• 제목/요약/키워드: Genetic evaluation

검색결과 891건 처리시간 0.027초

Selection of Sahiwal Cattle Bulls on Pedigree and Progeny

  • Bhatti, A.A.;Khan, M.S.;Rehman, Z.;Hyder, A.U.;Hassan, F.
    • Asian-Australasian Journal of Animal Sciences
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    • 제20권1호
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    • pp.12-18
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    • 2007
  • The objective of the study was to compare ranking of Sahiwal bulls selected on the basis of highest lactation milk yield of their dams with their estimated breeding values (EBVs) using an animal model. Data on 23,761 lactation milk yield records of 5,936 cows from five main Livestock Experiment Stations in Punjab province of Pakistan (1964-2004) were used for the study. At present the young A.I bulls are required to be from A-category bull-dams. Dams were categorized as A, B, C and D if they had highest lactation milk yield of ${\geq}$2,700, 2,250-2,699, 1,800-2,249 and <1,800 litres, respectively. The EBVs for lactation milk yield were estimated for all the animals using an individual animal model having fixed effect of herd-year and season of calving and random effect of animal. Fixed effect of parity and random effect of permanent environment were incorporated when multiple lactation were used. There were 396 young bulls used for semen collection and A.I during 1973-2004. However, progeny with lactation yields recorded, were available only for 91 bulls and dams could be traced for only 63 bulls. Overall lactation milk yield averaged 1,440.8 kg. Milk yield was 10% heritable with repeatability of 39%. Ranking bulls on highest lactation milk yield of their dams, the in-vogue criteria of selecting bulls, had a rank correlation of 0.167 (p<0.190) with ranking based on EBVs from animal model analysis. Bulls' EBVs for all lactations had rank correlation of 0.716 (p<0.001) with EBVs based on first lactation milk yield and 0.766 (p<0.001) with average EBVs of dam and sire (pedigree index). Ranking of bulls on highest lactation yield of their dams has no association with their ranking based on animal model evaluation. Young Sahiwal bulls should be selected on the basis of pedigree index instead of highest lactation yield of dams. This can help improve the genetic potential of the breed accruing to conservation and development efforts.

Evaluation of Effects of Metformin in Primary Ovarian Cancer Cells

  • Patel, Seema;Singh, Neeta;Kumar, Lalit
    • Asian Pacific Journal of Cancer Prevention
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    • 제16권16호
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    • pp.6973-6979
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    • 2015
  • Background: Ovarian cancer is the third most common cause of cancer in Indian women. Despite an initial 70-80% response rate, most patients relapse within 1-2 years and develop chemoresistance. Hence, identification or repositioning of drugs to resensitise ovarian cancer cells to existing chemotherapy is needed. Traditionally immortalized cell lines have been used in research, but these may contain genetic aberrations and chromosomal abnormalities serving as poor indicators of normal cell phenotype and progression of early-stage disease. The use of primary cells, maintained for only short periods of time in vitro, may serve as the best representative for studying in vivo conditions of the tissues from which they are derived. In this study we have attempted to evaluate the effect of metformin (an antidiabetic drug) in primary ovarian cancer cells because of its promising effect in other solid tumours. Materials and Methods: Primary cultures of epithelial ovarian cancer cells established from ascitic fluid of untreated ovarian cancer patients were used. The cells were treated with metformin at doses standardized by MTT assay and its ability to induce apoptosis was studied. The cells were analysed for apoptosis and apoptosis related proteins by flow cytometry and western blotting respectively. Results: Metformin induced apoptosis in ovarian cancer cells, provoking cell cycle arrest in the G0/G1 and S phase. It induced apoptosis in ovarian cancer cells by, down-regulating Bcl-2 and up-regulating Bax expression. Conclusions: Metformin was able to induce apoptosis in primary ovarian cancer cells by modulating the expression of Bcl-2 family proteins. These data are relevant to ongoing translational research efforts exploring the chemotherapeutic potential of metformin.

TANK 모형 매개변수 추정을 위한 회귀식 개발 (Regression Equations for Estimating the TANK Model Parameters)

  • 안지현;송정헌;강문성;송인홍;전상민;박지훈
    • 한국농공학회논문집
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    • 제57권4호
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    • pp.121-133
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    • 2015
  • The TANK model has been widely used in rainfall-runoff modeling due to its simplicity of concept and computation while achieving forecast accuracy. A major barrier to the model application is to determine parameter values for ungauged watersheds, leading to the need of a method for the parameter estimation. The objective of this study was to develop regression equations for estimating the 3th TANK model parameters considering their variations for the ungauged watersheds. Thirty watersheds of dam sites and stream stations were selected for this study. A genetic algorithm was used to optimize TANK model parameters. Watershed characteristics used in this study include land use percent, watershed area, watershed length, and watershed average slope. Generalized equations were derived by correlating to the optimized parameters and the watershed characteristics. The results showed that the TANK model, with the parameters determined by the developed regression equations, performed reasonably with 0.60 to 0.85 of Nash-Sutcliffe efficiency for daily runoff. The developed regression equations for the TANK model can be applied for the runoff simulation particularly for the ungauged watersheds, which is common for upstream of agricultural reservoirs in Korea.

Electrophysiological characteristics of R47W and A298T mutations in CLC-1 of myotonia congenita patients and evaluation of clinical features

  • Chin, Hyung Jin;Kim, Chan Hyeong;Ha, Kotdaji;Shin, Jin Hong;Kim, Dae-Seong;So, Insuk
    • The Korean Journal of Physiology and Pharmacology
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    • 제21권4호
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    • pp.439-447
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    • 2017
  • Myotonia congenita (MC) is a genetic disease that displays impaired relaxation of skeletal muscle and muscle hypertrophy. This disease is mainly caused by mutations of CLCN1 that encodes human skeletal muscle chloride channel (CLC-1). CLC-1 is a voltage gated chloride channel that activates upon depolarizing potentials and play a major role in stabilization of resting membrane potentials in skeletal muscle. In this study, we report 4 unrelated Korean patients diagnosed with myotonia congenita and their clinical features. Sequence analysis of all coding regions of the patients was performed and mutation, R47W and A298T, was commonly identified. The patients commonly displayed transient muscle weakness and only one patient was diagnosed with autosomal dominant type of myotonia congenita. To investigate the pathological role of the mutation, electrophysiological analysis was also performed in HEK 293 cells transiently expressing homo-or heterodimeric mutant channels. The mutant channels displayed reduced chloride current density and altered channel gating. However, the effect of A298T on channel gating was reduced with the presence of R47W in the same allele. This analysis suggests that impaired CLC-1 channel function can cause myotonia congenita and that R47W has a protective effect on A298T in relation to channel gating. Our results provide clinical features of Korean myotonia congenita patients who have the heterozygous mutation and reveal underlying pathophyological consequences of the mutants by taking electrophysiological approach.

Evaluation of the Frequency of the IL-28 Polymorphism (rs8099917) in Patients with Chronic Hepatitis C Using Zip Nucleic Acid Probes, Kerman, Southeast of Iran

  • Iranmanesh, Zahra;Mollaie, Hamid Reza;Arabzadeh, Seyed Alimohammad;Zahedi, Mohammad Javad;Fazlalipour, Mehdi;Ebrahimi, Saeede
    • Asian Pacific Journal of Cancer Prevention
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    • 제16권5호
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    • pp.1919-1924
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    • 2015
  • Polymorphisms in the region of the interleukin IL-28 gene on chromosome 19 have been related with clearance of hepatitis C virus (HCV), a major human pathogen responsible for chronic hepatitis, cirrhosis and hepatocellular carcinoma. About 3% of the world's population is infected with HCV. The long-term response to therapy is influenced by many host and viral factors, and recent evidence has indicated that some host genetic polymorphisms related to IL-28 are the most powerful predictors of virological response in patients with HCV. This study assessed frequency of the IL-28 polymorphism (rs8099917) in 50 patients (39 men and 11 women) with chronic hepatitis C using ZNA probe real time PCR new method. All patients were tested for genotype of HCV and the HCV viral load. In parallel, the levels of SGOT, SGPT and ALK enzymes were assessed. Treatment using Peg-interferon alpha with ribavirin was conducted for patients and subsequently samples were collected to detect any change in viral load or liver enzyme rates. The overall frequency of the TT allele is 74%, TG allele 20% and GG allele 6% and the percent of patients who had T allele was 84%. Clear reduction in viral load and liver enzymes was reported in patients with the T allele. Especially for genotype 1 which is relatively resistant to treatment, these alleles may have a role in this decline. In conclusion, we showed that IL-28 polymorphism rs8099917 strongly predicts virological response in HCV infection and that real-time PCR with Zip nucleic acid probes is a sensitive, specific and rapid detection method for detection of SNPs which will be essential for monitoring patients undergoing antiviral therapy.

Oculodentodigital syndrome의 1 증례 (OCULODENTODIGITAL SYNDROME : A CASE REPORT)

  • 강호승;정태성;김신
    • 대한소아치과학회지
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    • 제26권3호
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    • pp.492-498
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    • 1999
  • Oculodentodigital syndrome은 Lohmann에 의해 최초로 보고된 후, 눈과 코, 치아와 골격의 이상을 포함하는 'dysplasia oculo-dento-digitalis'라는 용어로 1957년 Meyer-Schwickerath 등에 의해 명명된 다소 희귀한 유전성 질환이다. 이 질환은 대부분 상염색체 우성이며, 많은 증례에서 다양한 변이를 보인다. 임상적인 양상으로서, (1) 독특한 안모형태, (2) 소안구증, (3) 합지증과 수지절의 굴절, (4) 법랑질 형성부전, (5) 가늘고 광택없는 모발 등으로 특징지을 수 있다. 본 증례는 지능은 정상이나 행동조절이 어려우며 교합면의 과도한 마모, 치아우식을 주소로 부산대학교병원 소아치과에 의뢰된 환자로 합지증에 대한 수술기왕력을 가지고 있었으며, 상기의 임상적 특징을 모두 보이고 있다. 이에 치과적 치료로써 법랑질 형성부전치아에 대한 수복치료와 초진시부터 전 치아에 걸쳐 주기적인 불소도포를 실시하였고, 차후 전치부의 심미수복을 계획하고 있다.

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핵돈군간 산육형질의 통합자료를 이용한 요크셔 종돈의 선발비율 변화 (Changes rate in selection of Yorkshire pig for productive traits using the integrated test records among GGPs)

  • 조광현;김성훈;박경도
    • Journal of the Korean Data and Information Science Society
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    • 제27권2호
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    • pp.429-435
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    • 2016
  • 일당증체량 (kg), 등지방두께 (mm), 90kg도달일령 (일), 등심깊이 (mm)와 정육율 (%)에 대한 유전력은 각각 0.40, 0.44, 0.40, 0.25와 0.48로 추정되었다. 모형 1과 모형 2에서 산육형질에 대한 육종가 및 순위간의 상관계수는 각각 0.995~1.000과 0.991~1.000의 범위에서 추정되었으며, 고도의 유의적인 수준 (p<0.0001)을 나타냄으로서 농장별로 추정된 육종가와 거의 일치하였다. 산육형질별 top 5%와 top 10%의 선발두수에 대한 농장별 상대적 선발비율은 그 동안 폐쇄축군을 유지하면서 각 농장들이 추구하는 개량형질에 따라서 현저히 다르게 나타났으며, 농장간 통합검정자료를 이용한 국가단위 유전능력평가 체계를 구축하여 우수 종돈을 선발하는 것이 더욱 바람직하다고 판단되었다.

Arterial Tortuosity Syndrome in a Neonate

  • Kim, Kyung Min;Hur, Sun-Mi;Yoon, Ji Hong;Lee, Eun-Jung;Lee, Jae Young
    • Neonatal Medicine
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    • 제25권1호
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    • pp.49-52
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    • 2018
  • Arterial tortuosity syndrome (ATS) is a very rare autosomal recessive connective tissue disease characterized by generalized elongation and tortuosity of the medium- to large-sized arteries, and other systemic connective tissue manifestations. To date, this disease entity has not been reported in Korea. We report a case of ATS diagnosed in a neonate who presented with severe elongation and tortuosity of the aorta and its major branches, as well as the intracranial arteries. Additionally, the patient presented with a tortuous dilatation of the inferior vena cava, an aneurysmal dilatation of the extra-hepatic bile ducts, and an inguinal and sliding hiatal hernia. The diagnosis was confirmed using DNA sequencing analysis, and the patient demonstrated a compound heterozygosity for two novel mutations (c.738delG [p.Gln247Serfs*33] and c.362T>C [p.Ile121Thr]) in exon 2 of the SLC2A10 gene. Genetic analysis also confirmed that both parents were heterozygous carriers of the responsible mutations. Owing to such clinical manifestations, ATS is often misdiagnosed as other connective tissue diseases including Loeys-Dietz syndrome, Marfan syndrome, and Ehlers-Danlos syndrome. In patients presenting with a high index of suspicion, thorough clinical evaluation and screening for ATS including computed tomography or magnetic resonance angiography and target gene analysis are necessary for early diagnosis and management.

A Critical Evaluation of DNA Adducts as Biological Markers for Human Exposure to Polycyclic Aromatic Compounds

  • Godschalk, Roger W.L.;Van Schooten, Frederik-Jan;Bartsch, Helmut
    • BMB Reports
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    • 제36권1호
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    • pp.1-11
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    • 2003
  • The causative role of polycyclic aromatic hydrocarbons (PAH) in human carcinogenesis is undisputed. Measurements of PAH-DNA adduct levels in easily accessible white blood cells therefore represent useful early endpoints in exposure intervention of chemoprevention studies. The successful applicability of DNA adducts as early endpoints depends on several criteria:i.adduct levels in easily accessible surrogate tissues should reflect adduct levels in target-tissues, ii. toxicokinetics and the temporal relevance should be properly defined.iii. sources of inter- and intra-individual variability must be known and controllable, and finally iv. adduct analyses must have advantages as compared to other markers of PAH-exposure. In general, higher DNA adduct levels or a higher proportion of subjects with detectable DNA adduct levels were found in exposed individuals as compared with non-exposed subjects, but saturation may occur at high exposures. Furthermore, DNA adduct levels varied according to changes in exposure, for example smoking cessation resulted in lower DNA adduct levels and adduct levels paralleled seasonal variations of air-pollution. Intra-individual variation during continuous exposure was low over a short period of time (weeks), but varied significantly when longer time periods (months) were investigated. Inter-individual variation is currently only partly explained by genetic polymorphisms in genes involved in PAH-metabolism and deserves further investigation. DNA adduct measurement may have three advantages over traditional exposure assessment: i. they can smooth the extreme variability in exposure which is typical for environmental toxicants and may integrate exposure over a longer period of time. Therefore, DNA adduct assessment may reduce the monitoring effort. ii. Biological monitoring of DNA adducts accounts for all exposure routes. iii. DNA adducts may account for inter-individual differences in uptake, elimination, distribution, metabolism and repair amongst exposed individuals. In conclusion, there is now a sufficiently large scientific basis to justify the application of DNA adduct measurement as biomarkers in exposure assessment and intervention studies. Their use in risk-assessment, however, requires further investigation.

뇌간 청각유발전위 검사에 의해 진단된 보더 콜리의 양측 후발성 감각신경성난청 (Bilateral Later-Onset Sensorineural Deafness Diagnosed by Brainstem Auditory Evoked Response in a Border Collie)

  • 강병재;김용선;이승훈;김완희;권오경
    • 한국임상수의학회지
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    • 제31권2호
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    • pp.129-132
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    • 2014
  • 4년령의 암컷 보더 콜리가 청각장애 평가를 위해 내원하였다. 청력 소실의 원인을 확인하기 위해 임상 검사, 신경계 검사, 검이경, 자기 공명 검사법이 실시되었지만, 특별한 이상을 확인할 수 없었다. 청력 소실을 평가하기 위해 뇌간 청각유발전위 검사가 실시되었고, 양측성 감각신경성난청을 확인하였다. 여러 검사와 병력 확인을 통해 후천적 청력 소실의 가능한 원인들을 배제하여 유전성의 양측 후발성 감각신경성난청으로 잠정 진단하였다. 이 보고는 개에서도 사람에서 보고된 유전성의 후발성 감각신경성난청이 있을 수 있다는 것을 제안한다.