae-Hyun;AHN, Kee-Jeong
    • Korean journal of applied entomology
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    • v.54 no.2
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    • pp.63-71
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    • 2015
  • A taxonomic review of Korean Laccophilus Leach is presented. Five species are recognized, three of which [L. hyalinus (De Geer), L. lewisius Sharp and L. minutus ($Linn{\acute{e}}$)] previously recorded in Korea are incorrect identification of L. vagelineatus Zimmermann, L. lewisioides Brancucci and L. difficilis Sharp, respectively. Habitus and SEM photographs, key and diagnoses of the species are provided.

First Record of Glossogobius olivaceus(Perciformes: Gobiidae) from Korea (한국산 망둑어과(Gobiidae) 어류 1 미기록종, Glossogobius olivaceus)

  • Kwun, Hyuck Joon
    • Korean Journal of Ichthyology
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    • v.32 no.1
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    • pp.32-36
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    • 2020
  • A single specimen of Glossogobius olivaceus was collected from Ulsan, Korea in May 2015, representing the first identification of the species in Korean waters. This species is characterized by several blackish dots on the nape, developed sensory pores and papillae on the head, 33 lateral line scales, and 27 vertebrae. The newly proposed Korean names of the genus and species are "Geom-eun-ban-jeom-mang-duk-sok" and "Geom-eun-ban-jeom-mang-duk", respectively.

A Newly Recorded Sea Cucumber of the Genus Psolus (Holothuroidea: Dendrochirotida: Psolidae) from the East Sea of Korea

  • Lee, Taekjun;Shin, Sook
    • Animal Systematics, Evolution and Diversity
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    • v.33 no.3
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    • pp.195-199
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    • 2017
  • A sea cucumber was collected from Gonghyeonjin in the East Sea of Korea at a depth of 50 m on 22 June 2011 and was identified as Psolus phantapus (Strussenfelt, 1765). This species belongs to the family Psolidae of the order Dendrochirotida based on morphological characteristics and mitochondrial cytochrome c oxidase subunit I sequence analysis. Psolus phantapus, which widely distributes in the Arctic and North Atlantic Oceans, is newly recorded in the Korean fauna. Two Psolus species including the previously reported P. squamatus are recorded in the East Sea of Korea.

A Newly Recorded Basket Star of Genus Gorgonocephalus (Ophiuroidea: Euryalida: Gorgonocephalidae) from Korea

  • Kim, Donghwan;Shin, Sook
    • Korean Journal of Environmental Biology
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    • v.33 no.2
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    • pp.205-208
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    • 2015
  • Some euryalid specimens were collected with fishing nets from Mipo, Gyungsangnamdo and Aewol, Jejudo Island, Korea. They were identified as Gorgonocephalus eucnemis (${M\ddot{u}ller}$ & Troschel, 1842), belonging to family Gorgonocephalidae of order Euryalida, which was new to the Korean fauna. Their molecular analyses were done with newly intended COI primers of mitochondrial cytochrome oxidase I (COI) gene for the accurate molecular identification. The Korean G. eucnemis was coincident with this NCBI species as a result of Blast analysis, which showed the 99% similarity. In the current study, three Gorgonocephalus species have been reported from Korea.

New Record of Arctoseius cetratus (Sellnick, 1940) (Mesostigmata: Ascidae) Phoretic to Sciarid Fly from Mushroom Culture in Korea

  • Keum, Eunsun;Kang, Mingu;Jung, Chuleui
    • Korean Journal of Environmental Biology
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    • v.33 no.2
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    • pp.209-214
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    • 2015
  • The Mesostigmata is an order of Subclass Acari either parasiting to diverse invertebrates or free-living predatory in terrestrial ecosystem. Phoresy is one of the unique behaviors of wingless arthropod dispersal by attaching winged arthropods. We collected mites attached on the dorsal part of abdomen adult sciarid fly, from mushroom culture. The mites were identified as Arctoseius cetratus Sellnick, 1940 in the family of Ascidae. Arctoseius cetratus has short J2, Z1, Z2, and S1, S2 setae, not reaching the bases of following setae. Posterior half of dorsal shield with longitudinal garland of puncta between J and Z setae, peritremes extending anteriorly to midlevel of coxaII. The genus Arctoseius and species Arctoseius cetratus are the first record in Korea. We provided the detail description of the species including the identification key in the family with some ecological notes.