• 농업과학연구
• /
• 제42권4호
• /
• pp.397-406
• /
• 2015

Quantitative traits are mostly controlled by a large number of genes. Some of these genes tend to have a large effect on quantitative traits in cattle and are known as major genes primarily located at quantitative trait loci (QTL). The genetic merit of animals can be estimated by genomic selection, which uses genome-wide SNP panels and statistical methods that capture the effects of large numbers of SNPs simultaneously. In practice, the accuracy of genomic predictions will depend on the size and structure of reference and training population, the effective population size, the density of marker and the genetic architecture of the traits such as number of loci affecting the traits and distribution of their effects. In this review, we focus on the structure of Hanwoo reference and training population in terms of accuracy of genomic prediction and we then discuss of genetic architecture of intramuscular fat(IMF) and marbling score(MS) to estimate genomic breeding value in real small size of reference population.

• 한국지능시스템학회논문지
• /
• 제11권3호
• /
• pp.191-199
• /
• 2001

유전자알고리듬(Genetic Algorithm)은 확률적인 집단 탐색법이고 적응도함수의 형태에 관계없는 직접 탐색법이기 때문에 최근 최적화 방법으로 주목을 받고 있다. 본 논문에서는 Job-shop Schedule Problem에 대하여 교배방법으로 JOX를 사용하며, 효율적인 탐색을 위하여 탐색범위를 축소시키는 강제조작을 형질유전을 고려한 형질유전GT법을 제안하고, 세대교체에 있어 모집단의 다양성을 유지하기 위하여 집단 내에 동일한 개체를 배제하는 방법을 제안한다. 제안 알고리듬을 Fisher & Thompson의 FT10$\times$10 및 FT20$\times$5 문제에 적용하여 유효성을 실험적으로 검증한다.

• 한국육종학회지
• /
• 제42권1호
• /
• pp.11-22
• /
• 2010

The population structure of a domesticated species is influenced by the natural history of the populations of its pre-domesticated ancestors, as well as by the breeding system and complexity of breeding practices implemented by humans. In the genetic and population structure analysis of 122 South Asia collections using 29 simple sequence repeat (SSR) markers, 362 alleles were detected, with an average of 12.5 per locus. The average expected heterozygosity and polymorphism information content (PIC) for each SSR locus were 0.74 and 0.72,respectively. The model-based structure analysis revealed the presence of three clusters with the 91.8% (shared > 75%) membership, with 8.2% showing admixture. The genetic distances of Clusters 1-3 were 0.55, 0.56, and 0.68, respectively. Polymorphic information content followed the same trend (Cluster 3 had the highest value and Cluster 1 had smallest value), with genetic distances for each cluster of 0.52, 0.52, and 0.65, respectively. This result could be used for supporting rice breeding programs in South Asia countries.

• 한국동물학회지
• /
• 제38권2호
• /
• pp.294-298
• /
• 1995

The genetic polymorphism of Protease inhibitor (Pl) in Korean population was investigated by using isoelectric focusing (IEF) in an ultra-narrow pH range,4.2-4.9, and immunoblottins. Three common alleles (Pl * Ml, Pl*2, Pl * M3) were observed and the frequencies for the alleles were Pl * M1=0.7843, Pl * M2=0.1613, Pl * M3=0.0323. In addition to the three common alleles, rare alleles (Pl *5, Pl * Z, Pl* H were detected at low-level frequency. Two unknovlm variants, which were not reported on previous studies in Korean population, were also found.

• Asian-Australasian Journal of Animal Sciences
• /
• 제17권9호
• /
• pp.1197-1203
• /
• 2004

This study deals with the characterization of three populations (two hatchery and one natural) of Indian major carps Catla catla and Labeo rohita from different locations in India. The genetics of Indian major carps has been completely obscure and this is the first report on comparative allozyme variations in natural and hatchery population. The total 10 biochemical genetic markers used to measure interspecific and intraspecific level of diversity. The allele frequency data indicate different level of genetic variability in three populations. The hatchery population exhibited least polymorphism, low level of heterozygosity and genetic diversity.

• 생명과학회지
• /
• 제16권2호
• /
• pp.213-218
• /
• 2006

알로자임 분석을 이용하여 청각의 유전적 다양성과 집단구조를 분석하였다. 이 종은 한국내 생태적, 경제적 중요한 자원이지만 유전적 분석이 수행되지 않았다. 전분 젤 전기영동으로 이 종의 한국내 네 집단에 대해 알로자임 변이와 유전 구조를 조사하였다. 15개 대립유전자좌위에 대해 9개 좌위(60.0%)가 적어도 한 집단에 대해 다형현상을 나타내었다. 종수준에서 유전적 다양성은 매우 높았다($H_{ES}$=0.144). 집단수준에서 유전적 다양성은 비교적 낮았다($H_{EP}$=0.128). 청각에서 전체 유전적 다양도의 87%는 집단내에 내포되어 있었다. 청각의 번식방법은 유성생식보다는 무성생식이 우세하고, 집단의 단절, 낮은 자손의 생성, 지리적 격리, 그리고 정착과정이 낮은 유전적 다양성을 설명하는 요인으로 사료된다. 조사한 청각 집단에서 세대당 이주하는 개체수는 1.69로 평가되었다. 이 값은 보통 수준의 유전자 흐름으로 해류를 통한 이동이 주된 요인으로 보인다.

• 한국작물학회지
• /
• 제50권2호
• /
• pp.91-96
• /
• 2005

Proper choice of source populations contributes to the ultimate success of selection for genetic improvement. The source population should possess the most desirable alleles at as many loci as possible for intra population improvement. Such desirable alleles can be intensified by introgression of exotic germ plasm into locally adapted ones through hybridization followed by selection. The objectives of this study were to determine the mean performance, genetic variability $({\sigma}^2G)$ and heritability of fresh ear yield and other important traits within two sweet corn source populations, $BC1-10{\times}Syn-II$ and BC2-10. One hundred selfed progenies from each of the two source populations were evaluated in a $10\times10$ lattice design, at the Institute of Bioscience (IBS) Farm, University of Putra Malaysia (UPM) following the recommended cultural practices. Significant differences among selfed progenies within $BC1-10{\times}Syn-II$ were observed for all traits, while differences among selfed progenies within BC2-10 were noted for fresh ear yield, ear length, ear diameter, number of kernels per row, ear height, days to tasseling and days to silking. Progenies developed from $BC1-10{\times}Syn-II$ population had higher estimates of ${\sigma}^2G$ than did progenies from BC2-10 population for number of kernel rows per ear, total soluble solids, plant height, days to tasseling and days to silking, showing that selection to improve these traits would be more effective in selfed progenies of $BC1-10{\times}Syn-II$ than that in BC2-10. On the other hand, progenies developed from BC2-10 population had higher estimates of ${\sigma}^2G$ for ear length, ear diameter and ear height, indicating that progenies from this population would have better genetic gain than $BC1-10{\times}Syn-II$. Comparable estimates of genetic variance were found for fresh ear yield, and number of kernels per row, indicating that genetic improvement of the two source populations is expected to produce similar genetic gains for these two traits. Therefore, selfed progenies developed from both source populations could be used to improve the two populations for various traits and thereby develop superior genotypes for immediate use in the production system.

• Genes and Genomics
• /
• 제40권12호
• /
• pp.1319-1329
• /
• 2018

SSRs were successfully isolated from the Perilla crop in our current study, and used to analyze Perilla accessions from East Asia. Analyses of the clear genetic diversity and relationship for Perilla crop still remain insufficient. In this study, 40 new simple sequence repeat (SSR) primer sets were developed from RNA sequences using transcriptome analysis. These new SSR markers were applied to analyze the diversity, relationships, and population structure among 35 accessions of the two cultivated types of Perilla crop and their weedy types. A total of 220 alleles were identified at all loci, with an average of 5.5 alleles per locus and a range between 2 and 10 alleles per locus. The MAF (major allele frequency) per locus varied from 0.229 to 0.943, with an average of 0.466. The average polymorphic information content (PIC) value was 0.603, ranging from 0.102 to 0.837. The genetic diversity (GD) ranged from 0.108 to 0.854, with an average of 0.654. Based on population structure analysis, all accessions were divided into three groups: Group I, Group II and the admixed group. This study demonstrated the utility of new SSR analysis for the study of genetic diversity and population structure among 35 Perilla accessions. The GD of each locus for accessions of cultivated var. frutescens, weedy var. frutescens, cultivated var. crispa, and weedy var. crispa were 0.415, 0.606, 0.308, and 0.480, respectively. Both weedy accessions exhibited higher GD and PIC values than their cultivated types in East Asia. The new SSR primers of Perilla species reported in this study may provide potential genetic markers for population genetics to enhance our understanding of the genetic diversity, genetic relationship and population structure of the cultivated and weedy types of P. frutescens in East Asia. In addition, new Perilla SSR primers developed from RNA-seq can be used in the future for cultivar identification, conservation of Perilla germplasm resources, genome mapping and tagging of important genes/QTLs for Perilla breeding programs.

• 한국가금학회지
• /
• 제23권3호
• /
• pp.135-144
• /
• 1996

This study was carried out to clarify the genetic constitution of biochemical polymorphic loci controlling blood protein and enzymes as genetic rnarkers in Korean native chicken(KNG) population Blood samples were collected from 230 KNG representing three colored-lines(reddish-, yellowish- and blackish- brown) raised in Daejeon branch of National Livestock Research Institute. Eight blood marker loci, transferrin(Tf), post-albumin(Pas), albumin(Alb), amylase-1(Arny-1), es-terase-1(Es-1), alkaline phosphatase(Akp), catalase(Cat) and hemoglobin(Hh) were analyzed by using starch, agarose and polyacrylamide gel electrophoresis. Based on the gene frequencies of polymorphic marker loci, the genetic characteristics of KNF population was analyzed, and the genetic ariability within population was quantified. The genetic relationships between KNC and other native fowls or improved breeds were also estimated. The gene frequencies of Tf, Pas and AIb loci were similar to those of improved breeds among the seven biochemical polymorphic loci, while gene frequencies of Cat and Es-i loci were remarkably different between KNC and improved breeds. Gene frequencies of amy-i and Akp loci were similar to those of New Hampshire and Rhode Island Red and White Leghorn, respectively. However in comparison with other improved breeds, great differences were observed in gene frequencies of these loci The average heterozygosity, effective number of alleles and homogeneity index for the seven loci combined were estimated to be .334, 1.639 and .373, respectively. Based on the dendrogram and genetic distances, the KNC was genetically closer to New Hampshire, Plymouth Rock and Rhode Island Red breeds than to the White Leghorn breed.

• 한국산림과학회지
• /
• 제98권1호
• /
• pp.1-7
• /
• 2009

본 연구에서는 눈측백나무(Thuja koraiensis Nakai) 4개 천연집단을 대상으로 84개체를 선발한 뒤 다형성을 보인 29개의 I-SSR amplicons를 이용하여 유전변이를 조사하였다. 6개의 I-SSR primer로 유전다양성을 추정한 결과 평균 유효대립유전자의 수($A_e$)는 1.44개, 이형접합도의 기대치($H_e$)는 0.258, Shannon의 다양성 지수(S.I.)는 0.385로 크게 높지는 않은 것으로 추정되었다. 이를 다양한 표지자를 이용하여 측백나무과(Cupressaceae)에 속하는 지금까지 연구된 수종들과 비교하여보면 국내의 눈측백나무는 유사하거나 다소 높은 유전변이량을 보유하고 있는 것으로 나타났다. 조사된 4개의 집단을 대상으로 AMOVA를 수행한 결과 전체 유전변이 가운데 13%가 집단간 차이로부터 기인하는 것으로 나타났고, 나머지 87%는 집단내 개체간 차이로부터 기인한 것으로 나타났다. 유전적 거리에 의한 UPGMA 유집분석을 실시한 결과 지리적인 경향은 나타나지 않았다. 유전변이량이 가장 높은 장산집단과 유전적 조성에서 가장 이질적인 방태산집단이 보전 가치가 큰 것으로 판단된다.