• Title/Summary/Keyword: Generalized linear models (GLMs)

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Age Estimation with Panoramic Radiomorphometric Parameters Using Generalized Linear Models

  • Lee, Yeon-Hee;An, Jung-Sub
    • Journal of Oral Medicine and Pain
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    • v.46 no.2
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    • pp.21-32
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    • 2021
  • Purpose: The purpose of the present study was to investigate the correlation between age and 34 radiomorphometric parameters on panoramic radiographs, and to provide generalized linear models (GLMs) as a non-invasive, inexpensive, and accurate method to the forensic judgement of living individual's age. Methods: The study included 417 digital panoramic radiographs of Korean individuals (178 males and 239 females, mean age: 32.57±17.81 years). Considering the skeletal differences between the sexes, GLMs were obtained separately according to sex, as well as across the total sample. For statistical analysis and to predict the accuracy of the new GLMs, root mean squared error (RMSE) and adjusted R-squared (R2) were calculated. Results: The adjusted R2-values of the developed GLMs in the total sample, and male and female groups were 0.623, 0.637, and 0.660, respectively (p<0.001), while the allowable RMSE values were 8.80, 8.42, and 8.53 years, respectively. In the GLM of the total sample, the most influential predictor of greater age was decreased pulp area in the #36 first molar (beta=-26.52; p<0.01), followed by the presence of periodontitis (beta=10.24; p<0.01). In males, the most influential factor was the presence of periodontitis (beta=9.20; p<0.05), followed by the number of full veneer crowns (beta=2.19; p<0.001). In females, the most influential predictor was the presence of periodontitis (beta=18.10; p<0.001), followed by the tooth area of the #16 first molar (beta=-11.57; p<0.001). Conclusions: We established acceptable GLM for each sex and found out the predictors necessary to age estimation which can be easily found in panoramic radiographs. Our study provides reference that parameters such as the area of tooth and pulp, the number of teeth treated, and the presence of periodontitis should be considered in estimating age.

Cumulative Sums of Residuals in GLMM and Its Implementation

  • Choi, DoYeon;Jeong, KwangMo
    • Communications for Statistical Applications and Methods
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    • v.21 no.5
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    • pp.423-433
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    • 2014
  • Test statistics using cumulative sums of residuals have been widely used in various regression models including generalized linear models(GLM). Recently, Pan and Lin (2005) extended this testing procedure to the generalized linear mixed models(GLMM) having random effects, in which we encounter difficulties in computing the marginal likelihood that is expressed as an integral of random effects distribution. The Gaussian quadrature algorithm is commonly used to approximate the marginal likelihood. Many commercial statistical packages provide an option to apply this type of goodness-of-fit test in GLMs but available programs are very rare for GLMMs. We suggest a computational algorithm to implement the testing procedure in GLMMs by a freely accessible R package, and also illustrate through practical examples.

Development and Validation of Generalized Linear Regression Models to Predict Vessel Enhancement on Coronary CT Angiography

  • Masuda, Takanori;Nakaura, Takeshi;Funama, Yoshinori;Sato, Tomoyasu;Higaki, Toru;Kiguchi, Masao;Matsumoto, Yoriaki;Yamashita, Yukari;Imada, Naoyuki;Awai, Kazuo
    • Korean Journal of Radiology
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    • v.19 no.6
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    • pp.1021-1030
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    • 2018
  • Objective: We evaluated the effect of various patient characteristics and time-density curve (TDC)-factors on the test bolus-affected vessel enhancement on coronary computed tomography angiography (CCTA). We also assessed the value of generalized linear regression models (GLMs) for predicting enhancement on CCTA. Materials and Methods: We performed univariate and multivariate regression analysis to evaluate the effect of patient characteristics and to compare contrast enhancement per gram of iodine on test bolus (${\Delta}HUTEST$) and CCTA (${\Delta}HUCCTA$). We developed GLMs to predict ${\Delta}HUCCTA$. GLMs including independent variables were validated with 6-fold cross-validation using the correlation coefficient and Bland-Altman analysis. Results: In multivariate analysis, only total body weight (TBW) and ${\Delta}HUTEST$ maintained their independent predictive value (p < 0.001). In validation analysis, the highest correlation coefficient between ${\Delta}HUCCTA$ and the prediction values was seen in the GLM (r = 0.75), followed by TDC (r = 0.69) and TBW (r = 0.62). The lowest Bland-Altman limit of agreement was observed with GLM-3 (mean difference, $-0.0{\pm}5.1$ Hounsfield units/grams of iodine [HU/gI]; 95% confidence interval [CI], -10.1, 10.1), followed by ${\Delta}HUCCTA$ ($-0.0{\pm}5.9HU/gI$; 95% CI, -11.9, 11.9) and TBW ($1.1{\pm}6.2HU/gI$; 95% CI, -11.2, 13.4). Conclusion: We demonstrated that the patient's TBW and ${\Delta}HUTEST$ significantly affected contrast enhancement on CCTA images and that the combined use of clinical information and test bolus results is useful for predicting aortic enhancement.

Modeling Approaches for Dynamic Robust Design Experiment

  • Bae, Suk-Joo
    • Proceedings of the Korean Operations and Management Science Society Conference
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    • 2006.11a
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    • pp.373-376
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    • 2006
  • In general, there are three kinds of methods in analyzing dynamic robust design experiment: loss model approach, response function approach, and response model approach. In this talk, we review the three modeling approaches in terms of several criteria in comparison. This talk also generalizes the response model approach based on a generalized linear model. We develop a generalized two-step optimization procedure to substantially reduce the process variance by dampening the effect of both explicit and hidden noise variables. The proposed method provides more reliable results through iterative modeling of the residuals from the fitted response model. The method is compared with three existing approaches in practical examples.

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Effects of Hook and Bait Types on Bigeye Tuna Catch Rates in the Tuna Longline Fishery (다랑어 연승어업에서 눈다랑어 어획률에 미치는 낚시 및 미끼의 효과)

  • Kim, Soon-Song;Moon, Dae-Yeon;An, Doo-Hae;Hwang, Seon-Jae;Kim, Yeong-Seung;Bigelow, Keith;Curran, Daniel
    • Korean Journal of Ichthyology
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    • v.20 no.2
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    • pp.105-111
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    • 2008
  • A pelagic tuna longline research cruise in the eastern and central Pacific Ocean from September to October of 2006 was conducted to compare catch rates with the use of different hook type and bait combinations. Traditional tuna hooks (J 4) and three circle hook types (C15, C16, C18), along with five bait types (chub mackerel (CM), jack mackerel (JM), milkfish (MF), sardine (SD), and squid (SQ)) and hook number as a proxy for hook depth were evaluated for their effect on bigeye tuna catch rates (fish per 1,000 hooks) using Generalized Linear Models (GLMs). Results from 28 sets indicated significant differences in bigeye catch rates between individual longline sets and hook number. The GLM explained 33% of the deviance in bigeye catch rates with these two factors. An alternative model formulation included bait type which had a small effect (explaining 2.7% of the deviance) on catch rates. Hook type had a negligible and non-significant effect in the GLMs. These results indicate that all of the hooks and baits tested are equally effective at catching bigeye tuna and that hook number (depth) was the paramount operational factor in explaining bigeye tuna catch rates.

Determination factors for catch rate of the target species between circle hook and straight shank hook in the Korean tuna longline fishery (우리나라 다랑어연승어업에 있어서 환형낚시와 재래식낚시를 사용하여 목표종의 어획률을 결정하는 요인 분석)

  • An, Doo-Hae;Kwon, You-Jung;Bigelow, Keith;Moon, Dae-Yeon;Lee, Sung-Il
    • Journal of the Korean Society of Fisheries and Ocean Technology
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    • v.47 no.4
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    • pp.344-355
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    • 2011
  • We conducted experiments to compare the catch rate of bigeye tuna and yellowfin tuna between circle hooks and straight shank hook in the Korean tuna longline fishery at the eastern and central Pacific Ocean from 2005 to 2007. We analyzed difference of fork length, survival and hooking location between a circle hook and a straight shank hook for both tunas, respectively. There was no difference in the mean fork length size of yellowfin tuna caught on the two type of hook but bigeye tuna was significant. In case of survival, there was no difference between two hook type, but the difference of hooking location was significant for both species. We also analyzed to find determinants of both tunas catch rate using generalized linear models (GLMs) which were used latitude, longitude, year, month, depth, hook type, bait type and so on as independent variables. Spatial factors, latitude and longitude, and temporal factors, year and month, affected catch rate of bigeye tuna and yellowfin tuna. And also, depth such as a marine environment factor was influenced on catch rate.