• Proceedings of the Zoological Society Korea Conference
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• 2001.04a
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• pp.49-49
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• 2001

No Abstract, See Full Text

• Journal of Microbiology and Biotechnology
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• v.8 no.5
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• pp.490-496
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• 1998

Random amplified polymorphic DNA (RAPD) markers were used to survey genetic variability among 34 Botrytis cinerea isolates from nine different host plants in Korea. For RAPD analysis, 115 arbitrary decamer primers were initially screened for polymorphic major DNA bands with 11 representative B. cinerea isolates. Eleven primers that initially detected polymorphisms were tested a second time with additional 23 isolates of B. cinerea as well as one isolate of Botrytis squamosa as an outgroup. The RAPD analyses revealed that all isolates except one showed different molecular phenotypes. Dendrograms obtained from dissimilarity matrices using the unweighted paired group method of arithmetic means (UPGMA) showed the 36.4% to 90.0% similarity among all B. cinerea isolates. The B. squamosa isolate showed the least similarity to all B. cinerea isolates. The cluster analyses indicated no correlation among all the characteristics examined including molecular phenotypes, host and geographic origins, year of isolation, or pathogenicity. The RAPD data suggest that a high level of genetic variation exists among Korean populations of B. cinerea and it seems to be caused by heterokaryosis among preexisting molecular phenotypes.

• 제어로봇시스템학회:학술대회논문집
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• 2003.10a
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• pp.1986-1989
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• 2003

This paper proposes the information retrieval improvement for the Web using the structure and hyperlinks of HTML documents along with user profile. The method bases on the rationale that terms appearing in different structure of documents may have different significance in identifying the documents. The method partitions the occurrence of terms in a document collection into six classes according to the tags in which particular terms occurred (such as Title, H1-H6 and Anchor). We use genetic algorithm to determine class importance values and expand user query. We also use this value in similarity computation and update user profile. Then a genetic algorithm is used again to select some terms from user profile to expand the original query. Lastly, the search engine uses the expanded query for searching and the results of the search engine are scored by similarity values between each result and the user profile. Vector space model is used and the weighting schemes of traditional information retrieval were extended to include class importance values. The tested results show that precision is up to 81.5%.

• Nuclear Engineering and Technology
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• v.31 no.3
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• pp.287-293
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• 1999

To assess the effects of gamma-ray (Co-60) on radiation sensitivity and genetic similarity of the basidiospore and mycelium in oyster mushroom, Pleurotus ostreatus, the D$_{10}$ values and RAPD patterns were analysed. Three strains were isolated from basidiospores (PO-Bl, -B2, and - B3 from 2 kGy irradiation group) and five strains from mycelia (PO-Ml, -M2 from 1 key, PO-M3 from 2 kGy, and PO-M4 and -M5 from 2+1 key irradiation group). The D$_{10}$ values of basidiospore and mycelium of P. Preurotus ostreatus were 1,250 Gy and 500 Gy, respectively. The growth rates of the eight strains on the five media were various and the activities of extracellular chitinases of them were generally higher than those of the control. By the gamma-ray radiation, 22-25% of genetic similarities were changed in the basidiospore strains and 23-36% of them in the mycelium strains. From these results, it seems that the basidiospore could be more radio-resistant than the mycelium of P. ostreatus and that the genetic similarity of the mycelium of P ostrentus could be changed easier than that of the basidiospore by the gamma-ray radiation.ion.

• KOREAN JOURNAL OF CROP SCIENCE
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• v.46 no.2
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• pp.157-163
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• 2001

Introgression from genetically modified plants (GMPs) may be dependent on the genetic similarity to wild relative plants. In Korea, many wild plant species are botanically related to the cultivated plants that have a potential to be genetically transformed. The controversy for hazards of GMPs is continuing because the studies on gene flow or introgression are little. Based on the systematic criteria, we have surveyed Korean wild plant species that showed the similarity to cultivating crops. The consideration for feasibility of genetic pollution (introgression of transgene) is necessary for the successful accomplishment in the practical use of GMPs. Although the detrimental effects of GMPs on wild relatives have not been clearly verified, Korean wild plant species related to crop plant (potential GMP) have to be investigated with respect to the introgression. Korean flora consists of ca. 5,500 species. Among them, 1,448 species are classified as weed species (966 native, 325 naturalized, and 167 escaped ones), which is vulnerable to GMPs in term of introgression. We suggested the principal Korean wild plants related to major crops that might be affected by GMPs via introgression. The investigated species herein are selected based on the morphological and phenological relationship. It is necessary to verify the genetic relationship between cultivated plants and wild relatives sing more precise molecular techniques, which provide the information of likelihood for the introgression of transgene.

• Journal of Life Science
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• v.11 no.2
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• pp.133-137
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• 2001

The molecular taxonomic relationship of nine species in the genus Moniliella Stolk & Dakin and Trichosporonoides Haskins & Spencer and six species of other yea나-like fungi was examined by sequencing analysis of large subunit rDNA D1/D2 variable domain. The fifteeen species fell into two major groups corresponding with their genetic relationships. The nine species of the genus Moniliella and Trichosporonoides were placed at the same cluster. similarity values based on the D1/D2 domain sequences were 45.4-100% among species of genus Moniliella, 45.2-84.4% among genus Trichosporonoides species, and 45.6-90.1% among species of genus Moniliella and Trichosporonoides. Identical sequence similarity was observed between M. suaveolens var. nigra and M. suaveolens. A colse relationship of M. mellis. and M. acetoabutens is observed. The result of this study provided and insight into the genetic origins of genus Moniliella and Trichosporonoides species as well as their genetic relationships. Genus Moniliella and Trichosporonoides are closely related to each other based on sequence analysis of the large subunit rDNA D1/D2 region and we suggest combination of the genus Moniliella and Trichosporonoides to single genus.

• Proceedings of the Korean Operations and Management Science Society Conference
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• 2003.11a
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• pp.259-262
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• 2003

Group technology(GT) is a manufacturing philosophy which identifies and exploits the similarity of parts and processes in design and manufacturing. A specific application of GT is cellular manufacturing. the first step in the preliminary stage of cellular manufacturing system design is cell formation, generally known as a machine-part cell formation(MPCF). This paper presents and tests a grouping gentic algorithm(GGA) for solving the MPCF problem and uses the measurements of e(ficacy. GGA's replacement heuristic used similarity coefficients is presented.

• FLOWER RESEARCH JOURNAL
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• v.18 no.3
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• pp.201-206
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• 2010

The genetic relationship among 48 Cymbidium cultivars was analyzed using randomly amplified polymorphic DNA (RAPD) with eighty 10 mers random primers (Operon Technologies) and twelve 20 mers random primers. Forty eight Cymbidium cultivars included 34 oriental Cymbidium, 7 hybrids, and 7 western Cymbidium. 407 (9.9 per primer) and 56 polymorphic bands (9.5 per primer) were generated by polymerase chain reaction with selected thirty 10 mers primers, and nine 20 mers primers, respectively. The polymorphic fragments ranged from 0.4 to 1.5 kb in size. The dendrogram was constructed by using the UPGMA clustering algorithm based on genetic similarity. Forty eight Cymbidium cultivars were classified into four major groups at similarity coefficient value of 0.638.

• Proceedings of the Korean Society of Fisheries Technology Conference
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• 2003.05a
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• pp.229-230
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• 2003

Shortnecked clam is a commercially important mollusks species, which is distributed all over the Yellow Sea. Consequent of the rapid increase in seed production, there is a need to understand the genetic composition of wild shortnecked clam populations in order to evaluate exactly the latent genetic effects induced by seed production operations. Many genetic and molecular researches were made because RAPD-PCR is a simple and rapid method for determining genetic diversity and similarity in various organisms with the advantage that no prior knowledge of the genome under research is needed (Fischer et at., 2000). (omitted)

• Korean Journal of Plant Resources
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• v.20 no.1
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• pp.79-85
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• 2007

The species in genus Saxifiraga distributed in circumpolar arctic are taxonomically difficult to study. RAPD analyses were performed to compare the genetic diversity of the 16 Saxifrages originated from the Norwegian Arctic Svalbard and Korea. The 12 accessions of URP primers were tested and 4 of which showed polymorphism were selected. Total 79 (44.8%) DNA bands were scored and analyzed by UPGMA cluster analysis. The results indicated that all of the 9 Saxifraga species from Svalbard showed high genetic diversity than those from Korea. The Similarity matrix and cluster analyses indicated that the Saxifraga species from Svalbard and Korea can be divided into two different subgroups. RAPDs of the Saxifraga species of Korea showed higher homologous patterns than those of Arctic Saxifrage. Among the Saxifraga species, we found that the morphological similarity reflects the genetic similarity. The geographic distance, clonal reproduction, and environmental condition may contribute the high level of genetic diversity between Saxifraga species from the two isolated regions.