• Title/Summary/Keyword: Generation Interval

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QTL analysis of for micronutrient content in rice grain

  • Lee, Hyun-Sook;Shim, Kyu-Chan;Jeon, Yun-A;Ahn, Sang-Nag
    • Proceedings of the Korean Society of Crop Science Conference
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    • 2017.06a
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    • pp.144-144
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    • 2017
  • Micronutrients such as zinc (Zn), iron (Fe), manganese (Mn) have important roles for development and growth in plants but it also have roles in animals and humans. In previous studies, a Korean weedy rice, KH2J was selected to have tolerance to heavy metal, lead (Pb) compared with a cultivar, Milyang23. To identify QTLs for micronutrients concentration in grain, an F2 population (120 plants) were developed from a cross between KH2J and an indica rice cultivar, Milyang23. To measure the concentration of eight ions, Zn, Fe, Mn, Pb, calcium (Ca), copper (Cu), cadmium (Cd) and arsenic (As), grains were collected and digested with 65% nitric acid, and the ion contents were measured using inductively coupled plasma mass spectrometry. A total 27 putative quantitative trait loci (QTLs) were detected on 12 chromosomes by single point analysis and 22 putative QTLs were detected by composite interval mapping. The co-locations of QTL for Zn, Fe and Mn were observed on chromosome 5. The QTLs for Cd, Cu and Zn were co-localized on chromosome 10, and QTLs for Zn, As and Mn was on chromosome 12. The Zn concentration in F2 generation showed significant correlation with concentrations of As (r = -0.4), Cu (r = 0.5) and Fe (r = 0.2) (P < 0.01). Also, the Ca concentration was significantly related with Mn and Fe concentrations (P < 0.01). Fine mapping of these QTLs is underway to analyze their functional relationship.

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Petrology of the Igneous Rocks in the Goseong Area, Gyeongsang Basin I. Major Element Geochemistry and K-Ar Radiometric Age (경상분지 고성지역의 화성암류에 대한 암석학적 연구 I. 주성분원소 지구화학과 K-Ar 방사성 연대)

  • Jwa, Yong-Joo;Park, Jeong-mi
    • Economic and Environmental Geology
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    • v.29 no.5
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    • pp.561-573
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    • 1996
  • The igneous rocks in the Goseong area, the southwestern part of the Gyeongsang basin, are composed of the volcanic rocks, Bulgugsa granites and intrusive andesites. The volcanic rocks are andesitic lapilli tuff, dacite and rhyolite. The granites are mainly of hornblende-biotite granite and intruded into the sedimentary basement and the volcanic rocks. The intrusion of andesitic dyke is thought to be the latest igneous activity in the area. In the variation diagrams of the major oxides, the three igneous rock types show different variational trends, indicating that they were from the different magmatic pulses. K-Ar radiometric ages suggest that the igneous activity in the Goseong area had occurred during late Cretaceous period. The ages of the volcanic rocks seem likely to have become younger due to the thermal effect by the granitic intrusion. The major element compositoinal variation of the granites from the Goseong area are compared with those from the Jindong, Geoje and Masan areas. By the comparison, it is easily understood that the Jindong granites are fairly different from the other three granites. On the other hand, the Goseong, Geoje and Masan granites generally show similar variational trends with each other, suggesting that they are of similar genetic origin. Combining the similarity of the geochemical features and the difference of the intruding ages between the Goseong and Masan granites, it seems like that the magma generation from the same source materials had occurred at a temporal interval.

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Anomalous Event Detection in Traffic Video Based on Sequential Temporal Patterns of Spatial Interval Events

  • Ashok Kumar, P.M.;Vaidehi, V.
    • KSII Transactions on Internet and Information Systems (TIIS)
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    • v.9 no.1
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    • pp.169-189
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    • 2015
  • Detection of anomalous events from video streams is a challenging problem in many video surveillance applications. One such application that has received significant attention from the computer vision community is traffic video surveillance. In this paper, a Lossy Count based Sequential Temporal Pattern mining approach (LC-STP) is proposed for detecting spatio-temporal abnormal events (such as a traffic violation at junction) from sequences of video streams. The proposed approach relies mainly on spatial abstractions of each object, mining frequent temporal patterns in a sequence of video frames to form a regular temporal pattern. In order to detect each object in every frame, the input video is first pre-processed by applying Gaussian Mixture Models. After the detection of foreground objects, the tracking is carried out using block motion estimation by the three-step search method. The primitive events of the object are represented by assigning spatial and temporal symbols corresponding to their location and time information. These primitive events are analyzed to form a temporal pattern in a sequence of video frames, representing temporal relation between various object's primitive events. This is repeated for each window of sequences, and the support for temporal sequence is obtained based on LC-STP to discover regular patterns of normal events. Events deviating from these patterns are identified as anomalies. Unlike the traditional frequent item set mining methods, the proposed method generates maximal frequent patterns without candidate generation. Furthermore, experimental results show that the proposed method performs well and can detect video anomalies in real traffic video data.

On-board Realtime Orbit Parameter Generator for Geostationary Satellite (정지궤도위성 탑재용 실시간 궤도요소 생성기)

  • Park, Bong-Kyu;Yang, Koon-Ho
    • Aerospace Engineering and Technology
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    • v.8 no.2
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    • pp.61-67
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    • 2009
  • This paper proposes an on-board orbit data generation algorithm for geostationary satellites. The concept of the proposed algorithm is as follows. From the ground, the position and velocity deviations with respect to the assumed reference orbit are computed for 48 hours of time duration in 30 minutes interval, and the generated data are up-loaded to the satellite to be stored. From the table, three nearest data sets are selected to compute position and velocity deviation for asked epoch time by applying $2^{nd}$ order polynomial interpolation. The computed position and velocity deviation data are added to reference orbit to recover absolute orbit information. Here, the reference orbit is selected to be ideal geostationary orbit with a zero inclination and zero eccentricity. Thanks to very low computational burden, this algorithm allows us to generate orbit data at 1Hz or even higher. In order to support 48 hours autonomy, maximum 3K byte memory is required as orbit data storage. It is estimated that this additional memory requirement is acceptable for geostationary satellite application.

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Association of the Single Nucleotide Polymorphisms in RUNX1, DYRK1A, and KCNJ15 with Blood Related Traits in Pigs

  • Lee, Jae-Bong;Yoo, Chae-Kyoung;Park, Hee-Bok;Cho, In-Cheol;Lim, Hyun-Tae
    • Asian-Australasian Journal of Animal Sciences
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    • v.29 no.12
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    • pp.1675-1681
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    • 2016
  • The aim of this study was to detect positional candidate genes located within the support interval (SI) regions based on the results of red blood cell, mean corpuscular volume (MCV), and mean corpuscular hemoglobin quantitative trait locus (QTL) in Sus scrofa chromosome 13, and to verify the correlation between specific single-nucleotide polymorphisms (SNPs) located in the exonic region of the positional candidate gene and the three genetic traits. The flanking markers of the three QTL SI regions are SW38 and S0215. Within the QTL SI regions, 44 genes were located, and runt-related transcription factor 1, dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1A (DYRK1A), and potassium inwardly-rectifying channel, subfamily J, member 15 KCNJ15-which are reported to be related to the hematological traits and clinical features of Down syndrome-were selected as positional candidate genes. The ten SNPs located in the exonic region of the three genes were detected by next generation sequencing. A total of 1,232 pigs of an $F_2$ resource population between Landrace and Korean native pigs were genotyped. To investigate the effects of the three genes on each genotype, a mixed-effect model which is the considering family structure model was used to evaluate the associations between the SNPs and three genetic traits in the $F_2$ intercross population. Among them, the MCV level was highly significant (nominal $p=9.8{\times}10^{-9}$) in association with the DYRK1A-SNP1 (c.2989 G$F_2$ intercross, our approach has limited power to distinguish one particular positional candidate gene from a QTL region.

Numerical Analysis of Three Dimensional Supersonic Flow around Cavities

  • Woo Chel-Hun;Kim Jae-Soo;Kim Jong-Rok
    • 한국전산유체공학회:학술대회논문집
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    • 2006.05a
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    • pp.311-314
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    • 2006
  • The supersonic flow around tandem cavities was investigated by three- dimensional numerical simulations using the Reynolds-Averaged Navier-Stokes(RANS) equation with the $\kappa-\omega$ thrbulence model. The flow around a cavity is characterized as unsteady flow because of the formation and dissipation of vortices due to the interaction between the freestream shear layer and cavity internal flow, the generation of shock and expansion waves, and the acoustic effect transmitted from wake flow to upstream. The upwind TVD scheme based on the flux vector split using van Leer's limiter was used as the numerical method. Numerical calculations were performed by the parallel processing with time discretizations carried out by the 4th-order Runge-Kutta method. The aspect ratio of cavities are 3 for the first cavity and 1 for the second cavity. The ratio of cavity interval to depth is 1. The ratio of cavity width to depth is 1 in the case of three dimensional flow. The Mach number and the Reynolds number were 1.5 and $4.5{\times}10^5$, respectively. The characteristics of the dominant frequency between two-dimensional and three-dimensional flows were compared, and the characteristics of the second cavity flow due to the fire cavity flow cavity flow was analyzed. Both two dimensional and three dimensional flow oscillations were in the 'shear layer mode', which is based on the feedback mechanism of Rossiter's formula. However, three dimensional flow was much less turbulent than two dimensional flow, depending on whether it could inflow and outflow laterally. The dominant frequencies of the two dimensional flow and three dimensional flows coincided with Rossiter's 2nd mode frequency. The another dominant frequency of the three dimensional flow corresponded to Rossiter's 1st mode frequency.

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Accuracy Assessment of the Upward Continuation using the Gravity Model from Ultra-high Degree Spherical Harmonics (초 고차항 구 조화 중력모델링에 의한 상향 연속의 정확도 검증)

  • Kwon Jay-Hyoun;Lee Jong-Ki
    • Journal of the Korean Society of Surveying, Geodesy, Photogrammetry and Cartography
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    • v.24 no.2
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    • pp.183-191
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    • 2006
  • The accuracy of the upward continuation is assessed through the gravity modeling using an ultra-high degree spherical harmonic expansion. The difficulties in the numerical calculation of Legendre function with ultra-high degree, underflow and/or overflow, is successfully resolved in 128 bit calculation scheme. Using the generated Legendre function, the gravity anomaly with spatial resolution of $1'{\times}1'$ on the geoid is calculated. The generated gravity anomaly is degraded and extracted with various noise levels and data intervals, then upward continuation is applied to each data sets. The comparison between the upward continued gravity disturbances and the directly calculated from the spherical harmonics showed that the accuracy on the direct method was significantly better than that of Poisson method. In addition, it is verified that the denser and less noised gravity data on the geoid generates better gravity disturbance vectors at an altitude. Especially, it is found that the gravity noise level less than 5mGal, and the data interval less than 2arcmin is necessary for next generation precision INS navigation which requires the accuracy of 5mGal or better at an altitude.

Identification of QTLs controlling somatic embryogenesis using RI population of cultivar ${\times}$ weedy soybean

  • Choi, Pilson;Mano, Yoshiro;Ishikawa, Atsuko;Odashima, Masashi;Umezawa, Taishi;Fujimura, Tatsuhito;Takahata, Yoshihito;Komatsuda, Takao
    • Plant Biotechnology Reports
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    • v.4 no.1
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    • pp.23-27
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    • 2010
  • Quantitative trait loci (QTLs) controlling ability of somatic embryogenesis were identified in soybean. A frame map with 204-point markers was developed using an RI population consisting of 117 $F_{11}$ lines derived from a cross between cultivar 'Keburi' and a weedy soybean 'Masshokutou Kou 502'. The parents differed greatly in their abilities of somatic embryogenesis using immature cotyledons as explants. The ability of somatic embryogenesis was evaluated in five different experiments: the $F_{11}$ (evaluated in 1998) and $F_{15}$ (2002) generations cultured on basal media supplemented with $40\;mg\;l^{-1}$ 2,4-D (2,4-D1998 and 2,4-D2002), $F_{14}$ (2001) generation on medium with $40\;mg\;l^{-1}$ 2,4-D and high sucrose concentration [2,4-D2001 ($30\;g\;l^{-1}$ sucrose)], and the $F_{11}$ (1998) and $F_{12}$ (1999) generations on medium with $10\;mg\;l^{-1}$ NAA (NAA1998 and NAA1999). The RILs showed wide and continuous variations in each of the five experiments. In the composite interval mapping analysis, 2 QTLs were found in group 8 (D1b + W, LOD = 5.42, $r^2$ = 37.5) in the experiment of 2,4-D1998 and in group 6 (C2, LOD = 6.03, $r^2$ = 26.0) in the experiment of 2,4-D2001 (high concentration sucrose). In both QTLs, alleles of 'Masshokutou Kou 502' with high ability of somatic embryogenesis contributed to the QTLs. For the other three experiments, no QTL was detected in the criteria of LOD >3.0, suggesting the presence of minor genes.

Generation of Pseudovelocity Section of Block Ⅱ in the Yellow Sea by Seismogram Inversion (탄성파 자료 역산을 통한 황해 2광구 지역의 의속도 단면도의 작성)

  • Kwon Byung-Doo;Jeong Yu-Jeong;Yang Su-Yeong
    • The Korean Journal of Petroleum Geology
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    • v.1 no.1 s.1
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    • pp.29-35
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    • 1993
  • Seismic reflection data can be used to extract information about the velocity structure of the earth. This process is called a velocity inversion of the seismic data. However, it is difficult to recover a broad band reflection coefficient series because the frequency band of seismic trace is limited. The linear programming method has been examined to find the simplest velocity model that has frequency components consistent with the usable frequencies of the seismic trace and interval velocity data. The velocity structure of the earth is displayed in pseudovelocity section. After the linear program had been tested with a synthetic seismic trace, it was applied to the seismic reflection data of the Block Ⅱ in the Yellow Sea. By comparing the pseudovelocity section with sonic logs obtained from the well in the same area, it was possible to define the lithostratigraphy and the boundaries of Cretaceous volcanics and Cretaceous metavolcanics.

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Soil Erosion Assessment Using RS/GIS for Watershed Management in Dukchun River Basin, a Tributary of Namgang and Jinyang Lake

  • Cho Byung Jin;Yu Chan
    • Journal of The Korean Society of Agricultural Engineers
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    • v.46 no.7
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    • pp.3-12
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    • 2004
  • The need to predict the rate of soil erosion, both under existing conditions and those expected to occur following soil conservation practice, has been led to the development of various models. In this study Morgan model especially developed for field-sized areas on hill slopes was applied to assess the rate of soil erosion using RS/GIS environment in the Dukchun river basin, one of two tributaries flowing into Jinyang lake. In order to run the model, land cover mapping was made by the supervised classification method with Landsat TM satellite image data, the digital soil map was generated from scanning and screen digitizing from the hard copy of soil maps, digital elevation map (DEM) in order to generate the slope map was made by the digital map (DM) produced by National Geographic Information Institute (NGII). Almost all model parameters were generated to the multiple raster data layers, and the map calculation was made by the raster based GIS software, IL WIS which was developed by ITC, the Netherlands. Model results show that the annual soil loss rates are 5.2, 18.4, 30.3, 58.2 and 60.2 ton/ha/year in forest, paddy fields, built-up area, bare soil, and upland fields respectively. The estimated rates seemed to be high under the normal climatic conditions because of exaggerated land slopes due to DEM generation using 100 m contour interval. However, the results were worthwhile to estimate soil loss in hilly areas and the more precise result could be expected when the more accurate slope data is available.